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1.
ChemMedChem ; 18(15): e202300211, 2023 08 01.
Artigo em Inglês | MEDLINE | ID: mdl-37264975

RESUMO

Twelve N2'-branched acyclic nucleoside phosphonates and bisphosphonates were synthesized as potential inhibitors of Plasmodium falciparum hypoxanthine-guanine-xanthine phosphoribosyltransferase (PfHGXPRT), the key enzyme in the purine salvage pathway for production of purine nucleotides. The chemical structures were designed with the aim to study selectivity of the inhibitors for PfHGXPRT over human HGPRT. The newly prepared compounds contain 9-deazahypoxanthine connected to a phosphonate group via a five-atom-linker bearing a nitrogen atom (N2') as a branching point. All compounds, with the additional phosphonate group(s) in the second aliphatic linker attached to N2' atom, were low micromolar inhibitors of PfHGXPRT with low to modest selectivity for the parasite enzyme over human HGPRT. The effect of the addition of different chemical groups/linkers to N2' atom on the inhibition constants and selectivity is discussed.


Assuntos
Antimaláricos , Organofosfonatos , Humanos , Hipoxantina Fosforribosiltransferase/metabolismo , Hipoxantina Fosforribosiltransferase/farmacologia , Nucleosídeos/farmacologia , Nucleosídeos/química , Plasmodium falciparum , Organofosfonatos/farmacologia , Organofosfonatos/química , Antimaláricos/farmacologia , Antimaláricos/química , Pentosiltransferases , Hipoxantinas/farmacologia , Inibidores Enzimáticos/farmacologia , Inibidores Enzimáticos/química
2.
Eur J Med Chem ; 239: 114559, 2022 Sep 05.
Artigo em Inglês | MEDLINE | ID: mdl-35763869

RESUMO

A series of novel 7-aryl-7-deazaadenine-based N-branched acyclic nucleoside phosphonates (aza-ANPs) has been prepared using the optimized Suzuki cross-coupling reaction as the key synthetic step. The final free phosphonates 15a-h were inactive, due to their inefficient transport across cell membranes, but they inhibited Trypanosoma brucei adenine phosphoribosyltransferase (TbrAPRT1) with Ki values of 1.7-14.1 µM. The corresponding phosphonodiamidate prodrugs 14a-h exhibited anti-trypanosomal activity in the Trypanosoma brucei brucei cell-based assay with EC50 values in the range of 0.58-6.8 µM. 7-(4-Methoxy)phenyl-7-deazapurine derivative 14h, containing two phosphonate moieties, was the most potent anti-trypanosomal agent from the series, with EC50 = 0.58 µM and SI = 16. Finally, phosphonodiamidate prodrugs 14a-h exerted low micromolar cytotoxicity against leukemia and/or cancer cell lines tested.


Assuntos
Organofosfonatos , Pró-Fármacos , Trypanosoma brucei brucei , Nucleosídeos/farmacologia , Organofosfonatos/farmacologia , Pró-Fármacos/farmacologia , Purinas
3.
J Med Chem ; 65(5): 4030-4057, 2022 03 10.
Artigo em Inglês | MEDLINE | ID: mdl-35175749

RESUMO

Pathogens such as Plasmodium and Trypanosoma spp. are unable to synthesize purine nucleobases. They rely on the salvage of these purines and their nucleosides from the host cell to synthesize the purine nucleotides required for DNA/RNA production. The key enzymes in this pathway are purine phosphoribosyltransferases (PRTs). Here, we synthesized 16 novel acyclic nucleoside phosphonates, 12 with a chiral center at C-2', and eight bearing a second chiral center at C-6'. Of these, bisphosphonate (S,S)-48 is the most potent inhibitor of the Plasmodium falciparum and P. vivax 6-oxopurine PRTs and the most potent inhibitor of two Trypanosoma brucei (Tbr) 6-oxopurine PRTs yet discovered, with Ki values as low as 2 nM. Crystal structures of (S,S)-48 in complex with human and Tbr 6-oxopurine PRTs show that the inhibitor binds to the enzymes in different conformations, providing an explanation for its potency and selectivity (i.e., 35-fold in favor of the parasite enzymes).


Assuntos
Antimaláricos , Organofosfonatos , Parasitos , Pentosiltransferases/metabolismo , Animais , Antimaláricos/farmacologia , Inibidores Enzimáticos/química , Inibidores Enzimáticos/farmacologia , Humanos , Nucleosídeos/química , Nucleosídeos/farmacologia , Organofosfonatos/química , Organofosfonatos/farmacologia , Plasmodium falciparum , Purinonas
4.
Eur J Med Chem ; 225: 113798, 2021 Dec 05.
Artigo em Inglês | MEDLINE | ID: mdl-34482272

RESUMO

Some pathogens, including parasites of the genus Trypanosoma causing Human and Animal African Trypanosomiases, cannot synthesize purines de novo and they entirely rely on the purine salvage pathway (PSP) for their nucleotide generation. Thus, their PSP enzymes are considered as promising drug targets, sparsely explored so far. Recently, a significant role of acyclic nucleoside phosphonates (ANPs) as inhibitors of key enzymes of PSP, namely of 6-oxopurine phosphoribosyltransferases (PRTs), has been discovered. Herein, we designed and synthesized two series of new ANPs branched at the C1' position as mimics of adenosine monophosphate. The novel ANPs efficaciously inhibited Trypanosoma brucei adenine PRT (TbrAPRT1) activity in vitro and it was shown that the configuration on the C1' chiral centre strongly influenced their activity: the (R)-enantiomers proved to be more potent compared to the (S)-enantiomers. Two ANPs, with Ki values of 0.39 µM and 0.57 µM, represent the most potent TbrAPRT1 inhibitors reported to date and they are an important tool to further study purine metabolism in various parasites.


Assuntos
Adenina Fosforribosiltransferase/antagonistas & inibidores , Monofosfato de Adenosina/farmacologia , Antiprotozoários/farmacologia , Inibidores Enzimáticos/farmacologia , Nucleosídeos/farmacologia , Trypanosoma brucei brucei/efeitos dos fármacos , Adenina Fosforribosiltransferase/metabolismo , Monofosfato de Adenosina/síntese química , Monofosfato de Adenosina/química , Antiprotozoários/síntese química , Antiprotozoários/química , Relação Dose-Resposta a Droga , Inibidores Enzimáticos/síntese química , Inibidores Enzimáticos/química , Estrutura Molecular , Nucleosídeos/síntese química , Nucleosídeos/química , Testes de Sensibilidade Parasitária , Relação Estrutura-Atividade , Trypanosoma brucei brucei/enzimologia
5.
Sci Rep ; 11(1): 13317, 2021 06 25.
Artigo em Inglês | MEDLINE | ID: mdl-34172767

RESUMO

All medically important unicellular protozoans cannot synthesize purines de novo and they entirely rely on the purine salvage pathway (PSP) for their nucleotide generation. Therefore, purine derivatives have been considered as a promising source of anti-parasitic compounds since they can act as inhibitors of the PSP enzymes or as toxic products upon their activation inside of the cell. Here, we characterized a Trypanosoma brucei enzyme involved in the salvage of adenine, the adenine phosphoribosyl transferase (APRT). We showed that its two isoforms (APRT1 and APRT2) localize partly in the cytosol and partly in the glycosomes of the bloodstream form (BSF) of the parasite. RNAi silencing of both APRT enzymes showed no major effect on the growth of BSF parasites unless grown in artificial medium with adenine as sole purine source. To add into the portfolio of inhibitors for various PSP enzymes, we designed three types of acyclic nucleotide analogs as potential APRT inhibitors. Out of fifteen inhibitors, four compounds inhibited the activity of the recombinant APRT1 with Ki in single µM values. The ANP phosphoramidate membrane-permeable prodrugs showed pronounced anti-trypanosomal activity in a cell-based assay, despite the fact that APRT enzymes are dispensable for T. brucei growth in vitro. While this suggests that the tested ANP prodrugs exert their toxicity by other means in T. brucei, the newly designed inhibitors can be further improved and explored to identify their actual target(s).


Assuntos
Nucleotídeos de Adenina/metabolismo , Adenina Fosforribosiltransferase/metabolismo , Nucleosídeos/metabolismo , Organofosfonatos/metabolismo , Trypanosoma brucei brucei/metabolismo , Linhagem Celular , Linhagem Celular Tumoral , Células HeLa , Humanos , Purinas/metabolismo
6.
Eur J Med Chem ; 219: 113416, 2021 Jul 05.
Artigo em Inglês | MEDLINE | ID: mdl-33887682

RESUMO

Parasites of the Plasmodium genus are unable to produce purine nucleotides de novo and depend completely on the salvage pathway. This fact makes plasmodial hypoxanthine-guanine-(xanthine) phosphoribosyltransferase [HG(X)PRT] a valuable target for development of antimalarial agents. A series of nucleotide analogues was designed, synthesized and evaluated as potential inhibitors of Plasmodium falciparum HGXPRT, P. vivax HGPRT and human HGPRT. These novel nucleoside phosphonates have a pyrrolidine, piperidine or piperazine ring incorporated into the linker connecting the purine base to a phosphonate group(s) and exhibited a broad range of Ki values between 0.15 and 72 µM. The corresponding phosphoramidate prodrugs, able to cross cell membranes, have been synthesized and evaluated in a P. falciparum infected human erythrocyte assay. Of the eight prodrugs evaluated seven exhibited in vitro antimalarial activity with IC50 values within the range of 2.5-12.1 µM. The bis-phosphoramidate prodrug 13a with a mean (SD) IC50 of 2.5 ± 0.7 µM against the chloroquine-resistant P. falciparum W2 strain exhibited low cytotoxicity in the human hepatocellular liver carcinoma (HepG2) and normal human dermal fibroblasts (NHDF) cell lines at a concentration of 100 µM suggesting good selectivity for further structure-activity relationship investigations.


Assuntos
Antimaláricos/síntese química , Inibidores Enzimáticos/química , Nucleotídeos/química , Pentosiltransferases/antagonistas & inibidores , Proteínas de Protozoários/antagonistas & inibidores , Antimaláricos/metabolismo , Antimaláricos/farmacologia , Linhagem Celular , Sobrevivência Celular/efeitos dos fármacos , Avaliação Pré-Clínica de Medicamentos , Resistência a Medicamentos/efeitos dos fármacos , Inibidores Enzimáticos/metabolismo , Eritrócitos/citologia , Eritrócitos/metabolismo , Eritrócitos/parasitologia , Humanos , Nucleotídeos/metabolismo , Pentosiltransferases/metabolismo , Piperazina/química , Piperidinas/química , Plasmodium falciparum/efeitos dos fármacos , Plasmodium falciparum/enzimologia , Plasmodium vivax/enzimologia , Pró-Fármacos/síntese química , Pró-Fármacos/química , Pró-Fármacos/metabolismo , Pró-Fármacos/farmacologia , Proteínas de Protozoários/metabolismo , Pirrolidinas/química , Relação Estrutura-Atividade
7.
J Med Chem ; 64(9): 5710-5729, 2021 05 13.
Artigo em Inglês | MEDLINE | ID: mdl-33891818

RESUMO

Helicobacter pylori (Hp) is a human pathogen that lives in the gastric mucosa of approximately 50% of the world's population causing gastritis, peptic ulcers, and gastric cancer. An increase in resistance to current drugs has sparked the search for new Hp drug targets and therapeutics. One target is the disruption of nucleic acid production, which can be achieved by impeding the synthesis of 6-oxopurine nucleoside monophosphates, the precursors of DNA and RNA. These metabolites are synthesized by Hp xanthine-guanine-hypoxanthine phosphoribosyltransferase (XGHPRT). Here, nucleoside phosphonates have been evaluated, which inhibit the activity of this enzyme with Ki values as low as 200 nM. The prodrugs of these compounds arrest the growth of Hp at a concentration of 50 µM in cell-based assays. The kinetic properties of HpXGHPRT have been determined together with its X-ray crystal structure in the absence and presence of 9-[(N-3-phosphonopropyl)-aminomethyl-9-deazahypoxanthine, providing a basis for new antibiotic development.


Assuntos
Antibacterianos/química , Proteínas de Bactérias/metabolismo , Pentosiltransferases/metabolismo , Sequência de Aminoácidos , Antibacterianos/metabolismo , Antibacterianos/farmacologia , Antibacterianos/uso terapêutico , Proteínas de Bactérias/química , Sítios de Ligação , Cristalografia por Raios X , Gastroenteropatias/tratamento farmacológico , Gastroenteropatias/microbiologia , Gastroenteropatias/patologia , Infecções por Helicobacter/tratamento farmacológico , Infecções por Helicobacter/patologia , Helicobacter pylori/efeitos dos fármacos , Helicobacter pylori/enzimologia , Humanos , Hipoxantina Fosforribosiltransferase/química , Hipoxantina Fosforribosiltransferase/metabolismo , Hipoxantinas/química , Hipoxantinas/metabolismo , Hipoxantinas/farmacologia , Hipoxantinas/uso terapêutico , Cinética , Simulação de Dinâmica Molecular , Organofosfonatos/química , Organofosfonatos/metabolismo , Organofosfonatos/farmacologia , Organofosfonatos/uso terapêutico , Pentosiltransferases/química , Pró-Fármacos/química , Pró-Fármacos/metabolismo , Pró-Fármacos/farmacologia , Pró-Fármacos/uso terapêutico , Alinhamento de Sequência , Relação Estrutura-Atividade
8.
J Bacteriol ; 202(5)2020 02 11.
Artigo em Inglês | MEDLINE | ID: mdl-31818925

RESUMO

Purine metabolism plays a ubiquitous role in the physiology of Mycobacterium tuberculosis and other mycobacteria. The purine salvage enzyme hypoxanthine-guanine phosphoribosyltransferase (HGPRT) is essential for M. tuberculosis growth in vitro; however, its precise role in M. tuberculosis physiology is unclear. Membrane-permeable prodrugs of specifically designed HGPRT inhibitors arrest the growth of M. tuberculosis and represent potential new antituberculosis compounds. Here, we investigated the purine salvage pathway in the model organism Mycobacterium smegmatis Using genomic deletion analysis, we confirmed that HGPRT is the only guanine and hypoxanthine salvage enzyme in M. smegmatis but is not required for in vitro growth of this mycobacterium or survival under long-term stationary-phase conditions. We also found that prodrugs of M. tuberculosis HGPRT inhibitors displayed an unexpected antimicrobial activity against M. smegmatis that is independent of HGPRT. Our data point to a different mode of mechanism of action for these inhibitors than was originally proposed.IMPORTANCE Purine bases, released by the hydrolytic and phosphorolytic degradation of nucleic acids and nucleotides, can be salvaged and recycled. The hypoxanthine-guanine phosphoribosyltransferase (HGPRT), which catalyzes the formation of guanosine-5'-monophosphate from guanine and inosine-5'-monophosphate from hypoxanthine, represents a potential target for specific inhibitor development. Deletion of the HGPRT gene (Δhgprt) in the model organism Mycobacterium smegmatis confirmed that this enzyme is not essential for M. smegmatis growth. Prodrugs of acyclic nucleoside phosphonates (ANPs), originally designed against HGPRT from Mycobacterium tuberculosis, displayed anti-M. smegmatis activities comparable to those obtained for M. tuberculosis but also inhibited the ΔhgprtM. smegmatis strain. These results confirmed that ANPs act in M. smegmatis by a mechanism independent of HGPRT.


Assuntos
Hipoxantina Fosforribosiltransferase/genética , Mycobacterium smegmatis/genética , Antituberculosos/química , Antituberculosos/farmacologia , Catálise , Relação Dose-Resposta a Droga , Inibidores Enzimáticos/química , Inibidores Enzimáticos/farmacologia , Hipoxantina Fosforribosiltransferase/antagonistas & inibidores , Hipoxantina Fosforribosiltransferase/química , Hipoxantina Fosforribosiltransferase/metabolismo , Redes e Vias Metabólicas , Viabilidade Microbiana , Mycobacterium smegmatis/crescimento & desenvolvimento , Mycobacterium smegmatis/metabolismo , Plasmídeos/genética , Purinas/metabolismo
9.
Eur J Med Chem ; 183: 111667, 2019 Dec 01.
Artigo em Inglês | MEDLINE | ID: mdl-31536893

RESUMO

Hypoxanthine-guanine-xanthine phosphoribosyltransferase (HGXPRT) is a recognized target for antimalarial chemotherapeutics. It synthesises all of the 6-oxopurine nucleoside monophosphates, IMP, GMP and XMP needed by the malarial parasite, Plasmodium falciparum (Pf). PfHGXPRT is also indirectly responsible for the synthesis of the adenosine monophosphate, AMP. The acyclic nucleoside phosphonates (ANPs) are a class of PfHGXPRT inhibitors. Prodrugs of these compounds are able to arrest the growth of Pf in cell culture. In the search for new inhibitors of PfHGXPRT, a series of sulfur containing ANPs (thia-ANPs) has been designed and synthesized. These compounds are based on the structure of 2-(phosphonoethoxy)ethylguanine (PEEG) and PEEHx which consist of a purine base (i.e. guanine or hypoxanthine) linked to a phosphonate group by five atoms i.e. four carbons and one oxygen. Here, PEEG and PEEHx were modified by substituting a sulfide, sulfoxide or a sulfone bridge for the oxygen atom in the linker. The effect of these substitutions on the Ki values for human HGPRT and PfHGXPRT was investigated and showed that most of the thia-ANPs distinctively favour PfHGXPRT. For example, the thia-analogue of PEEHx has a Ki value of 0.2 µM for PfHGXPRT, a value 25-fold lower than for the human counterpart. Prodrugs of these compounds have IC50 values in the 4-6 µM range in antimalarial cell-based assays, making them attractive compounds for further development as antimalarial drug leads.


Assuntos
Antimaláricos/síntese química , Nucleosídeos/síntese química , Organofosfonatos/síntese química , Pentosiltransferases/antagonistas & inibidores , Plasmodium falciparum/enzimologia , Sulfetos/química , Sulfonas/química , Sulfóxidos/química , Antimaláricos/farmacologia , Humanos , Estrutura Molecular , Nucleosídeos/farmacologia , Organofosfonatos/farmacologia , Oxirredução , Plasmodium falciparum/efeitos dos fármacos , Pró-Fármacos/síntese química , Pró-Fármacos/farmacologia , Relação Estrutura-Atividade , Termodinâmica
10.
FEBS J ; 286(23): 4721-4736, 2019 12.
Artigo em Inglês | MEDLINE | ID: mdl-31287615

RESUMO

The 6-oxopurine phosphoribosyltransferases (PRTs) are drug targets for the treatment of parasitic diseases. This is due to the fact that parasites are auxotrophic for the 6-oxopurine bases relying on salvage enzymes for the synthesis of their 6-oxopurine nucleoside monophosphates. In Trypanosoma brucei, the parasite that is the aetiological agent for sleeping sickness, there are three 6-oxopurine PRT isoforms. Two are specific for hypoxanthine and guanine, whilst the third, characterized here, uses all three naturally occurring bases with similar efficiency. Here, we have determined crystal structures for TbrHGXPRT in complex with GMP, XMP and IMP to investigate the structural basis for substrate specificity. The results show that Y201 and E208, not commonly observed within the purine binding pocket of 6-oxopurine PRTs, contribute to the versatility of this enzyme. The structures further show that a nearby water can act as an adaptor to facilitate the binding of XMP and GMP. When GMP binds, a water can accept a proton from the 2-amino group but when XMP binds, the equivalent water can donate its proton to the 2-oxo group. However, when IMP is bound, no water molecule is observed at that location. DATABASE: Coordinates and structure factors were submitted to the Protein Data Bank and have accession codes of 6MXB, 6MXC, 6MXD and 6MXG for the TbrHGXPRT.XMP complex, TbrHGXPRT.GMP complex, TbrHGXPRT.IMP complex, and TbrHGPRT.XMP complex, respectively.


Assuntos
Guanosina Monofosfato/metabolismo , Inosina Monofosfato/química , Inosina Monofosfato/metabolismo , Pentosiltransferases/química , Pentosiltransferases/metabolismo , Ribonucleotídeos/química , Ribonucleotídeos/metabolismo , Trypanosoma brucei brucei/enzimologia , Sequência de Aminoácidos , Guanosina Monofosfato/química , Conformação Proteica , Especificidade por Substrato , Xantina
11.
PLoS Negl Trop Dis ; 12(2): e0006301, 2018 02.
Artigo em Inglês | MEDLINE | ID: mdl-29481567

RESUMO

Due to toxicity and compliance issues and the emergence of resistance to current medications new drugs for the treatment of Human African Trypanosomiasis are needed. A potential approach to developing novel anti-trypanosomal drugs is by inhibition of the 6-oxopurine salvage pathways which synthesise the nucleoside monophosphates required for DNA/RNA production. This is in view of the fact that trypanosomes lack the machinery for de novo synthesis of the purine ring. To provide validation for this approach as a drug target, we have RNAi silenced the three 6-oxopurine phosphoribosyltransferase (PRTase) isoforms in the infectious stage of Trypanosoma brucei demonstrating that the combined activity of these enzymes is critical for the parasites' viability. Furthermore, we have determined crystal structures of two of these isoforms in complex with several acyclic nucleoside phosphonates (ANPs), a class of compound previously shown to inhibit 6-oxopurine PRTases from several species including Plasmodium falciparum. The most potent of these compounds have Ki values as low as 60 nM, and IC50 values in cell based assays as low as 4 µM. This data provides a solid platform for further investigations into the use of this pathway as a target for anti-trypanosomal drug discovery.


Assuntos
Inibidores Enzimáticos/farmacologia , Redes e Vias Metabólicas/efeitos dos fármacos , Purinonas/metabolismo , Tripanossomicidas/farmacologia , Trypanosoma brucei brucei/metabolismo , Domínio Catalítico , Descoberta de Drogas , Inibidores Enzimáticos/química , Humanos , Hipoxantina Fosforribosiltransferase/antagonistas & inibidores , Hipoxantina Fosforribosiltransferase/química , Hipoxantina Fosforribosiltransferase/genética , Hipoxantina Fosforribosiltransferase/metabolismo , Modelos Moleculares , Pentosiltransferases/antagonistas & inibidores , Pentosiltransferases/química , Pentosiltransferases/genética , Pentosiltransferases/metabolismo , Interferência de RNA , Tripanossomicidas/química , Trypanosoma brucei brucei/efeitos dos fármacos , Trypanosoma brucei brucei/enzimologia , Trypanosoma brucei brucei/genética
12.
ACS Chem Biol ; 13(1): 82-90, 2018 01 19.
Artigo em Inglês | MEDLINE | ID: mdl-29161011

RESUMO

Plasmodium falciparum (Pf) and Plasmodium vivax (Pv) are the foremost causative agents of malaria. Due to the development of resistance to current antimalarial medications, new drugs for this parasitic disease need to be discovered. The activity of hypoxanthine-guanine-[xanthine]-phosphoribosyltransferase, HG[X]PRT, is reported to be essential for the growth of both of these parasites, making it an excellent target for antimalarial drug discovery. Here, we have used rational structure-based methods to design an inhibitor, [3R,4R]-4-guanin-9-yl-3-((S)-2-hydroxy-2-phosphonoethyl)oxy-1-N-(phosphonopropionyl)pyrrolidine, of PvHGPRT and PfHGXPRT that has Ki values of 8 and 7 nM, respectively, for these two enzymes. The crystal structure of PvHGPRT in complex with this compound has been determined to 2.85 Å resolution. The corresponding complex with human HGPRT was also obtained to allow a direct comparison of the binding modes of this compound with the two enzymes. The tetra-(ethyl l-phenylalanine) tetraamide prodrug of this compound was synthesized, and it has an IC50 of 11.7 ± 3.2 µM against Pf lines grown in culture and a CC50 in human A549 cell lines of 102 ± 11 µM, thus giving it a ∼10-fold selectivity index.


Assuntos
Antimaláricos/química , Antimaláricos/farmacologia , Hipoxantina Fosforribosiltransferase/antagonistas & inibidores , Plasmodium vivax/enzimologia , Domínio Catalítico , Técnicas de Química Sintética , Cristalografia por Raios X , Difosfonatos/química , Difosfonatos/farmacologia , Desenho de Fármacos , Proteínas de Escherichia coli/química , Humanos , Hipoxantina Fosforribosiltransferase/química , Hipoxantina Fosforribosiltransferase/metabolismo , Modelos Moleculares , Pentosiltransferases/antagonistas & inibidores , Pentosiltransferases/química , Pentosiltransferases/metabolismo , Conformação Proteica
13.
J Med Chem ; 60(17): 7539-7554, 2017 09 14.
Artigo em Inglês | MEDLINE | ID: mdl-28813147

RESUMO

Acyclic nucleoside bisphosphonates (ANbPs) have previously been shown to be good inhibitors of human hypoxanthine-guanine phosphoribosyltransferase (HGPRT) and Plasmodium falciparum (Pf) hypoxanthine-guanine-xanthine phosphoribosyltransferase (PfHGXPRT). On the basis of this scaffold, a new series of ANbPs was synthesized. One of these new ANbPs, [3-(guanine-9-yl)-2-((2-phosphonoethoxy)methyl)propoxy]methylphosphonic acid, exhibited Ki values of 6 and 70 nM for human HGPRT and Pf HGXPRT, respectively. These low Ki values were achieved by inserting an extra carbon atom in the linker connecting the N9 atom of guanine to one of the phosphonate groups. The crystal structure of this ANbP in complex with human HGPRT was determined at 2.0 Å resolution and shows that it fills three key pockets in the active site. The most potent phosphoramidate prodrugs of these compounds have IC50 values in the low micromolar range in Pf lines and low toxicity in human A549 cells, demonstrating that these ANbPs are excellent antimalarial drug leads.


Assuntos
Antimaláricos/química , Antimaláricos/farmacologia , Difosfonatos/química , Difosfonatos/farmacologia , Pentosiltransferases/antagonistas & inibidores , Plasmodium falciparum/efeitos dos fármacos , Plasmodium falciparum/enzimologia , Humanos , Malária Falciparum/tratamento farmacológico , Malária Falciparum/enzimologia , Simulação de Acoplamento Molecular , Nucleosídeos/química , Nucleosídeos/farmacologia , Pentosiltransferases/metabolismo , Plasmodium falciparum/metabolismo
14.
Bioorg Med Chem ; 25(15): 4008-4030, 2017 08 01.
Artigo em Inglês | MEDLINE | ID: mdl-28601510

RESUMO

Two new series of symmetric acyclic nucleoside bisphosphonates (ANbPs) have been synthesised as potential inhibitors of the Plasmodium falciparum (Pf) and vivax (Pv) 6-oxopurine phosphoribosyltransferases. The structural variability between these symmetric ANbPs lies in the number of atoms in the two acyclic linkers connecting the N9 atom of the purine base to each of two phosphonate groups and the branching point of the acyclic moiety relative to the purine base, which occurs at either the alpha or beta positions. Within each series, six different 6-oxopurine bases have been attached. In general, the ANbPs with either guanine or hypoxanthine have lower Ki values than for those containing either the 8-bromo or 7-deaza 6-oxopurine bases. The lowest Ki values obtained for the two parasite enzymes were 0.1µM (Pf) and 0.2µM (Pv) for this series of compounds. Two phosphoramidate prodrugs of these inhibitors exhibited antimalarial activity against Pf in infected erythrocyte cell culture with IC50 values of 0.8 and 1.5µM. These two compounds exhibited low cytotoxicity in human A549 cells having CC50 values of >300µM resulting in an excellent selectivity index.


Assuntos
ATP Fosforribosiltransferase/antagonistas & inibidores , Antimaláricos/síntese química , Antimaláricos/farmacologia , Inibidores Enzimáticos/síntese química , Inibidores Enzimáticos/farmacologia , Plasmodium falciparum/efeitos dos fármacos , Plasmodium vivax/efeitos dos fármacos , Pró-Fármacos/farmacologia , Animais , Linhagem Celular Tumoral , Humanos
15.
ChemMedChem ; 12(14): 1133-1141, 2017 07 20.
Artigo em Inglês | MEDLINE | ID: mdl-28628279

RESUMO

Acyclic nucleoside phosphonates (ANPs) are an important class of therapeutic drugs that act as antiviral agents by inhibiting viral DNA polymerases and reverse transcriptases. ANPs containing a 6-oxopurine unit instead of a 6-aminopurine or pyrimidine base are inhibitors of the purine salvage enzyme, hypoxanthine-guanine-[xanthine] phosphoribosyltransferase (HG[X]PRT). Such compounds, and their prodrugs, are able to arrest the growth of Plasmodium falciparum (Pf) in cell culture. A new series of ANPs were synthesized and tested as inhibitors of human HGPRT, PfHGXPRT, and Plasmodium vivax (Pv) HGPRT. The novelty of these compounds is that they contain a five-membered heterocycle (imidazoline, imidazole, or triazole) inserted between the acyclic linker(s) and the nucleobase, namely, 9-deazahypoxanthine. Five of the compounds were found to be micromolar inhibitors of PfHGXPRT and PvHGPRT, but no inhibition of human HGPRT was observed under the same assay conditions. This demonstrates selectivity of these types of compounds for the two parasitic enzymes compared to the human counterpart and confirms the importance of the chemical nature of the acyclic moiety in conferring affinity/selectivity for these three enzymes.


Assuntos
Antimaláricos/síntese química , Hipoxantinas/química , Nucleosídeos/síntese química , Organofosfonatos/síntese química , Pentosiltransferases/antagonistas & inibidores , Plasmodium falciparum/enzimologia , Plasmodium vivax/enzimologia , Antimaláricos/química , Humanos , Hipoxantina Fosforribosiltransferase/antagonistas & inibidores , Modelos Moleculares , Nucleosídeos/química , Organofosfonatos/química , Relação Estrutura-Atividade
16.
Biochimie ; 135: 6-14, 2017 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-28082125

RESUMO

Sedimentation equilibrium and size-exclusion chromatography experiments on Mycobacterium tuberculosis hypoxanthine-guanine phosphoribosyltransferase (MtHGPRT) have established the existence of this enzyme as a reversibly associating mixture of dimeric and tetrameric species in 0.1 M Tris-HCl-0.012 M MgCl2, pH 7.4. Displacement of the equilibrium position towards the larger oligomer by phosphate signifies the probable existence of MtHGPRT as a tetramer in the biological environment. These data thus add credibility to the relevance of considering enzyme function in the light of a published tetrameric structure deduced from X-ray crystallography. Failure of 5-phospho-α-d-ribosyl-1-pyrophosphate (PRib-PP) to perturb the dimer-tetramer equilibrium position indicates the equivalence and independence of binding for this substrate (the first to bind in an ordered sequential mechanism) to the two oligomers. By virtue of the displacement of the equilibrium position towards dimer that is affected by removing MgCl2 from the Tris-HCl buffer, it can be concluded that divalent metal ions, as well as phosphate, can affect the oligomerization. These characteristics of MtHGPRT in solution are correlated with published crystal structures of four enzyme-ligand complexes.


Assuntos
Hipoxantina Fosforribosiltransferase/química , Hipoxantina Fosforribosiltransferase/metabolismo , Mycobacterium tuberculosis/enzimologia , Cloreto de Magnésio/farmacologia , Conformação Proteica/efeitos dos fármacos , Multimerização Proteica/efeitos dos fármacos
17.
Sci Rep ; 6: 35894, 2016 10 27.
Artigo em Inglês | MEDLINE | ID: mdl-27786284

RESUMO

Human African Trypanosomiasis (HAT) is a life-threatening infectious disease caused by the protozoan parasite, Trypanosoma brucei (Tbr). Due to the debilitating side effects of the current therapeutics and the emergence of resistance to these drugs, new medications for this disease need to be developed. One potential new drug target is 6-oxopurine phosphoribosyltransferase (PRT), an enzyme central to the purine salvage pathway and whose activity is critical for the production of the nucleotides (GMP and IMP) required for DNA/RNA synthesis within this protozoan parasite. Here, the first crystal structures of this enzyme have been determined, these in complex with GMP and IMP and with three acyclic nucleoside phosphonate (ANP) inhibitors. The Ki values for GMP and IMP are 30.5 µM and 77 µM, respectively. Two of the ANPs have Ki values considerably lower than for the nucleotides, 2.3 µM (with guanine as base) and 15.8 µM (with hypoxanthine as base). The crystal structures show that when two of the ANPs bind, they induce an unusual conformation change to the loop where the reaction product, pyrophosphate, is expected to bind. This and other structural differences between the Tbr and human enzymes suggest selective inhibitors for the Tbr enzyme can be designed.


Assuntos
Hipoxantina Fosforribosiltransferase/antagonistas & inibidores , Hipoxantina Fosforribosiltransferase/química , Proteínas de Protozoários/antagonistas & inibidores , Proteínas de Protozoários/química , Trypanosoma brucei brucei/enzimologia , Sequência de Aminoácidos , Animais , Domínio Catalítico , Cristalografia por Raios X , Inibidores Enzimáticos/farmacologia , Humanos , Hipoxantina Fosforribosiltransferase/genética , Cinética , Modelos Moleculares , Conformação Proteica , Proteínas de Protozoários/genética , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Homologia de Sequência de Aminoácidos , Especificidade da Espécie , Tripanossomicidas/farmacologia , Trypanosoma brucei brucei/efeitos dos fármacos , Trypanosoma brucei brucei/genética , Trypanosoma cruzi/enzimologia , Trypanosoma cruzi/genética
18.
ChemMedChem ; 10(10): 1707-23, 2015 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-26368337

RESUMO

Acyclic nucleoside phosphonates (ANPs) are a promising class of antimalarial therapeutic drug leads that exhibit a wide variety of Ki values for Plasmodium falciparum (Pf) and human hypoxanthine-guanine-(xanthine) phosphoribosyltransferases [HG(X)PRTs]. A novel series of ANPs, analogues of previously reported 2-(phosphonoethoxy)ethyl (PEE) and (R,S)-3-hydroxy-2-(phosphonomethoxy)propyl (HPMP) derivatives, were designed and synthesized to evaluate their ability to act as inhibitors of these enzymes and to extend our ongoing antimalarial structure-activity relationship studies. In this series, (S)-3-hydroxy-2-(phosphonoethoxy)propyl (HPEP), (S)-2-(phosphonomethoxy)propanoic acid (CPME), or (S)-2-(phosphonoethoxy)propanoic acid (CPEE) are the acyclic moieties. Of this group, (S)-3-hydroxy-2-(phosphonoethoxy)propylguanine (HPEPG) exhibits the highest potency for PfHGXPRT, with a Ki value of 0.1 µM and a Ki value for human HGPRT of 0.6 µM. The crystal structures of HPEPG and HPEPHx (where Hx=hypoxanthine) in complex with human HGPRT were obtained, showing specific interactions with active site residues. Prodrugs for the HPEP and CPEE analogues were synthesized and tested for in vitro antimalarial activity. The lowest IC50 value (22 µM) in a chloroquine-resistant strain was observed for the bis-amidate prodrug of HPEPG.


Assuntos
Antimaláricos/farmacologia , Inibidores Enzimáticos/farmacologia , Hipoxantina Fosforribosiltransferase/antagonistas & inibidores , Nucleosídeos/farmacologia , Organofosfonatos/farmacologia , Plasmodium falciparum/enzimologia , Antimaláricos/síntese química , Antimaláricos/química , Relação Dose-Resposta a Droga , Inibidores Enzimáticos/síntese química , Inibidores Enzimáticos/química , Humanos , Hipoxantina Fosforribosiltransferase/metabolismo , Modelos Moleculares , Estrutura Molecular , Nucleosídeos/síntese química , Nucleosídeos/química , Organofosfonatos/síntese química , Organofosfonatos/química , Testes de Sensibilidade Parasitária , Plasmodium falciparum/efeitos dos fármacos , Relação Estrutura-Atividade
19.
Bioorg Med Chem ; 23(17): 5502-10, 2015 Sep 01.
Artigo em Inglês | MEDLINE | ID: mdl-26275679

RESUMO

Acyclic nucleoside phosphonates (ANPs) that contain a 6-oxopurine base are good inhibitors of the human and Plasmodium falciparum 6-oxopurine phosphoribosyltransferases (PRTs), key enzymes of the purine salvage pathway. Chemical modifications, based on the crystal structures of several inhibitors in complex with the human PRTase, led to the design of a new class of inhibitors--the aza-ANPs. Because of the negative charges of the phosphonic acid moiety, their ability to cross cell membranes is, however, limited. Thus, phosphoramidate prodrugs of the aza-ANPs were prepared to improve permeability. These prodrugs arrest parasitemia with IC50 values in the micromolar range against Plasmodium falciparum-infected erythrocyte cultures (both chloroquine-sensitive and chloroquine-resistant Pf strains). The prodrugs exhibit low cytotoxicity in several human cell lines. Thus, they fulfill two essential criteria to qualify them as promising antimalarial drug leads.


Assuntos
Antimaláricos/metabolismo , Inibidores Enzimáticos/metabolismo , Hipoxantina Fosforribosiltransferase/antagonistas & inibidores , Malária/tratamento farmacológico , Nucleotídeos/metabolismo , Organofosfonatos/química , Humanos , Modelos Moleculares , Pró-Fármacos
20.
J Med Chem ; 58(11): 4822-38, 2015 Jun 11.
Artigo em Inglês | MEDLINE | ID: mdl-25915781

RESUMO

Human tuberculosis is a chronic infectious disease affecting millions of lives. Because of emerging resistance to current medications, new therapeutic drugs are needed. One potential new target is hypoxanthine-guanine phosphoribosyltransferase (MtHGPRT), a key enzyme of the purine salvage pathway. Here, newly synthesized acyclic nucleoside phosphonates (ANPs) have been shown to be competitive inhibitors of MtHGPRT with Ki values as low as 0.69 µM. Prodrugs of these compounds arrest the growth of a virulent strain of M. tuberculosis with MIC50 values as low as 4.5 µM and possess low cytotoxicity in mammalian cells (CC50 values as high as >300 µM). In addition, the first crystal structures of MtHGPRT (2.03-2.76 Å resolution) have been determined, three of these in complex with novel ANPs and one with GMP and pyrophosphate. These data provide a solid foundation for the further development of ANPs as selective inhibitors of MtHGPRT and as antituberculosis agents.


Assuntos
Antituberculosos/farmacologia , Difosfatos/metabolismo , Guanosina Monofosfato/metabolismo , Hipoxantina Fosforribosiltransferase/metabolismo , Mycobacterium tuberculosis/efeitos dos fármacos , Organofosfonatos/metabolismo , Pró-Fármacos/farmacologia , Tuberculose/tratamento farmacológico , Sequência de Aminoácidos , Antineoplásicos/química , Antineoplásicos/farmacologia , Antituberculosos/química , Domínio Catalítico , Proliferação de Células/efeitos dos fármacos , Cristalografia por Raios X , Difosfatos/química , Inibidores Enzimáticos/química , Inibidores Enzimáticos/farmacologia , Guanosina Monofosfato/química , Humanos , Hipoxantina Fosforribosiltransferase/química , Neoplasias Pulmonares/tratamento farmacológico , Neoplasias Pulmonares/patologia , Modelos Moleculares , Dados de Sequência Molecular , Estrutura Molecular , Mycobacterium tuberculosis/enzimologia , Organofosfonatos/química , Pró-Fármacos/química , Conformação Proteica , Homologia de Sequência de Aminoácidos , Relação Estrutura-Atividade , Tuberculose/microbiologia , Células Tumorais Cultivadas
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