Microscopy Image Dataset for Deep Learning-Based Quantitative Assessment of Pulmonary Vascular Changes.

Pulmonary hypertension (PH) is a syndrome complex that accompanies a number of diseases of different etiologies, associated with basic mechanisms of structural and functional changes of the pulmonary circulation vessels and revealed pressure increasing in the pulmonary artery. The structural changes in the pulmonary circulation vessels are the main limiting factor determining the prognosis of patients with PH. Thickening and irreversible deposition of collagen in the pulmonary artery branches walls leads to rapid disease progression and a therapy effectiveness decreasing. In this regard, histological examination of the pulmonary circulation vessels is critical both in preclinical studies and clinical practice. However, measurements of quantitative parameters such as the average vessel outer diameter, the vessel walls area, and the hypertrophy index claimed significant time investment and the requirement for specialist training to analyze micrographs. A dataset of pulmonary circulation vessels for pathology assessment using semantic segmentation techniques based on deep-learning is presented in this work. 609 original microphotographs of vessels, numerical data from experts' measurements, and microphotographs with outlines of these measurements for each of the vessels are presented. Furthermore, here we cite an example of a deep learning pipeline using the U-Net semantic segmentation model to extract vascular regions. The presented database will be useful for the development of new software solutions for the analysis of histological micrograph.

An intelligent agriculture management system for rainfall prediction and fruit health monitoring.

Contrary to popular belief, agriculture is becoming more data-driven with artificial intelligence and Internet-of-Things (IoT) playing crucial roles. In this paper, the integrated processing executed by various sensors combined as an IoT pack and driving an intelligent agriculture management system designed for rainfall prediction and fruit health monitoring have been included. The proposed system based on an AI aided model makes use of a Convolutional Neural Network (CNN) with long short-term memory (LSTM) layer for rainfall prediction and a CNN with SoftMax layer along with a few deep learning pre-trained models for fruit health monitoring. Another model that works as a combined rainfall predictor and fruit health recognizer is designed using a CNN + LSTM and a multi-head self-attention mechanism which proves to be effective. The entire system is cloud resident and available for use through an application.

Reversal in the drought stress response of the Scots pine forest ecosystem: Local soil water regime as a key to improving climate change resilience.

In a changing climate, forest ecosystems have become increasingly vulnerable to continuously exacerbating heat and associated drought conditions. Climate stress resilience is governed by a complex interplay of global, regional, and local factors, with hydrological conditions being among the key players. We studied a Scots pine (Pinus sylvestris L.) forest ecosystem located near the southern edge of the boreal ecotone, which is particularly subjected to frequent and prolonged droughts. By comparing the dendrochronological series of pines growing in apparently contrasting hydrological conditions ranging from the waterlogged peat bog area to the dry soil at the surrounding elevations, we investigated how the soil water regime affects the climate response and drought stress resilience of the forest ecosystem. We found that in the dry land area, a significant fraction of the trees were replaced after two major climate extremes: prolonged drought and extremely low winter temperatures. The latter has also been followed by a three- to ten-fold growth reduction of the trees that survived in the next year, whereas no similar effect has been observed in the peat bog area. Multi-scale detrended partial cross-correlation analysis (DPCCA) indicated that tree-ring width (TRW) was negatively correlated with spring and summer temperatures and positively correlated with the Palmer drought severity index (PDSI) for the same year. For the elevated dry land area, the above effect extends to interannual scales, indicating that prolonged heatwaves and associated droughts are among the factors that limit tree growth. In marked contrast, in the waterlogged peat bog area, a reversed tendency was observed, with prolonged dry periods as well as warmer springs and summers over several consecutive years, leading to increasing tree growth with a one- to three-year time lag. Altogether, our results indicate that the pessimal conditions of a warming climate could become favorable through the preservation of the soil water regime.

Development of a mobile-based intelligent module for identification and tracking of household appliances.

Every year manufacturers of household appliances improve their devices, trying to make everyday life easier for users. New smart devices have many useful features, but not all users can easily cope with the complexity of the devices. One of the main tasks of household appliance manufacturers is to ensure the convenience of using appliances, taking into account the increasing complexity. Therefore, any manufacturer supplies equipment with a short but useful instruction manual. Practice shows that no printed user manual can compare with a demonstration of the device operation by a professional consultant. Instructions for home appliances using augmented reality technology will allow users to get the necessary detailed information about the device in a short period of time. As part of this work, the task of developing an artificial intelligence-based module is being solved. This module consists of developed classification, matching, and tracking submodules that can provide simple and fast visual instructions to users of household appliances in real time. The identification of household appliances is performed with more than 0.9 accuracy, and the tracking inside an unidentified object using the camera of a mobile device is processed with the success score of about 0.68 and frames per second (FPS) about 7. Mobile applications based on the proposed intelligent modules for Android and iOS were developed.

The prognostic role of emotion regulation dynamics in the treatment of major depressive disorder.

OBJECTIVE: The potential prognostic role of emotion regulation in the treatment of major depressive disorder (MDD) has been highlighted by transtheoretical literature and supported by promising empirical findings. The majority of the literature is based on self-report observations at a single snapshot, thus little is known about the prognostic value of moment-to-moment dynamic evolvement of emotion. The present study is the first to examine the prognostic value of both intra- and interpersonal, moment-to-moment emotion regulation dynamics, and the potential moderating effect of the type of treatment. METHOD: To assess the prognostic value of emotion regulation dynamics, we focused on the first session, using 6,780 talk-turns within 52 patient-therapist dyads. Emotion regulation dynamics were measured using fundamental frequencies of the voice and were calculated using empirical Bayes residuals of the actor-partner interdependence model. Symptomatic change was measured using the Hamilton Rating Scale for Depression across 16 weeks of supportive treatment (ST) or supportive-expressive treatment (SET). RESULTS: Findings suggest that patients who show less regulated intrapersonal dynamics during the first session show less reduction of symptoms throughout treatment (ß = .26, p = .019). Findings further suggest that this association is mitigated when these patients receive SET, as opposed to ST (ß = .72, p = .020). CONCLUSIONS: The findings demonstrate the ability of first-session emotion regulation dynamics to serve as a prognostic variable. The findings further suggest that the adverse effect of emotion regulation dynamics on the patient's prognosis can be mitigated by explicit work on changing maladaptive emotional patterns. (PsycInfo Database Record (c) 2023 APA, all rights reserved).

Monkeypox detection from skin lesion images using an amalgamation of CNN models aided with Beta function-based normalization scheme.

We have recently been witnessing that our society is starting to heal from the impacts of COVID-19. The economic, social and cultural impacts of a pandemic cannot be ignored and we should be properly equipped to deal with similar situations in future. Recently, Monkeypox has been concerning the international health community with its lethal impacts for a probable pandemic. In such situations, having appropriate protocols and methodologies to deal with the outbreak efficiently is of paramount interest to the world. Early diagnosis and treatment stand as the only viable option to tackle such problems. To this end, in this paper, we propose an ensemble learning-based framework to detect the presence of the Monkeypox virus from skin lesion images. We first consider three pre-trained base learners, namely Inception V3, Xception and DenseNet169 to fine-tune on a target Monkeypox dataset. Further, we extract probabilities from these deep models to feed into the ensemble framework. To combine the outcomes, we propose a Beta function-based normalization scheme of probabilities to learn an efficient aggregation of complementary information obtained from the base learners followed by the sum rule-based ensemble. The framework is extensively evaluated on a publicly available Monkeypox skin lesion dataset using a five-fold cross-validation setup to evaluate its effectiveness. The model achieves an average of 93.39%, 88.91%, 96.78% and 92.35% accuracy, precision, recall and F1 scores, respectively. The supporting source codes are presented in https://github.com/BihanBanerjee/MonkeyPox.

Brightfield vs Fluorescent Staining Dataset-A Test Bed Image Set for Machine Learning based Virtual Staining.

Differential fluorescent staining is an effective tool widely adopted for the visualization, segmentation and quantification of cells and cellular substructures as a part of standard microscopic imaging protocols. Incompatibility of staining agents with viable cells represents major and often inevitable limitations to its applicability in live experiments, requiring extraction of samples at different stages of experiment increasing laboratory costs. Accordingly, development of computerized image analysis methodology capable of segmentation and quantification of cells and cellular substructures from plain monochromatic images obtained by light microscopy without help of any physical markup techniques is of considerable interest. The enclosed set contains human colon adenocarcinoma Caco-2 cells microscopic images obtained under various imaging conditions with different viable vs non-viable cells fractions. Each field of view is provided in a three-fold representation, including phase-contrast microscopy and two differential fluorescent microscopy images with specific markup of viable and non-viable cells, respectively, produced using two different staining schemes, representing a prominent test bed for the validation of image analysis methods.

Video-based marker-free tracking and multi-scale analysis of mouse locomotor activity and behavioral aspects in an open field arena: A perspective approach to the quantification of complex gait disturbances associated with Alzheimer's disease.

Introduction: Complex gait disturbances represent one of the prominent manifestations of various neurophysiological conditions, including widespread neurodegenerative disorders such as Alzheimer's and Parkinson's diseases. Therefore, instrumental measurement techniques and automatic computerized analysis appears essential for the differential diagnostics, as well as for the assessment of treatment effectiveness from experimental animal models to clinical settings. Methods: Here we present a marker-free instrumental approach to the analysis of gait disturbances in animal models. Our approach is based on the analysis of video recordings obtained with a camera placed underneath an open field arena with transparent floor using the DeeperCut algorithm capable of online tracking of individual animal body parts, such as the snout, the paws and the tail. The extracted trajectories of animal body parts are next analyzed using an original computerized methodology that relies upon a generalized scalable model based on fractional Brownian motion with parameters identified by detrended partial cross-correlation analysis. Results: We have shown that in a mouse model representative movement patterns are characterized by two asymptotic regimes characterized by integrated 1/f noise at small scales and nearly random displacements at large scales separated by a single crossover. More detailed analysis of gait disturbances revealed that the detrended cross-correlations between the movements of the snout, paws and tail relative to the animal body midpoint exhibit statistically significant discrepancies in the Alzheimer's disease mouse model compared to the control group at scales around the location of the crossover. Discussion: We expect that the proposed approach, due to its universality, robustness and clear physical interpretation, is a promising direction for the design of applied analysis tools for the diagnostics of various gait disturbances and behavioral aspects in animal models. We further believe that the suggested mathematical models could be relevant as a complementary tool in clinical diagnostics of various neurophysiological conditions associated with movement disorders.

Evaluation of shelter dog activity levels before and during COVID-19 using automated analysis.

Animal shelters have been found to represent stressful environments for pet dogs, both affecting behavior and influencing welfare. The current COVID-19 pandemic has brought to light new uncertainties in animal sheltering practices which may affect shelter dog behavior in unexpected ways. To evaluate this, we analyzed changes in dog activity levels before COVID-19 and during COVID-19 using an automated video analysis within a large, open-admission animal shelter in New York City, USA. Shelter dog activity was analyzed during two two-week long time periods: (i) just before COVID-19 safety measures were put in place (Feb 26-Mar 17, 2020) and (ii) during the COVID-19 quarantine (July 10-23, 2020). During these two periods, video clips of 15.3 second, on average, were taken of participating kennels every hour from approximately 8 am to 8 pm. Using a two-step filtering approach, a matched sample (based on the number of days of observation) of 34 dogs was defined, consisting of 17 dogs in each group (N1/N2 = 17). An automated video analysis of active/non-active behaviors was conducted and compared to manual coding of activity. The automated analysis validated by comparison to manual coding reaching above 79% accuracy. Significant differences in the patterns of shelter dog activity were observed: less activity was observed in the afternoons before COVID-19 restrictions, while during COVID-19, activity remained at a constant average. Together, these findings suggest that 1) COVID-19 lockdown altered shelter dog in-kennel activity, likely due to changes in the shelter environment and 2) automated analysis can be used as a hands-off tool to monitor activity. While this method of analysis presents immense opportunity for future research, we discuss the limitations of automated analysis and guidelines in the context of shelter dogs that can increase accuracy of detection, as well as reflect on policy changes that might be helpful in mediating canine stress in changing shelter environments.

An Ensemble of CNN Models for Parkinson's Disease Detection Using DaTscan Images.

Parkinson's Disease (PD) is a progressive central nervous system disorder that is caused due to the neural degeneration mainly in the substantia nigra in the brain. It is responsible for the decline of various motor functions due to the loss of dopamine-producing neurons. Tremors in hands is usually the initial symptom, followed by rigidity, bradykinesia, postural instability, and impaired balance. Proper diagnosis and preventive treatment can help patients improve their quality of life. We have proposed an ensemble of Deep Learning (DL) models to predict Parkinson's using DaTscan images. Initially, we have used four DL models, namely, VGG16, ResNet50, Inception-V3, and Xception, to classify Parkinson's disease. In the next stage, we have applied a Fuzzy Fusion logic-based ensemble approach to enhance the overall result of the classification model. The proposed model is assessed on a publicly available database provided by the Parkinson's Progression Markers Initiative (PPMI). The achieved recognition accuracy, Precision, Sensitivity, Specificity, F1-score from the proposed model are 98.45%, 98.84%, 98.84%, 97.67%, and 98.84%, respectively which are higher than the individual model. We have also developed a Graphical User Interface (GUI)-based software tool for public use that instantly detects all classes using Magnetic Resonance Imaging (MRI) with reasonable accuracy. The proposed method offers better performance compared to other state-of-the-art methods in detecting PD. The developed GUI-based software tool can play a significant role in detecting the disease in real-time.

Objective Video-Based Assessment of ADHD-Like Canine Behavior Using Machine Learning.

Canine ADHD-like behavior is a behavioral problem that often compromises dogs' well-being, as well as the quality of life of their owners; early diagnosis and clinical intervention are often critical for successful treatment, which usually involves medication and/or behavioral modification. Diagnosis mainly relies on owner reports and some assessment scales, which are subject to subjectivity. This study is the first to propose an objective method for automated assessment of ADHD-like behavior based on video taken in a consultation room. We trained a machine learning classifier to differentiate between dogs clinically treated in the context of ADHD-like behavior and health control group with 81% accuracy; we then used its output to score the degree of exhibited ADHD-like behavior. In a preliminary evaluation in clinical context, in 8 out of 11 patients receiving medical treatment to treat excessive ADHD-like behavior, H-score was reduced. We further discuss the potential applications of the provided artifacts in clinical settings, based on feedback on H-score received from a focus group of four behavior experts.

A deep learning model for classifying human facial expressions from infrared thermal images.

The analysis of human facial expressions from the thermal images captured by the Infrared Thermal Imaging (IRTI) cameras has recently gained importance compared to images captured by the standard cameras using light having a wavelength in the visible spectrum. It is because infrared cameras work well in low-light conditions and also infrared spectrum captures thermal distribution that is very useful for building systems like Robot interaction systems, quantifying the cognitive responses from facial expressions, disease control, etc. In this paper, a deep learning model called IRFacExNet (InfraRed Facial Expression Network) has been proposed for facial expression recognition (FER) from infrared images. It utilizes two building blocks namely Residual unit and Transformation unit which extract dominant features from the input images specific to the expressions. The extracted features help to detect the emotion of the subjects in consideration accurately. The Snapshot ensemble technique is adopted with a Cosine annealing learning rate scheduler to improve the overall performance. The performance of the proposed model has been evaluated on a publicly available dataset, namely IRDatabase developed by RWTH Aachen University. The facial expressions present in the dataset are Fear, Anger, Contempt, Disgust, Happy, Neutral, Sad, and Surprise. The proposed model produces 88.43% recognition accuracy, better than some state-of-the-art methods considered here for comparison. Our model provides a robust framework for the detection of accurate expression in the absence of visible light.

A fuzzy rank-based ensemble of CNN models for classification of cervical cytology.

Cervical cancer affects more than 0.5 million women annually causing more than 0.3 million deaths. Detection of cancer in its early stages is of prime importance for eradicating the disease from the patient's body. However, regular population-wise screening of cancer is limited by its expensive and labour intensive detection process, where clinicians need to classify individual cells from a stained slide consisting of more than 100,000 cervical cells, for malignancy detection. Thus, Computer-Aided Diagnosis (CAD) systems are used as a viable alternative for easy and fast detection of cancer. In this paper, we develop such a method where we form an ensemble-based classification model using three Convolutional Neural Network (CNN) architectures, namely Inception v3, Xception and DenseNet-169 pre-trained on ImageNet dataset for Pap stained single cell and whole-slide image classification. The proposed ensemble scheme uses a fuzzy rank-based fusion of classifiers by considering two non-linear functions on the decision scores generated by said base learners. Unlike the simple fusion schemes that exist in the literature, the proposed ensemble technique makes the final predictions on the test samples by taking into consideration the confidence in the predictions of the base classifiers. The proposed model has been evaluated on two publicly available benchmark datasets, namely, the SIPaKMeD Pap Smear dataset and the Mendeley Liquid Based Cytology (LBC) dataset, using a 5-fold cross-validation scheme. On the SIPaKMeD Pap Smear dataset, the proposed framework achieves a classification accuracy of 98.55% and sensitivity of 98.52% in its 2-class setting, and 95.43% accuracy and 98.52% sensitivity in its 5-class setting. On the Mendeley LBC dataset, the accuracy achieved is 99.23% and sensitivity of 99.23%. The results obtained outperform many of the state-of-the-art models, thereby justifying the effectiveness of the same. The relevant codes of this proposed model are publicly available on GitHub .