Features of Vibrational and Electronic Structures of Decavanadate Revealed by Resonance Raman Spectroscopy and Density Functional Theory.

Polyoxometalates are known to be inhibitors of a diverse collection of enzymes, although the specific interactions that lead to this bioactivity are still unclear. Spectroscopic characterization may be an invaluable if indirect tool for remedying this problem, yet this requires clear, cogent assignment of polyoxometalate spectra before the complicating effect of their binding to large biomolecules can be considered. We report the use of FT-IR and resonance Raman spectroscopies alongside density functional theory to describe the vibrational and electronic structures of decavanadate, [V10O28]6-. Our computational model, which reproduced the majority of vibrational features to within 10 cm-1, was used to identify an axial oxo ligand as the most likely position of the acidic proton in the related cluster [HV10O28]5-. As resonance Raman spectroscopy can directly interrogate chromophores embedded in complex systems, this approach may be of general use in answering structural questions about polyoxometalate-enzyme systems.

Spectroscopic and computational studies of cobalamin species with variable lower axial ligation: implications for the mechanism of Co-C bond activation by class I cobalamin-dependent isomerases.

5'-deoxyadenosylcobalamin (coenzyme B12, AdoCbl) serves as the cofactor for several enzymes that play important roles in fermentation and catabolism. All of these enzymes initiate catalysis by promoting homolytic cleavage of the cofactor's Co-C bond in response to substrate binding to their active sites. Despite considerable research efforts, the role of the lower axial ligand in facilitating Co-C bond homolysis remains incompletely understood. In the present study, we characterized several derivatives of AdoCbl and its one-electron reduced form, Co(II)Cbl, by using electronic absorption and magnetic circular dichroism spectroscopies. To complement our experimental data, we performed computations on these species, as well as additional Co(II)Cbl analogues. The geometries of all species investigated were optimized using a quantum mechanics/molecular mechanics method, and the optimized geometries were used to compute absorption spectra with time-dependent density functional theory. Collectively, our results indicate that a reduction in the basicity of the lower axial ligand causes changes to the cofactor's electronic structure in the Co(II) state that replicate the effects seen upon binding of Co(II)Cbl to Class I isomerases, which replace the lower axial dimethylbenzimidazole ligand of AdoCbl with a protein-derived histidine (His) residue. Such a reduction of the basicity of the His ligand in the enzyme active site may be achieved through proton uptake by the catalytic triad of conserved residues, DXHXGXK, during Co-C bond homolysis.

Stimulated emission pumping spectroscopy of the [X](1)A' state of CHF.

We have recorded stimulated emission pumping (SEP) spectra of the A1A' ' 1A' system of CHF, which reveal rich detail concerning the rovibronic structure of the 1A' state up to approximately 7000 cm-1 above the vibrationless level. Using several intermediate A1A' ' state levels, we obtained rotationally resolved spectra for 16 of the 33 levels observed in our previous single vibronic level (SVL) emission study (Fan et al., J. Chem. Phys. 2005, 123, 014314), in addition to one new level. An anharmonic effective Hamiltonian model poorly reproduces the term energies even with the improved set of data because of the extensive interactions among levels in a given polyad (p) having combinations of nu1, nu2, nu3, which satisfy the relationship p = 2nu1 + nu2 + nu3. However, the precise A rotational constants determined from the SEP data were invaluable in clarifying the assignments for these strongly perturbed levels, and the data are well reproduced using a multiresonance effective Hamiltonian model. The derived vibrational parameters are in good agreement with high level ab initio calculations. The experimental frequencies were combined with those of CDF to derive a harmonic force field and average (rz,r(z)e) structures for the ground state.