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1.
Curr Microbiol ; 81(4): 105, 2024 Feb 23.
Artigo em Inglês | MEDLINE | ID: mdl-38393402

RESUMO

A bacterium designated GXH0434T was isolated from sea shore samples collected from Weizhou Island, Beihai, Guangxi, China. The organism is motile, strictly aerobic, and possesses a rod-coccus cell cycle in association with the growth phase. It can grow at 15-45 °C (optimum 37 °C), at pH 6.0-11.0 (optimum 6.0), and at 0-20% (w/v) NaCl (optimum 5.0-8.0%). The strain is positive for peroxidase and oxidase activity, negative for Voges-Proskauer test, can hydrolyze Tween 20, Tween 60, Tween 80, casein, and is able to produce siderophore and has the function of nitrogen fixation. Molecular phylogenetic analysis based on 16S rRNA gene sequences indicated that GXH0434T was most closely related to Microbulbifer halophilus KCTC 12848T with the similarity of 97.2%, followed by Microbulbifer chitinilyticus JCM 16148T (97.1%) and Microbulbifer taiwanensis LMG 26125T (96.5%). The digital DNA-DNA hybridization and the average nucleotide identity values between GXH0434T and Microbulbifer halophilus KCTC 12848T were 28.90% and 83.38%, respectively, which were below thresholds of species delineation. The genomic DNA G+C content of the strain was 61.9%. The major fatty acids were iso-C15:0, C16:0, iso-C11:0 3-OH, iso-C11:0 and Summed features 8 (C18:0 ω7c and/or C18:0 ω6c). The major polar lipids detected in GXH0434T were diphosphatidylglycerol (DPG), phosphatidylethanolamine (PE), phosphatidylglycerol (PG), phosphatidylcholine (PC). The major respiratory quinone was ubiquinone Q-8. Based on the above polyphasic classification indicated strain GXH0434T represents a novel species of the genus Microbulbifer, for which the name Microbulbifer litoralis sp. nov. is proposed. The type strain is GXH0434T (= MCCC 1K07158T = KCTC 92169T).


Assuntos
Alteromonadaceae , Gammaproteobacteria , Filogenia , RNA Ribossômico 16S/genética , China , Alteromonadaceae/genética , Ácidos Graxos/química , DNA Bacteriano/genética , Análise de Sequência de DNA , Técnicas de Tipagem Bacteriana , Fosfolipídeos/química
2.
Curr Microbiol ; 80(2): 55, 2022 Dec 31.
Artigo em Inglês | MEDLINE | ID: mdl-36585981

RESUMO

A Gram-stain-positive, rod-shaped, facultatively anaerobic, motile and spore-forming bacterium with multiple flagella designated GXH0341T was isolated from the soil associated with decayed pine tree samples collected from Weizhou Island, Beihai, Guangxi, China. Growth occurred at 4-37 °C (optimum 30 °C), at pH 5.0-11.0 (optimum 8.0) and in the presence of 0-7% (w/v) NaCl (optimum 2%). Phylogenetic analysis based on 16S rRNA gene sequences indicated that strain GXH0341T was most closely related to Bacillus mesophilus DSM 101000 T (98.9%), followed by Bacillus salitolerans KC1T (96.95%) and Margalitia shackletonii DSM 18435 T (96.67%). Phylogenetic analysis revealed that strain GXH0341T represented a separate lineage within the genus Bacillus. Peroxidase is positive. The predominant quinone was MK-7 and the cell-wall diagnostic diamino acid was meso-diaminopimelic acid. The predominant polar lipids are diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylglycerol, phosphatidylcholine, and two unidentified phospholipids. The major fatty acids are iso-C14:0, iso-C15:0, anteiso-C15:0 and iso-C16:0. The genome of GXH0341T comprises the biosynthetic gene cluster for T3PKS, terpene, lassopeptide and RRE-containing element as secondary metabolites. The average nucleotide identity values and the digital DNA-DNA hybridization values between GXH0341T and B. mesophilus DSM 101000 T were 78.22% and 21.00%, respectively, which were in the range of the recommended level for interspecies identity. The results of phenotypic, chemotaxonomic and genotypic analyses clearly indicated strain GXH0341T represents a novel species of the genus Bacillus, for which the name Bacillus pinisoli sp. nov. is proposed. The type strain is GXH0341T (= MCCC 1K07157T = JCM 35212 T).


Assuntos
Bacillus , Solo , Filogenia , RNA Ribossômico 16S/genética , China , Fosfolipídeos/química , Ácidos Graxos/química , DNA , Análise de Sequência de DNA , DNA Bacteriano/genética , Técnicas de Tipagem Bacteriana
3.
Arch Microbiol ; 204(6): 298, 2022 May 05.
Artigo em Inglês | MEDLINE | ID: mdl-35513460

RESUMO

A novel bacterium of the genus Pontibacter, designated GY10130T, was isolated from rhizosphere soil of a mangrove plant Rhizophora stylosa collected from Guangxi province, China. Strain GY10130T was Gram-stain negative, positive for oxidase activities, aerobic, short rod-shaped cells without flagella. Growth was observed at 10-40 °C (optimum, 28 °C), pH 6.0-9.0 (optimum, 7.0) and NaCl concentrations of 0-4% (optimum, 1%). Strain GY10130T is closely related to members of the genus Pontibacter, namely P. beigongshangensis CGMCC 1.17104T (97.8%) and P. amylolyticus CGMCC 1.12749T (95.0%), P. humi SWU8T (94.7%), and less than 94.0% with other currently described type strains of Pontibacter. The strain GY10130T showed an ANI value of 80.6% and dDDH value of 23.2% with P. beigongshangensis CGMCC 1.17104T, followed by P. amylolyticus CGMCC 1.12749T with ANI and dDDH values of 72.9 and 13.8%, respectively. Strain GY10130T contains carotenoid-like pigments, but flexirubin-type pigments were absent. The cellular fatty acids (> 10%) consist of summed feature 4 (17:1 iso I/anteiso B) and iso-C15:0. The predominant menaquinone is MK-7. The polar lipids comprise phosphatidylethanolamine, two unidentified glycolipids, two unidentified aminolipids and six unidentified phospholipids. The genome length of strain GY10130T was 6.2 Mbp with a DNA G + C content of 47.1 mol% and 4727 protein-coding genes. The result of polyphasic taxonomic study show strain GY10130T represents one novel species of Pontibacter, Pontibacter qinzhouensis sp. nov., with the type strain GY10130T (=NBRC 113901T = CGMCC 1.16772T).


Assuntos
Rhizophoraceae , Técnicas de Tipagem Bacteriana , Bacteroidetes/genética , China , DNA Bacteriano/genética , Ácidos Graxos/química , Filogenia , RNA Ribossômico 16S/genética , Rizosfera , Análise de Sequência de DNA , Solo , Vitamina K 2/química
4.
Mar Pollut Bull ; 146: 134-144, 2019 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-31426141

RESUMO

With the status as the world's top contributor of marine plastic debris, Indonesia has committed to reduce marine plastic debris up to 70% in 2025 by establishing the National Action Plan (NAP) on Marine Debris. The high amount of marine plastic debris as a result of transport and accumulation become a complex issue in Indonesia due to its ocean-atmospheric circulation, high population of coastal communities, and marine activities. Based on our findings, there are gap of publications related to marine debris in Indonesia that had been already published. Marine debris is ubiquitous and transboundary, as they were found in marine environment and transported by currents to various direction including uninhabited islands, thus, we propose more comprehensive future research about the impact of marine debris on ecosystem (e.g. biological impact of organisms in the water column, ecological alteration in distribution pattern, and invasive species), human health, and economic loss.


Assuntos
Resíduos , Poluição da Água/análise , Ecossistema , Meio Ambiente , Monitoramento Ambiental , Humanos , Indonésia , Plásticos/análise , Resíduos/análise , Poluentes Químicos da Água/análise
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