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1.
Hemoglobin ; 31(4): 439-52, 2007.
Artigo em Inglês | MEDLINE | ID: mdl-17994378

RESUMO

We studied 325 thalassemia intermedia patients from Iran, India, Pakistan, Thailand, Mauritius and Cyprus to examine factors which influence the phenotype. The beta-thalassemia (thal) mutations were determined for 219 beta-thal/beta-thal and 106 beta-thal/Hb E [beta26(B8)Glu-->Lys, GAG-->AAG] thalassemia intermedia patients. Thirty-one different mutations were identified, and their combination gave rise to more than 44 different genotypes, of which 14 (31.8%) had the beta(0)/beta(0), 21 (47.7%) the beta(0)/beta(+) and nine (20.5%) the beta(+)/beta(+) types. Thus, the beta(+)-thal mutations were present in 68.2% of patients. alpha-Thalassemia mutations were present in frequencies higher than in the general population of all ethnic groups studied, as 45% of the patients carried alpha-thal mutations. Correlation of alpha-thal mutations with beta-globin mutations showed that the alpha-thal mutations were mainly co-inherited with the beta(+)-thal mutations. The XmnI (G)gamma polymorphic site at -158 (C-->T) was positive (T) in nine (8.8%) of 102 patients of the beta(+)/beta(+) genotype, and the percentage of both XmnI (G)gamma polymorphism [+/-] (T/C) and [+/+] (T/T) genotypes increased to 42.9 and 87.3, respectively, in the beta(0)/beta(+) and beta(0)/beta(0) patients. This polymorphism was found in the majority of beta(+)-thal/Hb E compound heterozygote patients (88.6%), and beta(0)-thal/Hb E patients (84.8%), suggesting that it could be linked to the Hb E chromosome. Therefore, the XmnI (G)gamma polymorphism at -158 (C-->T) was associated with beta(0)-thal mutations as well as the Hb E chromosome. The present study demonstrates that in cases of thalassemia intermedia with beta(+) mutations, the common ameliorating factor is the presence of alpha-thal mutations, while in cases with beta(0) mutations, the common ameliorating factor is the presence of the XmnI (G)gamma polymorphism at -158 (C-->T).


Assuntos
Mutação , Talassemia alfa/etnologia , Talassemia alfa/genética , Talassemia beta/etnologia , Talassemia beta/genética , Etnicidade , Genótipo , Humanos , Fenótipo , Polimorfismo Genético
2.
Int J Mol Med ; 17(6): 1011-6, 2006 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-16685409

RESUMO

Here we report a method for efficient transfection of in vitro-transcribed mRNA into two different types of human adherent cells, the neuroblastoma cell line SK-N-AS, and the transformed kidney cell line HEK293. By using newly trypsinized adherent cells in suspension and Lipofectaminetrade mark 2000, we detected a transfection efficiency of 80-90% in both cell lines and a cell viability of 90% in SK-N-AS and 60% in HEK293, 24 h after transfection when using cytoplasmic enhanced green fluorescent protein (EGFP)-mRNA. We have evaluated the different effects of the generally used EGFP that mainly localizes to the cytoplasm and nuclear EGFP, where the nuclear EGFP are more toxic to the cells than the cytoplasmic EGFP. In order to develop a null experiment, we constructed a short non-functional mRNA including a nuclear localization signal and evaluated the concentrations at which mRNA encoding nuclear proteins can be added without a general toxicity, depending on the fact that the proteins are localized to the nucleus. For both SK-N-AS and HEK293 cells, a concentration of up to 100 ng mRNA in 10(5) cells, encoding a nuclear protein with no other function, did not affect the cells. For evaluation of the method, we screened four different human mRNAs, PDG, DFFA, CORT and PEX14, for their ability to affect cell proliferation in these cells. PEX14 was the only gene that significantly (p=0.03) reduced cell proliferation for both cell types, DFFA significantly (p=0.04) reduced cell proliferation in SK-N-AS but not in HEK293 cells. PGD and CORT did not have any effect on cell proliferation. We have developed an easy method for efficient delivery of in vitro-transcribed mRNA into the adherent cell lines, SK-N-AS and HEK293. This method is useful for a quick screening of how different genes affect cell proliferation.


Assuntos
Núcleo Celular/química , Citoplasma/química , Proteínas de Fluorescência Verde/análise , Proteínas de Fluorescência Verde/toxicidade , RNA Mensageiro/genética , Transfecção/métodos , Sequência de Aminoácidos , Linhagem Celular Tumoral , Proliferação de Células , Proteínas de Fluorescência Verde/genética , Humanos , Dados de Sequência Molecular , Sinais de Localização Nuclear/genética , RNA Mensageiro/biossíntese , Tripsina/farmacologia
3.
Genomics ; 88(3): 309-15, 2006 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-16631345

RESUMO

Hemoglobin E (HbE) is caused by a G-->A mutation at codon 26 of the beta-globin gene, which substitutes Glu-->Lys. This mutation gives rise to functional but unstable hemoglobin and activates a cryptic splice site causing mild anemia. HbE reaches a carrier frequency of 60-80% in some Southeast Asian populations. HbE causes serious disease when co-inherited with a beta-thalassemia mutation. In this study, we report the creation and evaluation of humanized transgenic mice containing the beta(E) mutation in the context of the human beta-globin locus. Developmental expression of the human beta(E) locus transgene partially complements the hematological abnormalities in heterozygous knockout mice ((mu)beta(th-3/+)) and rescues the embryonic lethality of homozygous knockout mice ((mu)beta(th-3/th-3)). The phenotype of rescued mice was dependent on the transgene copy number. This mouse model displays hematological abnormalities similar to HbE/beta-thalassemia patients and represent an ideal in vivo model system for pathophysiological studies and evaluation of novel therapies.


Assuntos
Dosagem de Genes , Hemoglobina E/genética , Mutação Puntual , Transgenes , Talassemia beta/genética , Animais , Modelos Animais de Doenças , Humanos , Camundongos , Camundongos Transgênicos , Fenótipo , Talassemia beta/patologia , Talassemia beta/terapia
4.
J Biol Chem ; 281(11): 7399-405, 2006 Mar 17.
Artigo em Inglês | MEDLINE | ID: mdl-16421096

RESUMO

Splicing mutations are common causes of beta-thalassemia. Some splicing mutations permit normal splicing as well as aberrant splicing, which can give a reduced level of normal beta-globin synthesis causing mild disease (thalassemia intermedia). For other mutations, normal splicing is reduced to low levels, and patients are transfusion-dependent when homozygous for the disease. The development of therapies for beta-thalassemia will require suitable mouse models for preclinical studies. In this study, we report the generation of a humanized mouse model carrying the common IVSI-110 splicing mutation on a BAC including the human beta-globin ((hu)beta-globin) locus. We examined heterozygous murine beta-globin knock-out mice ((mu)beta(th-3/+)) carrying either the IVSI-110 or the normal (hu)beta-globin locus. Our results show a 90% decrease in (hu)beta-globin chain synthesis in the IVSI-110 mouse model compared with the mouse model carrying the normal (hu)beta-globin locus. This notable difference is attributed to aberrant splicing. The humanized IVSI-110 mouse model accurately recapitulates the splicing defect found in comparable beta-thalassemia patients. This mouse model is available as a platform for testing strategies for the restoration of normal splicing.


Assuntos
Mutação , Talassemia beta/genética , Processamento Alternativo , Sequência de Aminoácidos , Animais , Sequência de Bases , Modelos Animais de Doenças , Teste de Complementação Genética , Genótipo , Globinas/química , Globinas/genética , Globinas/metabolismo , Hemoglobinas/química , Hemoglobinas/metabolismo , Heterozigoto , Homozigoto , Humanos , Hibridização in Situ Fluorescente , Camundongos , Camundongos Endogâmicos C57BL , Camundongos Transgênicos , Modelos Genéticos , Dados de Sequência Molecular , Reação em Cadeia da Polimerase , Splicing de RNA , Reação em Cadeia da Polimerase Via Transcriptase Reversa , Transgenes
5.
BMC Cancer ; 5: 161, 2005 Dec 16.
Artigo em Inglês | MEDLINE | ID: mdl-16359544

RESUMO

BACKGROUND: Neuroblastoma is a solid tumour of childhood often with an unfavourable outcome. One common genetic feature in aggressive tumours is 1p-deletion. The alpha-enolase (ENO1) gene is located in chromosome region 1p36.2, within the common region of deletion in neuroblastoma. One alternative translated product of the ENO1 gene, known as MBP-1, acts as a negative regulator of the c-myc oncogene, making the ENO1 gene a candidate as a tumour suppressor gene. METHODS: Methods used in this study are transfection of cDNA-vectors and in vitro transcribed mRNA, cell growth assay, TUNEL-assay, real-time RT-PCR (TaqMan) for expression studies, genomic sequencing and DHPLC for mutation detection. RESULTS: Here we demonstrate that transfection of ENO1 cDNA into 1p-deleted neuroblastoma cell lines causes' reduced number of viable cells over time compared to a negative control and that it induces apoptosis. Interestingly, a similar but much stronger dose-dependent reduction of cell growth was observed by transfection of in vitro transcribed ENO1 mRNA into neuroblastoma cells. These effects could also be shown in non-neuroblastoma cells (293-cells), indicating ENO1 to have general tumour suppressor activity. Expression of ENO1 is detectable in primary neuroblastomas of all different stages and no difference in the level of expression can be detected between 1p-deleted and 1p-intact tumour samples. Although small numbers (11 primary neuroblastomas), there is some evidence that Stage 4 tumours has a lower level of ENO1-mRNA than Stage 2 tumours (p = 0.01). However, mutation screening of 44 primary neuroblastomas of all different stages, failed to detect any mutations. CONCLUSION: Our studies indicate that ENO1 has tumour suppressor activity and that high level of ENO1 expression has growth inhibitory effects.


Assuntos
Apoptose , Biomarcadores Tumorais/metabolismo , Proteínas de Ligação a DNA/metabolismo , Neuroblastoma/metabolismo , Fosfopiruvato Hidratase/metabolismo , RNA Mensageiro/metabolismo , Transcrição Gênica , Proteínas Supressoras de Tumor/metabolismo , Proteínas Reguladoras de Apoptose/fisiologia , Linhagem Celular , Linhagem Celular Tumoral , Proliferação de Células , Análise Mutacional de DNA , DNA Complementar/metabolismo , Deleção de Genes , Genes Supressores de Tumor , Vetores Genéticos , Genoma , Humanos , Marcação In Situ das Extremidades Cortadas , Técnicas In Vitro , Modelos Genéticos , Mutação , Neuroblastoma/genética , RNA Interferente Pequeno/metabolismo , Reação em Cadeia da Polimerase Via Transcriptase Reversa , Transfecção , Células Tumorais Cultivadas
6.
Mamm Genome ; 16(11): 847-53, 2005 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-16284800

RESUMO

A 191-kb human bacterial artificial chromosome (BAC) containing the human alpha-globin genomic locus was used to generate transgenic mice that express, exclusively, human alpha-globin ((hu)alpha-globin). Expression of (hu)alpha-globin reaches a level of 36% of that of endogenous mouse alpha-globin ((mu)alpha-globin) on a heterozygous mouse alpha-thalassemia background ((mu)alpha-globin knockout, (mu)alpha(+/-)). Hemizygous transgenic mice carrying the (hu)alpha-globin locus on a heterozygous knockout background ((hu)alpha(+/0), (mu)alpha(++/--)) demonstrated complementation of most hematologic parameters. By crossing (hu)alpha(+/0), (mu)alpha(++/--) mice, we were able to generate mice entirely dependent on (hu)alpha-globin synthesis. Breeding and fluorescent in situ hybridization studies demonstrate that only mice homozygous for the transgene were able to rescue embryonic lethal homozygous (mu)alpha-globin knockout embryos ((mu)alpha(--/--)). Adult rescued mice produce hemoglobin at levels similar to wild-type mice, with partial red cell complementation based on mean corpuscular volume (MCV), mean corpuscular hemoglobin (MCH), and red cell distribution width (RDW) measurements. Significant erythrocythemia above wild-type levels seems to be the main compensatory mechanism for the normalization of the hemoglobin levels in the rescued animals. Our studies demonstrate that the (hu)alpha-globin locus in the 191-kb transgene contains all the necessary elements for the regulated expression of (hu)alpha-globin in transgenic mice. This animal model should be valuable for studying the mechanisms regulating (hu)alpha-globin production and for development of therapeutic strategies for beta-thalassemia based on downregulation of alpha-globin expression.


Assuntos
Cromossomos Artificiais Bacterianos/genética , Globinas/genética , Transgenes/genética , Talassemia alfa/genética , Animais , Cromatografia Líquida de Alta Pressão , Cromossomos de Mamíferos/genética , Cruzamentos Genéticos , Modelos Animais de Doenças , Globinas/deficiência , Humanos , Hibridização in Situ Fluorescente , Camundongos , Camundongos Knockout , Camundongos Transgênicos
7.
Genomics ; 85(4): 453-61, 2005 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-15780748

RESUMO

Accurate animal models that recapitulate the phenotype and genotype of patients with beta-thalassemia would enable the development of a range of possible therapeutic approaches. Here we report the generation of a mouse model carrying the codons 41-42 (-TTCT) beta-thalassemia mutation in the intact human beta-globin locus. This mutation accounts for approximately 40% of beta-thalassemia mutations in southern China and Thailand. We demonstrate a low level of production of gamma-globins from the mutant locus in day 18 embryos, as well as production of mutant human beta-globin mRNA. However, in contrast to transgenic mice carrying the normal human beta-globin locus, 4-bp deletion mice fail to show any phenotypic complementation of the knockout mutation of both murine beta-globin genes. Our studies suggest that this is a valuable model for gene correction in hemopoietic stem cells and for studying the effects of HbF inducers in vivo in a "humanized" thalassemic environment.


Assuntos
Modelos Animais de Doenças , Globinas/genética , Camundongos/genética , Deleção de Sequência , Talassemia beta/genética , Animais , Embrião de Mamíferos/anormalidades , Eritrócitos Anormais/citologia , Expressão Gênica , Globinas/análise , Globinas/metabolismo , Humanos , Camundongos Knockout , Fenótipo , Transgenes
8.
Transgenic Res ; 13(3): 235-43, 2004 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-15359601

RESUMO

alpha-thalassaemia is an inherited blood disorder caused by a decrease in the synthesis of alpha-globin due to mutations in one or both of the alpha-globin genes located on human chromosome 16. A 191 kb transgene derived from a sequenced bacterial artificial chromosome (BAC) clone carrying the human alpha-globin gene cluster, together with about 100 kb of sequence upstream of DNase1 hypersensitive site HS-40 and 30 kb downstream of the alpha1-globin gene, was introduced into fertilised mouse oocytes by pronuclear microinjection. Three transgenic founder mice were obtained. Analysis of one transmitting line by fluorescent in situ hybridisation and quantitative PCR demonstrated a single copy integration of the human alpha-globin transgene on chromosome 1. Analysis of haemoglobins from the peripheral blood by cellulose acetate electrophoresis and high performance liquid chromatography (HPLC) demonstrated synthesis of human alpha-globin to about 36% of the level of each mouse alpha-globin locus. Breeding of transgenic mice with mice heterozygous for a knockout (KO) deletion of both murine alpha-globin genes showed that the human alpha-globin locus restored haemoglobin levels and red cell distribution width to normal in double heterozygous mice and significantly normalised other haematological parameters. Interestingly the human transgene also induced a significant increase in red cell production and haematocrit above wild type values. This is the first report demonstrating complementation of a murine alpha-globin KO mutation by human alpha-globin gene expression from an intact human alpha-globin locus. The transgenic mouse model described in this report should be very useful for the study of human alpha-globin gene regulation and for the development of strategies to down regulate alpha-globin production as a means of ameliorating the severity of beta-thalassaemia.


Assuntos
Modelos Animais de Doenças , Globinas/genética , Globinas/metabolismo , Talassemia alfa/genética , Animais , Cromatografia Líquida de Alta Pressão , Cromossomos Artificiais Bacterianos , Cruzamentos Genéticos , Primers do DNA , Eletroforese em Acetato de Celulose , Componentes do Gene , Teste de Complementação Genética , Hematócrito , Hemoglobinas/química , Humanos , Hibridização in Situ Fluorescente , Camundongos , Camundongos Knockout , Camundongos Transgênicos , Microinjeções , Transgenes/genética
9.
Proc Natl Acad Sci U S A ; 101(8): 2446-51, 2004 Feb 24.
Artigo em Inglês | MEDLINE | ID: mdl-14983029

RESUMO

During the differentiation of naïve CD4+ precursors to T helper 1 (Th1) or Th2 effector cells, several epigenetic changes occur in a lineage-specific manner at the IFN-gamma or IL-4/IL-13 loci. These changes result in alterations in the chromatin structure of these loci and, hence, lineage-restricted expression of the corresponding cytokines. Intergenic transcripts have recently been shown to regulate the expression of genes in the beta-globin locus; therefore, we have examined the Th2 cytokine gene cluster during human Th1/Th2 differentiation and in a transgenic mouse line containing the human IL-4/IL-13 genes for intergenic transcripts. We show for the first time that intergenic transcription of this locus is restricted to tissues and lineages in which IL-4 and IL-13 are expressed. We also show that intergenic transcription in the IL-4/IL-13 locus is up-regulated after Th2 differentiation. Furthermore, we demonstrate that the Th2 cytokines and intergenic transcripts are detectable in the thymus. We propose that intergenic transcription is tightly associated with transcriptional competence for the Th2 cytokines and may play a role in their regulation. These results support a progressive differentiation model of T cell lineage commitment.


Assuntos
Regulação da Expressão Gênica/imunologia , Interleucina-13/genética , Interleucina-4/genética , Íntrons/genética , Transcrição Gênica/imunologia , Animais , Sequência de Bases , Linfócitos T CD4-Positivos/imunologia , Técnicas de Cultura de Células , Primers do DNA , Humanos , Camundongos , Camundongos Transgênicos , Família Multigênica , Reação em Cadeia da Polimerase , Mapeamento por Restrição , Células Th1/imunologia , Células Th2/imunologia
11.
Cell Transplant ; 13(7-8): 765-73, 2004.
Artigo em Inglês | MEDLINE | ID: mdl-15690978

RESUMO

Metabolic liver diseases are excellent targets for correction using novel stem cell, hepatocyte, and gene therapies. In this study, the use of bone marrow stem cell transplantation to correct liver disease in the toxic milk (tx) mouse, a murine model for Wilson's disease, was evaluated. Preconditioning with sublethal irradiation, dietary copper loading, and the influence of cell transplantation sites were assessed. Recipient tx mice were sublethally irradiated (4 Gy) prior to transplantation with bone marrow stem cells harvested from normal congenic (DL) littermates. Of 46 transplanted tx mice, 11 demonstrated genotypic repopulation in the liver. Sublethal irradiation was found to be essential for donor cell engraftment and liver repopulation. Dietary copper loading did not improve cell engraftment and repopulation results. Both intravenously and intrasplenically transplanted cells produced similar repopulation successes. Direct evidence of functionality and disease correction following liver repopulation was observed in the 11 mice where liver copper levels were significantly reduced when compared with mice with no liver repopulation. The reversal of copper loading with bone marrow cells is similar to the level of correction seen when normal congenic liver cells are used. Transplantation of bone marrow cells partially corrects the metabolic phenotype in a mouse model for Wilson's disease.


Assuntos
Células da Medula Óssea/fisiologia , Transplante de Medula Óssea/métodos , Degeneração Hepatolenticular/terapia , Regeneração Hepática/fisiologia , Fígado/fisiopatologia , Animais , Células da Medula Óssea/citologia , Células da Medula Óssea/efeitos da radiação , Transplante de Medula Óssea/tendências , Células Cultivadas , Cobre/metabolismo , Cobre/farmacologia , Modelos Animais de Doenças , Alimentos Formulados , Sobrevivência de Enxerto/fisiologia , Sobrevivência de Enxerto/efeitos da radiação , Hepatócitos/citologia , Hepatócitos/fisiologia , Hepatócitos/transplante , Degeneração Hepatolenticular/patologia , Fígado/patologia , Regeneração Hepática/efeitos da radiação , Camundongos , Camundongos Congênicos , Quimera por Radiação , Recuperação de Função Fisiológica/fisiologia , Recuperação de Função Fisiológica/efeitos da radiação , Regeneração/fisiologia , Regeneração/efeitos da radiação , Irradiação Corporal Total
12.
Hum Mol Genet ; 13(2): 223-33, 2004 Jan 15.
Artigo em Inglês | MEDLINE | ID: mdl-14645208

RESUMO

Reactivation of fetal hemoglobin (HbF) expression using pharmacological agents represents a potential strategy for the therapy of beta-thalassemia, sickle cell disease, HbE and other beta-hemoglobinopathies. However, the drugs currently available have low efficacy and specificity and are associated with high toxicity. We describe the development of stable cellular genomic reporter assays (GRAs) based on the green fluorescence protein (EGFP) gene under the Ggamma-globin promoter in the intact human beta-globin locus. We show that human erythroleukemic cell lines stably transfected with a Ggamma-EGFP beta-globin locus construct can maintain a uniform basal level of EGFP expression over long periods of continuous culture and that induction of EGFP expression parallels the induction of the endogenous globin genes. We compared the EGFP-induction potency of a number of chemotherapeutic agents, including histone deacetylase inhibitors and DNA-binding agents. We show that hydroxyurea and butyrate result in moderate levels of induction (70-80%) but with an additive inductive effect. Among the DNA-binding agents tested, cisplatin was the most potent inducer of HbF expression, (442+/-32%), a level which is comparable to hemin (764+/-145%). These results indicate that cellular GRAs containing Ggamma-EGFP-modified beta-globin locus constructs can be used to develop novel inducers of HbF synthesis for the therapy of beta-hemoglobinopathies.


Assuntos
Avaliação Pré-Clínica de Medicamentos/métodos , Hemoglobina Fetal/efeitos dos fármacos , Butiratos/farmacologia , Linhagem Celular , Cisplatino/farmacologia , Inibidores Enzimáticos/farmacologia , Regulação da Expressão Gênica/efeitos dos fármacos , Genes Reporter , Genoma Humano , Globinas/biossíntese , Globinas/efeitos dos fármacos , Globinas/genética , Proteínas de Fluorescência Verde , Hemina/farmacologia , Inibidores de Histona Desacetilases , Humanos , Hidroxiureia/farmacologia , Células K562 , Proteínas Luminescentes/efeitos dos fármacos , Proteínas Luminescentes/genética , Proteínas Luminescentes/metabolismo
13.
J Biol Chem ; 278(52): 52909-13, 2003 Dec 26.
Artigo em Inglês | MEDLINE | ID: mdl-14555645

RESUMO

Methylmalonic aciduria is a human autosomal recessive disorder of organic acid metabolism resulting from a functional defect in the activity of the enzyme methylmalonyl-CoA mutase. Based upon the homology of the human mutase locus with the mouse locus, we have chosen to disrupt the mouse mutase locus within the critical CoA binding domain using gene-targeting techniques to create a mouse model of methylmalonic aciduria. The phenotype of homozygous knock-out mice (mut-/-) is one of early neonatal lethality. Mice appear phenotypically normal at birth and are indistinguishable from littermates. By 15 h of age, they develop reduced movement and suckle less. This is followed by the development of abnormal breathing, and all of the mice with a null phenotype die by 24 h of age. Urinary levels of methylmalonic and methylcitric acids are grossly increased. Measurement of acylcarnitines in blood shows elevation of propionylcarnitine with no change in the levels of acetylcarnitine and free carnitine. Incorporation of [14C]propionate in primary fibroblast cultures from mut-/- mice is reduced to approximately 6% of normal level, whereas there is no detectable synthesis of mut mRNA in the liver. This is the first mouse model that recapitulates the key phenotypic features of mut0 methylmalonic aciduria.


Assuntos
Alquil e Aril Transferases/genética , Carnitina/análogos & derivados , Metilmalonil-CoA Mutase/genética , Erros Inatos do Metabolismo dos Aminoácidos , Animais , Southern Blotting , Carnitina/química , Carnitina/metabolismo , Linhagem Celular , Citratos/química , DNA/metabolismo , Fibroblastos/metabolismo , Genótipo , Homozigoto , Fígado/metabolismo , Ácido Metilmalônico/metabolismo , Metilmalonil-CoA Mutase/metabolismo , Camundongos , Camundongos Knockout , Camundongos Transgênicos , Modelos Genéticos , Fenótipo , Plasmídeos/metabolismo , Estrutura Terciária de Proteína , RNA Mensageiro/metabolismo , Fatores de Tempo
14.
Genomics ; 82(3): 269-79, 2003 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-12906852

RESUMO

The genetic elements that are responsible for establishing a transcriptionally competent, open chromatin structure at a region of the genome that consists only of ubiquitously expressed, housekeeping genes are currently unknown. We demonstrate for the first time through functional analysis in stably transfected tissue culture cells that transgenes containing methylation-free CpG islands spanning the dual divergently transcribed promoters from the human TATA binding protein (TBP)-proteasome component-B1 (PSMB1) and heterogeneous nuclear ribonucleoprotein A2/B1 (HNRPA2B1)-heterochromatin protein 1Hs-gamma (chromobox homolog 3, CBX3) gene loci are sufficient to prevent transcriptional silencing and a variegated expression pattern when integrated within centromeric heterochromatin. In addition, only transgene constructs extending over both the HNRPA2B1 and the CBX3 promoters, and not the HNRPA2B1 promoter alone, were able to confer high and stable long-term EGFP reporter gene expression. These observations suggest that methylation-free CpG islands associated with dual, divergently transcribed promoters possess an independent dominant chromatin opening function and may therefore be major determinants in establishing and maintaining a region of open chromatin at housekeeping gene loci.


Assuntos
Ilhas de CpG , Inativação Gênica/fisiologia , Heterocromatina/fisiologia , Regiões Promotoras Genéticas , Transgenes , Sequência de Bases , Centrômero , Genes Reporter , Ribonucleoproteínas Nucleares Heterogêneas Grupo A-B/genética , Humanos , Dados de Sequência Molecular , Análise de Sequência de DNA , Proteína de Ligação a TATA-Box/genética
15.
Genomics ; 82(1): 68-77, 2003 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-12809677

RESUMO

There is a need for better approaches to allow precise engineering of large genomic BAC DNA fragments, to facilitate the use of intact genomic loci for therapeutic and biotechnology applications. We report an efficient method to insert any modification in any genomic locus, using a human beta-globin locus BAC clone as a model system. The modifications can range from single base changes to large insertions or deletions and leave no operational sequences. A counterselection cassette, consisting of an inducible I-SceI gene, its recognition site, and an antibiotic resistance gene, is inserted into the targeted region using GET Recombination. A PCR fragment carrying the modification but no selectable marker replaces the counterselection cassette in a second round of GET Recombination. The unique I-SceI site in the counterselection cassette is cut by I-SceI endonuclease, strongly selecting against nonrecombinant clones and yielding up to 30% correct recombinants.


Assuntos
Cromossomos Artificiais Bacterianos/genética , Desoxirribonucleases de Sítio Específico do Tipo II/metabolismo , Globinas/genética , Globinas/metabolismo , Recombinação Genética , Sequência de Bases , Células Cultivadas , Cromossomos Artificiais Bacterianos/metabolismo , Desoxirribonucleases de Sítio Específico do Tipo II/genética , Escherichia coli/genética , Regulação Bacteriana da Expressão Gênica , Engenharia Genética , Humanos , Mutagênese Insercional/métodos , Reação em Cadeia da Polimerase/métodos , Proteínas de Saccharomyces cerevisiae
16.
Plasmid ; 49(2): 184-7, 2003 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-12726772

RESUMO

Bacterial artificial chromosome (BAC) cloning systems currently in use generate high quality genomic libraries for gene mapping, identification, and sequencing. However, the most commonly used BAC cloning systems do not facilitate functional studies in eukaryotic cells. To overcome this limitation, we have developed pEBAC190G, a new BAC vector that combines the features of the first generation PAC/BAC vectors with eukaryotic elements that facilitate the transfection, episomal maintenance, and functional analysis of large genomic fragments in eukaryotic cells. A number of different cloning strategies may be used to retrofit genomic fragments from existing libraries into the new vector. The system was tested by the retrofitting of a 170kb NotI genomic fragment from the RPCI-11 BAC library into the NotI site of pEBAC190G. Clones from any eukaryotic genomic library harboured in this vector can be transferred from bacteria directly to eukaryotic cells for functional analysis.


Assuntos
Cromossomos Artificiais Bacterianos , Clonagem Molecular/métodos , Vetores Genéticos , Sequência de Bases , Desoxirribonucleases de Sítio Específico do Tipo II/genética , Células Eucarióticas , Biblioteca Gênica , Metilmalonil-CoA Mutase/genética , Dados de Sequência Molecular , Recombinação Genética
17.
Mol Biotechnol ; 23(1): 29-36, 2003 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-12611267

RESUMO

We describe the use of the GET recombination system with oligonucleotides or single-stranded polymerase chain reaction (PCR) fragments to insert modifications in the human beta-globin locus without counterselection. The method involves recombination between oligonucleotides or denatured PCR fragments and homologous sequences in the beta-globin gene in a clone of 205-kb bacterial artificial chromosome (BAC), based on the inducible expression of the recE, recT, and gam genes. In this method, oligonucleotides or denatured PCR fragments are electroporated directly into cells carrying both the globin BAC and the pGETrec plasmid, after induction of the GET recombination system. Recombinant BAC clones are identified by PCR, using allele-specific amplification for the mutated sequences. We have used this approach to insert a unique restriction site as well as a common thalassemia mutation (stop codon 39, C-->T) into the human beta-globin locus. We have observed the frequency of recombinant clones to be as high as 1 in 100-200 clones. Therefore, this approach provides a simple and efficient method for introducing point mutations and other fine modifications into BACs, and should greatly facilitate the use of BACs for functional studies and therapeutic applications.


Assuntos
Cromossomos Artificiais Bacterianos/genética , Clonagem Molecular/métodos , Globinas/genética , Mutagênese Insercional/métodos , Recombinação Genética , Transplante Homólogo/métodos , Sequência de Bases , Células Cultivadas , Códon , DNA de Cadeia Simples/genética , Escherichia coli/genética , Estudos de Viabilidade , Regulação Bacteriana da Expressão Gênica , Humanos , Dados de Sequência Molecular , Desnaturação de Ácido Nucleico , Oligonucleotídeos/genética , Mutação Puntual , Reação em Cadeia da Polimerase/métodos , Controle de Qualidade , Proteínas Recombinantes/genética , Talassemia/genética
18.
Hum Mutat ; 20(5): 406, 2002 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-12402345

RESUMO

Mutase-deficient (MUT) methylmalonic aciduria (MMA) is an autosomal recessive inborn error of organic acid metabolism, resulting from a functional defect in the nuclear encoded mitochondrial enzyme methylmalonyl-CoA mutase (MCM) (EC.5.4.99.2). The enzyme requires 5'-deoxyadenosylcobalamin as a cofactor. Isolated MMA results from either apoenzyme or cofactor defects, and is classified into several genotypic classes and complementation groups. These are designated mut(-) or mut(0) (together termed mut), depending on minimal or no apoenzyme activity respectively and cobalamin A or B (cbl A/B) for cofactor defects. To date various studies have identified over 53 disease-causing mutations from patients with mut(0/-) MMA. These are predominantly missense/nonsense nucleotide substitutions. In this study, we report the genotype analysis on 7 patients diagnosed with mut MMA. Five novel mutations were identified (R403stop, 497delG, P615T, 208delG and R467stop) and one novel polymorphism (c712A->G). The previously reported R228Q mutation was found in one patient, who is a compound heterozygote for this mutation and the R467stop mutation. A recently reported N219Y mutation was found in one patient. The 497delG mutation was detected as a homozygous deletion. The remaining mutations were observed in compound heterozygotes, with the second mutation yet to be identified. Many of the unidentified mutations may occur within the promotor or intronic regions.


Assuntos
Erros Inatos do Metabolismo/genética , Ácido Metilmalônico/urina , Metilmalonil-CoA Mutase/deficiência , Metilmalonil-CoA Mutase/genética , Mutação , Genótipo , Humanos , Polimorfismo Genético
19.
Blood ; 100(12): 4209-16, 2002 Dec 01.
Artigo em Inglês | MEDLINE | ID: mdl-12393613

RESUMO

Reactivation of fetal hemoglobin genes has been proposed as a potential therapeutic procedure in patients with beta-thalassemia, sickle cell disease, or other beta-hemoglobinopathies. In vitro model systems based on small plasmid globin gene constructs have previously been used in human and mouse erythroleukemic cell lines to study the molecular mechanisms regulating the expression of the fetal human globin genes and their reactivation by a variety of pharmacologic agents. These studies have led to great insights in globin gene regulation and the identification of a number of potential inducers of fetal hemoglobin. In this study we describe the development of enhanced green fluorescence protein (EGFP) reporter systems based on bacterial artificial chromosomes (EBACs) to monitor the activity of the epsilon-, (G)gamma-, (A)gamma-, delta-, and beta-globin genes in the beta-globin locus. Additionally, we demonstrate that transfection of erythroleukemia cells with our EBACs is greatly enhanced by expression of EBNA1, which also facilitates episomal maintenance of our constructs in human cells. Our studies in human cells have shown physiologically relevant differences in the expression of each of the globin genes and also demonstrate that hemin is a potent inducer of EGFP expression from EGFP-modified epsilon-, (G)gamma-, and (A)gamma-globin constructs. In contrast, the EGFP-modified delta- and beta-globin constructs consistently produced much lower levels of EGFP expression on hemin induction, mirroring the in vivo ontogeny. The EGFP-modified beta-globin eukaryotic BAC (EBAC) vector system can thus be used in erythroleukemia cells to evaluate induction of the epsilon- and gamma-globin genes from the intact human beta-globin locus.


Assuntos
Células Precursoras Eritroides/metabolismo , Hemoglobina Fetal/genética , Regulação da Expressão Gênica , Globinas/genética , Diferenciação Celular , Cromossomos Artificiais Bacterianos/genética , Antígenos Nucleares do Vírus Epstein-Barr/genética , Células Precursoras Eritroides/citologia , Vetores Genéticos , Proteínas de Fluorescência Verde , Hemina/farmacologia , Humanos , Células K562 , Proteínas Luminescentes/genética , Microscopia de Fluorescência , Sensibilidade e Especificidade , Transfecção
20.
Genomics ; 79(4): 479-82, 2002 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-11944977

RESUMO

The human TATA binding protein (TBP) locus consists of a functional domain of three closely linkedhousekeeping genes (TBP, PSMB1 (proteasomal C5 subunit), and PDCD2 (programmed cell death-2)) within a 50-kb interval at chromosome position 6q27. Here we demonstrate that a genomic clone spanning the 20-kb TBP gene, with 12 kb 5' and 3' flanking sequences, was fully functional in stable, transfected L-cells harboring a single copy of this transgene, including after long-term (60 day) culture in the absence of drug selective pressure. Furthermore, we were only able to detect DNaseI hypersensitive sites at the TBP and PSMB1 promoters present within this 44-kb fragment. Our data suggest that this 44-kb genomic region possesses genetic regulatory elements that not only drive ubiquitous expression of TBP but also negate chromatin and DNA methylation induced silencing, which is normally associated with transgenes stably integrated into tissue culture cells.


Assuntos
Proteínas de Ligação a DNA/genética , Genoma Humano , Fatores de Transcrição/genética , Transcrição Gênica , Cromossomos Humanos Par 6/genética , Regulação da Expressão Gênica , Inativação Gênica , Humanos , Regiões Promotoras Genéticas , Análise de Sequência de DNA , Proteína de Ligação a TATA-Box , Transgenes
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