Sustainability of cover cropping practice with changing climate in Illinois.

Climate change could adversely impact the best management practices (BMPs) designed to build a sustainable agro-ecological environment. Cover cropping is a conservation practice capable of reducing nitrate-nitrogen (NO3-N) loadings by consuming water and nitrate from the soil. The objective of this study was to investigate how climate change would impact the proven water quality benefits of cereal rye as a winter cover crop (CC) over the climate divisions of Illinois using the DSSAT model. Moreover, this study explores the sustainability of the CC with the changing climate conditions by using five regional climate models (RCMs) projections of two warming scenarios-rcp45 (a medium emission scenario - radiative forcing of 4.5 W/m2) and rcp85 (a high emission scenario - radiative forcing of 8.5 W/m2)). The CC impact simulated in the warming scenarios for the near-term (2021-2040) and the far-term future (2041-2060) were compared with the baseline scenario (2001-2020). Our results conclude that the climate change may negatively impact [average of CC and no CC (NCC)] maize yield (-6.6%) while positively affecting soybean yield (17.6%) and CC biomass (73.0%) by the mid-century. Increased mineralization caused by rising temperature could increase the nitrate loss via tile flow (NLoss) and nitrate leached (NLeached) up to 26.3% and 7.6% on average by the mid-century in Illinois. Increasing CC biomass could reduce the NLoss more considerably in all the scenarios compared to the baselines. Nevertheless, the NLoss level in the CC treatment can increase from the near-term to far-term future and could get closer to the baseline levels in the NCC treatment. These results suggest that CC alone may not address nitrate loss goals via subsurface drainage (caused by increasing N mineralization) in future. Therefore, more robust and cost-effective BMPs are needed to aid the CC benefits in preventing nutrient loss from the agricultural fields.

Evaluation of long-term impact of cereal rye as a winter cover crop in Illinois.

Extensive tile drainage usage combined with excess nitrogen fertilization has triggered nutrient loss and water quality issues in Illinois, which over time endorsed the hypoxia formation in the Gulf of Mexico. Past research reported that the use of cereal rye as a winter cover crop (CC) could be beneficial in reducing nutrient loss and improving water quality. The extensive use of CC may aid in reducing the hypoxic zone in the Gulf of Mexico. The objective of this study is to analyze the long-term impact of cereal rye on soil water­nitrogen (N) dynamics and cash crops growth in the maize-soybean agroecosystem in the state of Illinois. A gridded simulation approach was developed using the DSSAT model for the CC impact analysis. The CC impacts were estimated for the last two decades (2001-2020) for two fertilization scheduling (FA-SD = Fall and side-dress N and SP-SD = Spring pre-plant and side-dress N) comparing between CC scenario (FA-SD-C/SP-SD-C) with no CC (NCC) scenario (FA-SD-N/SP-SD-N). Our results suggest that the nitrate-N loss (via tile flow) and leaching reduced by 30.6 % and 29.4 %, assuming extensive adaptation of cover crop. The tile flow and deep percolation decreased by 20.8 % and 5.3 %, respectively, due to cereal rye inclusion. The model performance was relatively poor in simulating the CC impact on soil water dynamics in the hilly topography of southern Illinois. Generalizing changes in the soil properties (due to cereal rye inclusion) from the field scale to whole state (regardless of soil type) could be one of the possible limitations in this research. Overall, these findings substantiated the long-term benefits of cereal rye as a winter cover crop and found the spring N fertilizer application reduced nitrate-N loss compared to fall N application. These results could be helpful in promoting the practice in the Upper Mississippi River basin.

Plasmonic biosensors for bacterial endotoxin detection on biomimetic C-18 supported fiber optic probes.

Bacterial endotoxins such as lipopolysaccharides (LPS) are major contaminants of most pharmaceutical and consumer products. We report an antibiotic-mediated plasmonic biosensor for LPS detection based on a facile U-bent fiber optic probe (UFOP) technology. Biomimetic self-assembled layer of octadecyltrichlorosilanes (OTS) were functionalized on the surface of optical fiber probes to hydrophobically entrap LPS from aqueous solutions. The binding of LPS molecules was monitored in real-time by measuring the change in refractive index (RI) in the evanescent layer. To add specificity and signal amplification, the bound LPS molecules were further tagged with antimicrobial polymyxin-B conjugated gold nanoparticles (PMB-AuNPs) in a sandwich format. The assay was extensively optimized by investigating the role of experimental parameters like OTS concentration, incubation time and addition of a silver reduction step at the end of the assay. The lower limit of detection (LOD) for LPS was found to be 0.4 ng/mL with a 36-fold improved sensitivity upon silver enhancement. The total assay time was 1 h. The assay was also found to be highly specific in the presence of common biopharmaceutical components and could thus serve as an efficient endotoxin detection platform for quality control testing during therapeutic development.

Unraveling the effects of arbuscular mycorrhizal fungus on uptake, translocation, and distribution of cadmium in Phragmites australis (Cav.) Trin. ex Steud.

Phragmites australis (Cav.) Trin. ex Steud. has been reported to form a symbiosis with arbuscular mycorrhizal fungus (AMF). However, the tolerance mechanism for AMF symbiosis on cadmium (Cd) phytotoxicity still remains unclear. In this study, we investigated the effects of Rhizophagus irregularis inoculation on Cd-stressed (0, 1, and 20mgL-1) roots, stems, and leaves of P. australis with regard to subcellular Cd distribution and chemical forms of Cd. In addition, transmission electron microscopy and Fourier transform infrared spectroscopy were used to investigate variations in subcellular structures and functional groups in plant organs. The results showed that AMF inoculation could induce selective Cd distribution at subcellular levels, depending on different Cd treatments. The investigation of the chemical forms illustrated that AMF inoculation could alleviate Cd toxicity in all organs. Increases were observed in the ratios of undissolved Cd (FHAc) and oxalate Cd (FHCl), while decreases were observed in pectates and protein-integrated Cd (FNaCl) as well as water soluble Cd (FW). Hydroxyl (-OH), amide (-NH), carboxyl (C=O), and phosphate (P=O) groups as well as C-O and C-N stretching played predominant roles for the enhancement of Cd tolerance in response to AMF inoculation. These results provide instructive evidence for the mechanisms by which AMF inoculation enhances the Cd tolerance of P. australis via Cd uptake and distribution.

Modeling effect of cover condition and soil type on rotavirus transport in surface flow.

Runoff from animal production facilities contains various microbial pathogens which pose a health hazard to both humans and animals. Rotavirus is a frequently detected pathogen in agricultural runoff and the leading cause of death among children around the world. Diarrheal infection caused by rotavirus causes more than two million hospitalizations and death of more than 500,000 children every year. Very little information is available on the environmental factors governing rotavirus transport in surface runoff. The objective of this study is to model rotavirus transport in overland flow and to compare the model results with experimental observations. A physically based model, which incorporates the transport of infective rotavirus particles in both liquid (suspension or free-floating) and solid phase (adsorbed to soil particles), has been used in this study. Comparison of the model results with experimental results showed that the model could reproduce the recovery kinetics satisfactorily but under-predicted the virus recovery in a few cases when multiple peaks were observed during experiments. Similarly, the calibrated model had a good agreement between observed and modeled total virus recovery. The model may prove to be a promising tool for developing effective management practices for controlling microbial pathogens in surface runoff.

Endotoxin Entrapment on Glass via C-18 Self-Assembled Monolayers and Rapid Detection Using Drug-Nanoparticle Bioconjugate Probes.

Bloodstream bacterial infections are known to illicit a systemic immune response that can lead to multiorgan failure and septic shock. The current endotoxin identification techniques in serum are expensive and elaborate requiring bulky benchtop instrumentation. We demonstrate a new route for endotoxin detection in which lipopolysaccharides (LPS) in solution are entrapped using C-18 silane-functionalized glass slides and tagged with polymyxin B sulfate (PMB) drug-conjugated gold nanoparticles. The signal from the particles is further amplified via the silver reduction approach to yield concentration-dependent colorimetric spots visible to the bare eye. The method is rapid, reliable, and cost-effective and fulfills an urgent unmet need in the healthcare industry for early septicemia diagnosis.

Reducing Postharvest Losses during Storage of Grain Crops to Strengthen Food Security in Developing Countries.

While fulfilling the food demand of an increasing population remains a major global concern, more than one-third of food is lost or wasted in postharvest operations. Reducing the postharvest losses, especially in developing countries, could be a sustainable solution to increase food availability, reduce pressure on natural resources, eliminate hunger and improve farmers' livelihoods. Cereal grains are the basis of staple food in most of the developing nations, and account for the maximum postharvest losses on a calorific basis among all agricultural commodities. As much as 50%-60% cereal grains can be lost during the storage stage due only to the lack of technical inefficiency. Use of scientific storage methods can reduce these losses to as low as 1%-2%. This paper provides a comprehensive literature review of the grain postharvest losses in developing countries, the status and causes of storage losses and discusses the technological interventions to reduce these losses. The basics of hermetic storage, various technology options, and their effectiveness on several crops in different localities are discussed in detail.

In vitro flow-through assay for rapid detection of endotoxin in human sera: A proof-of-concept.

An increase in endotoxin concentration in the bloodstream can trigger activation of innate immune response leading to septic shock. There is currently no method available for rapid endotoxin detection at a patient's bedside. We demonstrate a simple, portable and cost-effective strategy to measure endotoxin levels in human serum within 5min using a flow-through assay. A drop of serum containing LPS was spotted on an endotoxin-affinity membrane placed over high-wicking absorbent pads. Subsequent addition of polymyxin B sulfate drug-conjugated gold nanoparticles allowed concentration-dependent visualization of spots by the naked eye in the clinically-relevant range of 10pg/mL to 10ng/mL. The results were quantified using a concentration-calibrated color chart and the assay performance was tested with archival plasma samples of 18 known septicemia patients. The results showed a reasonably good correlation with the patients' hematological data. This proof-of-concept study puts forth an interesting alternative for early septicemia diagnosis in future.

Soil, water, and nutrient losses from management alternatives for degraded pasture in Brazilian Atlantic Rainforest biome.

The objective of this study was to evaluate sediment, water and nutrient losses from different pasture managements in the Atlantic Rainforest biome. A field study was carried out in Alegre Espiríto Santo, Brazil, on a Xanthic Ferralsol cultivated with braquiaria (Brachiaria brizantha). The six pasture managements studied were: control (CON), chisel (CHI), fertilizer (FER), burned (BUR), plowing and harrowing (PH), and integrated crop-livestock (iCL). Runoff and sediment samples were collected and analyzed for calcium (Ca), magnesium (Mg), potassium (K), phosphorus (P) and organic carbon contents. Soil physical attributes and above and below biomass were also evaluated. The results indicated that higher water loss was observed for iCL (129.90mm) and CON (123.25mm) managements, and the sediment losses were higher for CON (10.24tha-1) and BUR (5.20tha-1) managements when compared to the other managements. Majority of the nutrients losses occurred in dissolved fraction (99% of Ca, 99% of Mg, 96% of K, and 65% of P), whereas a significant fraction of organic carbon (80%) loss occurred in a particulate form. Except for P, other nutrients (Ca, Mg and K) and organic carbon losses were higher in coarse sediment compared to fine sediment. The greater losses of sediment, organic carbon, and nutrients were observed for CON followed by BUR management (p<0.05). Our findings indicated that the traditional pasture management adopted in the Atlantic Rainforest needs to be rethought and burned management should be avoided. Based on the water, soil, and nutrient losses from various practices, to reduce pasture degradation, farmers should adopt edaphic practices by applying lime and fertilize to improve pasture growth and soil cover, and reducing soil erosion in the hilly Brazilian Atlantic Rainforest biome.

An investigation of folic acid-protein association sites and the effect of this association on folic acid self-assembly.

The contribution of folic acid (FA)-tryptophan interactions to FA-protein association was investigated in the context of using FA as a drug carrier in protein delivery systems. Bovine serum albumin (BSA) and indolicidin were used as model proteins in the study. The FA-BSA complex was characterized by using the Bradford reagent to identify the impact of FA-BSA association on BSA-dye reagent interactions. UV-visible spectroscopic analysis of the FA-BSA mixture showed that the absorbance maximum of BSA-dye reagent occurred at 595 nm, even after the association of FA with BSA. This confirms that protonated amino acid groups of the protein are not involved in FA-BSA association. Moreover, molecular dynamics (MD) simulation confirmed the presence of an associative interaction between aromatic moieties in FA and tryptophan moieties in the indolicidin molecule, which disrupted FA self-assembly. An X-ray diffraction (XRD) study showed that there was limited disruption of FA self-assembly after the addition of BSA or tryptophan. This suggests that FA and BSA are compatible and associate with each other. Graphical Abstract Mechanism of folic acid and protein association.

Nanoparticle-Drug Bioconjugate as Dual Functional Affinity Ligand for Rapid Point-of-Care Detection of Endotoxin in Water and Serum.

Endotoxin or lipopolysaccharide (LPS) is a major constituent of the Gram-negative bacterial cell wall that causes a life-threatening disorder called septicemia resulting from the unregulated activation of the innate immune system. We demonstrate a simple and robust drug-assisted dot blot bioassay for endotoxin detection that can be used right by the critically ill patients' bedside. Target LPS molecules are trapped from serum or water on glass substrates via long-chain alkyls and tagged with reporter gold nanoparticles (NPs) preconjugated to an antibiotic drug called polymyxin B sulfate (PMB). A post-silver-enhancement step enables signal visibility to the bare eye over a wide and clinically relevant concentration range of 50 fg/mL-50 ng/mL, allowing effortless diagnosis of sepsis at various stages, from early sepsis to septic shock.

Fate of Cryptosporidium parvum oocysts within soil, water, and plant environment.

Vegetative Filter Strips (VFS) have long been used to control the movement of agricultural nutrients and prevent them from reaching receiving waters. Earlier studies have shown that VFS also dramatically reduce both the kinetics and extent of Cryptosporidium parvum (C. parvum) oocysts overland transport. In this study, we investigated possible mechanisms responsible for the ability of VFS to reduce oocyst overland transport. Measurement of the kinetics of C. parvum adhesion to individual sand, silt, and clay soil particles revealed that oocysts associate over time, albeit relatively slow, with clay but not silt or sand particles. Measurement of oocyst overland transport kinetics, soil infiltration depth, distance of travel, and adhesion to vegetation on bare and vegetated soil surfaces indicate that oocysts move more slowly, and penetrate the soil profile to a greater extent on a vegetated surface than on a bare soil surface. Furthermore, we demonstrate a small fraction of the oocysts become attached to vegetation at the soil-vegetation interface on VFS. These results suggest VFS function to reduce oocyst overland transport by primarily decreasing oocyst surface flow enough to allow penetration within the soil profile followed by subsequent adhesion to or entrapment within clay particle aggregates, and to a lesser extent, adhesion to the surface vegetation.

Evaluation of compost blankets for erosion control from disturbed lands.

Soil erosion due to water and wind results in the loss of valuable top soil and causes land degradation and environmental quality problems. Site specific best management practices (BMP) are needed to curb erosion and sediment control and in turn, increase productivity of lands and sustain environmental quality. The aim of this study was to investigate the effectiveness of three different types of biodegradable erosion control blankets- fine compost, mulch, and 50-50 mixture of compost and mulch, for soil erosion control under field and laboratory-scale experiments. Quantitative analysis was conducted by comparing the sediment load in the runoff collected from sloped and tilled plots in the field and in the laboratory with the erosion control blankets. The field plots had an average slope of 3.5% and experiments were conducted under natural rainfall conditions, while the laboratory experiments were conducted at 4, 8 and 16% slopes under simulated rainfall conditions. Results obtained from the field experiments indicated that the 50-50 mixture of compost and mulch provides the best erosion control measures as compared to using either the compost or the mulch blanket alone. Laboratory results under simulated rains indicated that both mulch cover and the 50-50 mixture of mulch and compost cover provided better erosion control measures compared to using the compost alone. Although these results indicate that the 50-50 mixtures and the mulch in laboratory experiments are the best measures among the three erosion control blankets, all three types of blankets provide very effective erosion control measures from bare-soil surface. Results of this study can be used in controlling erosion and sediment from disturbed lands with compost mulch application. Testing different mixture ratios and types of mulch and composts, and their efficiencies in retaining various soil nutrients may provide more quantitative data for developing erosion control plans.

Nutrient transport through a Vegetative Filter Strip with subsurface drainage.

The transport of nutrients and soil sediments in runoff has been recognized as a noteworthy environmental issue. Vegetative Filter Strips (VFS) have been used as one of the best management practices (BMPs) for retaining nutrients and sediments from surface runoff, thus preventing the pollutants from reaching receiving waters. However, the effectiveness of a VFS when combined with a subsurface drainage system has not been investigated previously. This study was undertaken to monitor the retention and transport of nutrients within a VFS that had a subsurface drainage system installed at a depth of 1.2 m below the soil surface. Nutrient concentrations of NO(3)-N (Nitrate Nitrogen), PO(-)(4) (Orthophosphorus), and TP (Total Phosphorus) were measured in surface water samples (entering and leaving the VFS), and subsurface outflow. Soil samples were collected and analyzed for plant available Phosphorus (Bray P1) and NO(3)-N concentrations. Results showed that PO(-)(4), NO(3)-N, and TP concentrations decreased in surface flow through the VFS. Many surface outflow water samples from the VFS showed concentration reductions of as much as 75% for PO(-)(4) and 70% for TP. For subsurface outflow water samples through the drainage system, concentrations of PO(-)(4) and TP decreased but NO(3)-N concentrations increased in comparison to concentrations in surface inflow samples. Soil samples that were collected from various depths in the VFS showed a minimal buildup of nutrients in the top soil profile but indicated a gradual buildup of nutrients at the depth of the subsurface drain. Results demonstrate that although a VFS can be very effective in reducing runoff and nutrients from surface flow, the presence of a subsurface drain underneath the VFS may not be environmentally beneficial. Such a combination may increase NO(3)-N transport from the VFS, thus invalidating the purpose of the BMP.

Overland and near-surface transport of Cryptosporidium parvum from vegetated and nonvegetated surfaces.

Understanding microbial pathogen transport patterns in overland flow is important for developing best management practices for limiting microbial transport to water resources. Knowledge about the effectiveness of vegetative filter strips (VFS) to reduce pathogen transport from livestock confinement areas is limited. In this study, overland and near-surface transport of Cryptosporidium parvum has been investigated. Effects of land slopes, vegetation, and rainfall intensities on oocyst transport were examined using a tilting soil chamber with two compartments, one with bare ground and the other with brome (Bromus inermis Leyss.) vegetation. Three slope conditions (1.5, 3.0, and 4.5%) were used in conjunction with two rainfall intensities (25.4 and 63.5 mm/h) for 44 min using a rainfall simulator. The vegetative surface was very effective in reducing C. parvum in surface runoff. For the 25.4 mm/h rainfall, the total percent recovery of oocysts in overland flow from the VFS varied from 0.6 to 1.7%, while those from the bare ground condition varied from 4.4 to 14.5%. For the 63.5 mm/h rainfall, the recovery percentages of oocysts varied from 0.8 to 27.2% from the VFS, and 5.3 to 59% from bare-ground conditions. For all slopes and rainfall intensities, the total (combining both surface and near-surface) recovery of C. parvum oocysts was considerably less from the vegetated surface than those from the bare-ground conditions. These results indicate that the VFS can be a best management practice for controlling C. parvum in runoff from animal production facilities.