Cumulative stressors impact macrofauna differentially according to sandy beach type: A meta-analysis.

Many studies have demonstrated human impacts on sandy beach macroinvertebrates. However, little is known about causative drivers among multiple co-occurring stressors and how these interact with natural habitat conditions to yield specific faunal responses. We performed a global meta-analysis to shed light on how interactions between human disturbances and beach morphodynamics shape macroinvertebrate populations. We found that supralittoral forms (Talitridae and Ocypodidae) responded more negatively to the Human Modification Metric (a proxy for urbanization) on dissipative beaches, whereas intertidal organisms (Hippidae and Cirolanidae) showed more negative responses on non-dissipative beaches. Based on these findings we propose the Cumulative Harshness Hypothesis (CHH), which predicts higher sensitivity of beach macroinvertebrates to human disturbances when inhabiting a harsher physical environment according to their life histories. Secondly, we compared the response of macroinvertebrates to urbanization levels from local to larger scales (from 500 to 50000 m). Supralittoral families responded more negatively to local urbanization, which leads to habitat loss due to removal or reduction of upper beach zones. Conversely, intertidal organisms with planktonic larval stages were more affected by urbanization at the largest spatial scales, which we hypothesize disrupts metapopulation dynamics by impacting the supply of larvae that could colonize human-disturbed beaches. The differential effects of human disturbances on macroinvertebrates according to beach morphodynamics suggest that the efficiency of these ecological indicators for beach monitoring is context-dependent. Focusing on multiple stressors rather than on a single one is also critical to mitigate human impacts on these threatened ecosystems.

Coupling beach ecology and macroplastics litter studies: Current trends and the way ahead.

As sites of floating marine material deposition, sandy beaches accumulate marine litter. While research and assessment on beach litter is increasing and involves various actors (scientists, society and NGOs), there is the need to assess current and future dominant trends, directions and priorities in that research. As such, a textural co-occurrence analysis was applied to published scientific literature. Words were considered both singly and as part of compound terms related to concepts relevant to sandy beach ecology: morphodynamic state; Littoral Active Zone; indicator fauna. Litter as a compound term was also included. The main co-occurrences were found within compounds, with scarce interaction of "morphodynamic state" with the others, indicating the need for further integration of beach ecology paradigms into beached plastics studies. Three approaches are proposed to overcome the research limits highlighted: the unequivocation of terms, the consideration of adequate scales, and the attention to dynamics rather than just patterns.

On single use plastic straws: Pre-ban findings on touristic beaches in Crete.

This baseline intends to report on littering related to single-use plastic straws, contextualized on two touristic beaches on the Northern shores of Crete (Greece). While beached straws were found to be mainly depending on local drivers, the study further highlighted an additional source of pollution related to plastic straws: the clear wrap in which single-use items can be offered to users. Over the summer months, a number of discarded straw wraps was in fact found, significantly related to both beach width and the presence of colorful straws. Wraps are different in shape, material, as well as likelihood of being dispersed and broken down in the environment, and easily escape estimates from non-targeted sampling. The ban on single use items seems then to be the most effective approach to avoid straws and, indirectly, straw wraps litter or spills.

The potential contribution of bloggers to change lifestyle and reduce plastic use and pollution: A small data approach.

Awareness raising and public engagement are key steps towards the reduction of demand, use and pollution related to plastic in everyday life. However, people not already active in this respect, nor seeking information about, may remain excluded from the main information flow. We therefore involved a professional blogger-posting on family lifestyle and travel with children- in the preparation of six thematic posts, each one dealing with a specific plastic-related topic. Given the size and the target of the initiative, results were considered in a small data approach: social-media parameters such as reaches and engagements overall aligned with blog followers' expected response in terms of engagement rates. However, high fluctuations were recorded, depending on the post topic. Such potential to reach blog readers and to highlight gaps at fine scale is encouraging the collaborations of professional bloggers with thematic campaigns, developed together with specialists of the topics considered.

Plastics in our ocean as transdisciplinary challenge.

This conference report summarizes the current challenges of researching microplastics pollution in the ocean as debated by international experts and stakeholders at a workshop held in San Sebastián, Spain, 1-2 October 2019. The transdisciplinary, co-learning approach of this report stressed the need to incorporate multiple perspective in solving the problem of microplastics and resulted in three proposed actions: (i) filtering microplastics from waste waters; (ii) mandatory ecolabels on plastic products packages; and (iii) circular economy of packaging plastics.

Environmental variability and heavy metal concentrations from five lagoons in the Ionian Sea (Amvrakikos Gulf, W Greece).

BACKGROUND: Coastal lagoons are ecosystems of major importance as they host a number of species tolerant to disturbances and they are highly productive. Therefore, these ecosystems should be protected to ensure stability and resilience. The lagoons of Amvrakikos Gulf form one of the most important lagoonal complexes in Greece. The optimal ecological status of these lagoons is crucial for the well-being of the biodiversity and the economic prosperity of the local communities. Thus, monitoring of the area is necessary to detect possible sources of disturbance and restore stability. NEW INFORMATION: The environmental variables and heavy metals concentrations, from five lagoons of Amvrakikos Gulf were measured from seasonal samplings and compared to the findings of previous studies in the area, in order to check for possible sources of disturbance. The analysis, showed that i) the values of the abiotic parameters vary with time (season), space (lagoon) and with space over time; ii) the variability of the environmental factors and enrichment in certain elements is naturally induced and no source of contamination is detected in the lagoons.

Rescuing biogeographic legacy data: The "Thor" Expedition, a historical oceanographic expedition to the Mediterranean Sea.

BACKGROUND: This article describes the digitization of a series of historical datasets based οn the reports of the 1908-1910 Danish Oceanographical Expeditions to the Mediterranean and adjacent seas. All station and sampling metadata as well as biodiversity data regarding calcareous rhodophytes, pelagic polychaetes, and fish (families Engraulidae and Clupeidae) obtained during these expeditions were digitized within the activities of the LifeWatchGreece Research Ιnfrastructure project and presented in the present paper. The aim was to safeguard public data availability by using an open access infrastructure, and to prevent potential loss of valuable historical data on the Mediterranean marine biodiversity. NEW INFORMATION: The datasets digitized here cover 2,043 samples taken at 567 stations during a time period from 1904 to 1930 in the Mediterranean and adjacent seas. The samples resulted in 1,588 occurrence records of pelagic polychaetes, fish (Clupeiformes) and calcareous algae (Rhodophyta). In addition, basic environmental data (e.g. sea surface temperature, salinity) as well as meterological conditions are included for most sampling events. In addition to the description of the digitized datasets, a detailed description of the problems encountered during the digitization of this historical dataset and a discussion on the value of such data are provided.

ENVIRONMENTS and EOL: identification of Environment Ontology terms in text and the annotation of the Encyclopedia of Life.

UNLABELLED: The association of organisms to their environments is a key issue in exploring biodiversity patterns. This knowledge has traditionally been scattered, but textual descriptions of taxa and their habitats are now being consolidated in centralized resources. However, structured annotations are needed to facilitate large-scale analyses. Therefore, we developed ENVIRONMENTS, a fast dictionary-based tagger capable of identifying Environment Ontology (ENVO) terms in text. We evaluate the accuracy of the tagger on a new manually curated corpus of 600 Encyclopedia of Life (EOL) species pages. We use the tagger to associate taxa with environments by tagging EOL text content monthly, and integrate the results into the EOL to disseminate them to a broad audience of users. AVAILABILITY AND IMPLEMENTATION: The software and the corpus are available under the open-source BSD and the CC-BY-NC-SA 3.0 licenses, respectively, at http://environments.hcmr.gr.

Polytraits: A database on biological traits of marine polychaetes.

The study of ecosystem functioning - the role which organisms play in an ecosystem - is becoming increasingly important in marine ecological research. The functional structure of a community can be represented by a set of functional traits assigned to behavioural, reproductive and morphological characteristics. The collection of these traits from the literature is however a laborious and time-consuming process, and gaps of knowledge and restricted availability of literature are a common problem. Trait data are not yet readily being shared by research communities, and even if they are, a lack of trait data repositories and standards for data formats leads to the publication of trait information in forms which cannot be processed by computers. This paper describes Polytraits (http://polytraits.lifewatchgreece.eu), a database on biological traits of marine polychaetes (bristle worms, Polychaeta: Annelida). At present, the database contains almost 20,000 records on morphological, behavioural and reproductive characteristics of more than 1,000 marine polychaete species, all referenced by literature sources. All data can be freely accessed through the project website in different ways and formats, both human-readable and machine-readable, and have been submitted to the Encyclopedia of Life for archival and integration with trait information from other sources.

The SPECIES and ORGANISMS Resources for Fast and Accurate Identification of Taxonomic Names in Text.

The exponential growth of the biomedical literature is making the need for efficient, accurate text-mining tools increasingly clear. The identification of named biological entities in text is a central and difficult task. We have developed an efficient algorithm and implementation of a dictionary-based approach to named entity recognition, which we here use to identify names of species and other taxa in text. The tool, SPECIES, is more than an order of magnitude faster and as accurate as existing tools. The precision and recall was assessed both on an existing gold-standard corpus and on a new corpus of 800 abstracts, which were manually annotated after the development of the tool. The corpus comprises abstracts from journals selected to represent many taxonomic groups, which gives insights into which types of organism names are hard to detect and which are easy. Finally, we have tagged organism names in the entire Medline database and developed a web resource, ORGANISMS, that makes the results accessible to the broad community of biologists. The SPECIES software is open source and can be downloaded from http://species.jensenlab.org along with dictionary files and the manually annotated gold-standard corpus. The ORGANISMS web resource can be found at http://organisms.jensenlab.org.

Prevalence and causes of abnormal liver function in patients with coeliac disease.

BACKGROUND & AIMS: Coeliac disease patients frequently display mild elevation of liver enzymes and this abnormality usually normalizes after gluten-free diet. To investigate the cause and prevalence of altered liver function tests in coeliac patients, basally and after 1 year of gluten-free diet. PATIENTS AND METHODS: Data from 245 untreated CD patients (196 women and 49 men, age range 15-80 years) were retrospectively analysed and the liver function tests before and after diet, as well as associated liver pathologies, were assessed. RESULTS: Overall, 43/245 (17.5%) patients had elevated values of one or both aminotransferases; the elevation was mild (<5 times the upper reference limit) in 41 (95%) and marked (>10 times the upper reference limit) in the remaining 2 (5%) patients. After 1 year of gluten-free diet, aminotransferase levels normalized in all but four patients with HCV infection or primary biliary cirrhosis. CONCLUSIONS: In coeliac patients, hypertransaminaseaemia at diagnosis and the lack of normalization of liver enzymes after 12 months of diet suggest coexisting liver disease. In such instance, further evaluation is recommended to exclude the liver disease. Early recognition and treatment of coeliac disease in patients affected by liver disease are important to improve the liver function and prevent complications.

Substrate dependent talitrid amphipods from fragmented beaches on the north coast of Crete (Crustacea, Amphipoda, Talitridae), including a redefinition of the genus Orchestia and descriptions of Orchestia xylino sp. nov. and Cryptorchestia gen. nov.

Four species of talitrid amphipods (Orchestia montagui Audouin, 1826, Orchestia stephenseni Cecchini, 1928, Orchestia xylino sp. nov. and Talitrus saltator (Montagu, 1808)) are reported from a set of fragmented pocket beaches to the east of Heraklion on the north coast of Crete. Aside from a previous record of O. stephenseni these are the first records of talitrid amphipods from the island of Crete. 2) Along a coastal segment of only 4.36 km, characterised by habitat fragmentation and substrate patchiness, a clear correlation between talitrid species and beach type is indicated. Talitrus saltator occurs only on sandy beaches. Orchestia montagui and O. xylino occur on banquette beaches and O. montagui, O. stephenseni and O. xylino occur on mixed sand/gravel and cobble beaches. 3) The genus Orchestia is redefined and confined to 15 marine supralittoral species from eastern North America, islands in the North-eastern Atlantic, and western-Europe, including the Baltic and the Mediterranean Seas plus a perplexing group in New Zealand. 4) The new genus Cryptorchestia is described, based on nine terrestrial species previously included in the genus Orchestia and occurring in western Europe, the Mediterranean Sea and the Azores and Canary islands in the North-eastern Atlantic. 5) The new species Orchestia xylino sp. nov. is described. 6) An extensive bibliography for the species in this study is provided.

Increase of colonic mast cells in obstructed defecation and their relationship with enteric glia.

BACKGROUND: Mast cells are involved in visceral hypersensitivity and motor activity of the gastrointestinal tract. However, there is almost no information concerning mast cells in constipated patients. AIMS: The purpose of this study was to investigate mast cells distribution in all colonic layers in controls and severely constipated patients with obstructed defecation. METHODS: Full-thickness specimens from colons of patients undergoing surgery for obstructed defecation due to refractoriness to other therapeutic interventions (n = 11), compared to controls, were obtained and the number of mast cells (evaluated by specific monoclonal antibodies) were counted in the whole viscus and in the various colonic segments (cecum, ascending, transverse, descending, and sigmoid). RESULTS: Compared to controls, constipated patients had significantly higher numbers of mast cells, both as an overall number and in single colonic segments. This increase was especially evident in the mucosa and submucosa. Mast cells were homogeneously represented in the various segment of the large bowel, in both controls and patients. Degranulated mast cells were found to be close to enteric glial cells and glial filaments. CONCLUSIONS: Colonic mast cells are increased in obstructed defecation patients. This might represent a vicariating mechanism to the impaired colonic propulsive activity of these patients.

Engaging the broader community in biodiversity research: the concept of the COMBER pilot project for divers in ViBRANT.

This paper discusses the design and implementation of a citizen science pilot project, COMBER (Citizens' Network for the Observation of Marine BiodivERsity, http://www.comber.hcmr.gr), which has been initiated under the ViBRANT EU e-infrastructure. It is designed and implemented for divers and snorkelers who are interested in participating in marine biodiversity citizen science projects. It shows the necessity of engaging the broader community in the marine biodiversity monitoring and research projects, networks and initiatives. It analyses the stakeholders, the industry and the relevant markets involved in diving activities and their potential to sustain these activities. The principles, including data policy and rewards for the participating divers through their own data, upon which this project is based are thoroughly discussed. The results of the users analysis and lessons learned so far are presented. Future plans include promotion, links with citizen science web developments, data publishing tools, and development of new scientific hypotheses to be tested by the data collected so far.

Storytelling and environmental information: connecting schoolchildren and herpetofauna in Morocco.

Northwestern Morocco is undergoing a sudden change in the level of infrastructure growth and pressure on the environment from increased tourism. The ongoing changes are raising questions about how the ecosystem will react, and the relevant drivers of these changes. The Oued Laou valley in north-west Morocco hosts high landscape, species and human cultural diversity. The Talassemtane National Park has been established to preserve the environment in this region; however, what information tools are available to children regarding this environment? The ecosystem is illustrated here using three components: herpetofauna (representing ecosystem components), problems related to water quantity and quality (representing interactions within ecosystem components) and Talassemtane National Park (representing a case of ecosystem management). A children's book was written on this topic, and when the book was delivered to pupils, a questionnaire was included, aimed at determining their sources of environmental information. The results identified major changes in the sources of information utilized by children in this part of Morocco, a clear role of schools in explaining ecosystem components, and an increasing role of TV in environmental information supply. The role of the family was found to be less important than TV or school. Another major source of pupils' environmental knowledge is personal observation and hands-on experience, both for rural and urban children. Children are willing to discover and understand complex systems, and researchers should be encouraged to supply children with correct and up-to-date information on environmental systems, focusing at first on the local environment, as a background for sustainable development.