Solvent vapour-responsive structural transformations in molecular crystals composed of a luminescent mononuclear aluminium(III) complex.

Investigations into the construction of functional molecular crystals and their external stimuli-induced structural transformations represent compelling research topics, particularly for the advancement of sensors and memory devices. However, reports on the development of molecular crystals constructed from discrete mononuclear complex units and exhibiting structural transformations via the adsorption/desorption of guest molecules are scarce. In this study, we synthesised three molecular crystals composed of [Al(sap)(acac)(H2O)]·(solvent) (H2sap = 2-salicylideneaminophenol, acac = acetylacetonate, solvent = Me2CO (Al·Me2CO), MeCN (Al·MeCN), or DMSO (Al·DMSO)), and demonstrated solvent vapour-responsive reversible crystal-to-crystal structural transformations in Al·Me2CO and Al·MeCN. For Al·DMSO, exposure to DMSO vapour led to the formation of DMSO-coordinated compound [Al(sap)(acac)(DMSO)], indicating an irreversible structural transformation. This solvent vapour-responsive system incorporates a luminescent mononuclear aluminium(III) complex (λmax = 539-552 nm, Φem = 0.07-0.27) as the molecular building unit for the porous-like framework. Therefore, we synthesised a new functional molecular material and a potential molecular building unit that facilitates guest fixation through hydrogen-bonding.

GINGER: an integrated method for high-accuracy prediction of gene structure in higher eukaryotes at the gene and exon level.

The prediction of gene structure within the genome sequence is the starting point of genome analysis, and its accuracy has a significant impact on the quality of subsequent analyses. Gene structure prediction is roughly divided into RNA-Seq-based methods, ab initio-based methods, homology-based methods, and the integration of individual prediction methods. Integrated methods are mainstream in recent genome projects because they improve prediction accuracy by combining or taking the best individual prediction findings; however, adequate prediction accuracy for eukaryotic species has not yet been achieved. Therefore, we developed an integrated tool, GINGER, that solves various issues related to gene structure prediction in higher eukaryotes. By handling artefacts in alignments of RNA and protein sequences, reconstructing gene structures via dynamic programming with appropriately weighted and scored exon/intron/intergenic regions, and applying different prediction processes and filtering criteria to multi-exon and single-exon genes, we achieved a significant improvement in accuracy compared to the existing integration methods. The feature of GINGER is its high prediction accuracy at the gene and exon levels, which is pronounced for species with more complex gene architectures. GINGER is implemented using Nextflow, which allows for the efficient and effective use of computing resources.

Polarity and Dielectric Property Control Triggered by a Coordinated Solvent Molecule Exchange in Luminescent Mononuclear Aluminium(III) Complexes.

The development of molecule-based multifunctional switchable materials that exhibit a switch of polarity and dielectric property are extremely limited. We have demonstrated solvent-vapour-induced reversible molecular rearrangements between nonpolar crystals [Al(sap)(acac)(sol)] (H2 sap=2-salicylideneaminophenol, acac=acetylacetonate, sol=MeOH (1), EtOH (2)) and polar crystal [Al(sap)(acac)(DMSO)] (3). This crystal-to-crystal structural transformation was accompanied by a switch of second harmonic generation (SHG) and dielectric properties, including the formation of ferroelectric domains, thus reflecting the SHG-active polar Cc space group of 3. This is the first reported example of dielectric properties and polarity switching in luminescent mononuclear aluminium(III) complexes, which exhibit strong green emission in the solid state.

Mechanism of high photoluminescence quantum yield of melem.

To produce high-efficiency organic light-emitting diodes, materials that exhibit thermally activated delayed fluorescence (TADF) are attracting attention as alternatives to phosphorescent materials containing heavy metallic elements. Melem, a small molecule with a heptazine backbone composed only of nitrogen, carbon, and hydrogen, is known to emit light in the near-ultraviolet region and exhibit high photoluminescence (PL) quantum yield and delayed fluorescence. However, the mechanism underlying the high PL quantum yield remains unclear. This study aimed to elucidate the mechanism of the high PL quantum yield of melem by examining its optical properties in detail. When the amount of dissolved oxygen in the melem solution was increased by bubbling oxygen through it, the PL quantum yield and emission lifetime decreased significantly, indicating that the triplet state was involved in the light-emission mechanism. Furthermore, the temperature dependence of the PL intensity of melem was investigated; the PL intensity decreased with decreasing temperature, indicating that it increases thermally. The experimental results show that melem is a TADF material that produces an extremely high PL quantum yield by upconversion from the triplet to the singlet excited state.

Proton Conduction at High Temperature in High-Symmetry Hydrogen-Bonded Molecular Crystals of RuIII Complexes with Six Imidazole-Imidazolate Ligands.

Invited for the cover of this issue is mainly the group of Makoto Tadokoro and co-workers at Tokyo University of Science. Other co-workers are Masaki Itoh, Ryota Nishimura, Kensuke Sekiguchi (TUS students), Dr. Norihisa Hoshino (Tohoku Univ.), Dr. Hajime Kamebuchi (Nihon Univ.), Dr. Jun Miyazaki (Tokyo Denki Univ.), Prof. Motohiro Mizuno (Kanazawa Univ.) and Prof. Tomoyuki Akutagawa (Tohoku Univ.). The image depicts on two mechanisms of proton transport rotations of the proton-conductive starburst molecule [RuIII (HIm)3 (Im)3 ]. Read the full text of the article at 10.1002/chem.202201397.

Proton Conduction at High Temperature in High-Symmetry Hydrogen-Bonded Molecular Crystals of RuIII Complexes with Six Imidazole-Imidazolate Ligands.

A new H-bonded crystal [RuIII (Him)3 (Im)3 ] with three imidazole (Him) and three imidazolate (Im- ) groups was prepared to obtain a higher-temperature proton conductor than a Nafion membrane with water driving. The crystal is constructed by complementary N-H⋅⋅⋅N H-bonds between the RuIII complexes and has a rare Icy-c* cubic network topology with a twofold interpenetration without crystal anisotropy. The crystals show a proton conductivity of 3.08×10-5  S cm-1 at 450 K and a faster conductivity than those formed by only HIms. The high proton conductivity is attributed to not only molecular rotations and hopping motions of HIm frameworks that are activated at ∼113 K, but also isotropic whole-molecule rotation of [RuIII (Him)3 (Im)3 ] at temperatures greater than 420 K. The latter rotation was confirmed by solid-state 2 H NMR spectroscopy; probable proton conduction routes were predicted and theoretically considered.

Elucidation of the speciation history of three sister species of crown-of-thorns starfish (Acanthaster spp.) based on genomic analysis.

The crown-of-thorns starfish (COTS) is a coral predator that is widely distributed in Indo-Pacific Oceans. A previous phylogenetic study using partial mitochondrial sequences suggested that COTS had diverged into four distinct species, but a nuclear genome-based analysis to confirm this was not conducted. To address this, COTS species nuclear genome sequences were analysed here, sequencing Northern Indian Ocean (NIO) and Red Sea (RS) species genomes for the first time, followed by a comparative analysis with the Pacific Ocean (PO) species. Phylogenetic analysis and ADMIXTURE analysis revealed clear divergences between the three COTS species. Furthermore, within the PO species, the phylogenetic position of the Hawaiian sample was further away from the other Pacific-derived samples than expected based on the mitochondrial data, suggesting that it may be a PO subspecies. The pairwise sequentially Markovian coalescent model showed that the trajectories of the population size diverged by region during the Mid-Pleistocene transition when the sea-level was dramatically decreased, strongly suggesting that the three COTS species experienced allopatric speciation. Analysis of the orthologues indicated that there were remarkable genes with species-specific positive selection in the genomes of the PO and RS species, which suggested that there may be local adaptations in the COTS species.

Hydrogen bond-induced abrupt spin crossover behaviour in 1-D cobalt(II) complexes - the key role of solvate water molecules.

The magnetic properties and structural aspects of the 1-D cobalt(ii) complexes, [Co(pyterpy)Cl2]·2H2O (1·2H2O; pyterpy = 4'-(4'''-pyridyl)-2,2':6',2''-terpyridine) and [Co(pyethyterpy)Cl2]·2H2O (2·2H2O; pyethyterpy = 4'-((4'''-pyridyl)ethynyl)-2,2':6',2''-terpyridine) are reported. In each complex the central cobalt(ii) ion displays an octahedral coordination environment composed of three nitrogen donors from the terpyridine moiety, a nitrogen donor from a pyridyl group and two chloride ligands which occupy the axial sites. 1·2H2O exhibits abrupt spin-crossover (SCO) behaviour (T1/2↓ = 218 K; T1/2↑ = 227 K) along with a thermal hysteresis loop, while 2·2H2O and the dehydrated species 1 and 2 exhibit high-spin (HS) states at 2-300 K as well as field-induced single-molecule magnet (SMM) behaviour attributed to the presence of magnetic anisotropic HS cobalt(ii) species (S = 3/2). 1·2H2O exhibited reversible desorption/resorption of its two water molecules, revealing reversible switching between SCO and SMM behaviour triggered by the dehydration/rehydration processes. Single crystal X-ray structural analyses revealed that 1·2H2O crystalizes in the orthorhombic space group Pcca while 2 and 2·2H2O crystallize in the monoclinic space group P2/n. Each of the 1-D chains formed by 1·2H2O in the solid state are bridged by hydrogen bonds between water molecules and chloride groups to form a 2-D layered structure. The water molecules bridging 1-D chains in 1·2H2O interact with the chloride ligands occupying the axial positions, complementing the effect of Jahn-Teller distortion and contributing to the abrupt SCO behaviour and associated stabilization of the LS state.

Gas sorption of nano-porous supramolecules formed by multi-hydrogen bonded coordination capsules.

[{ReI(CO)3(Hbim)}3(tpta)]2 (1, Hbim- = 2,2'-biimidazolate monoanion, tpta = 2,4,6-tripyridyl-1,3,5-triazine) was prepared as a nano-space supramolecule by using a new group of H-bonded coordination capsules. The hamburger bun-shaped half unit [{ReI(CO)3(Hbim)}3(tpta)] contains six intermolecular H-bonds of Hbim- ligands with complementary dual NHN types, and three [ReI(CO)3(Hbim)] are coordinated by bridging tridentate tpta. Interestingly, mechanical grinding easily would convert single crystals of 1 to an amorphous state with minor crystallinity while maintaining the nano-space pores. The ground sample can reversibly uptake and release small molecules such as CO2 and (CH2Cl)2.

Water Molecule-Induced Reversible Magnetic Switching in a Bis-Terpyridine Cobalt(II) Complex Exhibiting Coexistence of Spin Crossover and Orbital Transition Behaviors.

The development of molecule-based switchable materials remains an important challenge in the field of molecular science. Achievement of a structural phase transition induced by adsorption/desorption of guest molecules in spin crossover (SCO) Co(II) compounds is of significant interest because of the possibility that the spin state of the magnetic anisotropic high-spin (HS, S = 3/2) and low-spin (LS, S = 1/2) states can be switched via the induced changes in associated intermolecular interactions. In this study, we demonstrated a reversible magnetic switching associated with spin state conversion, along with a single-crystal to single-crystal (SCSC) phase transition induced by dehydration/rehydration. [Co(terpy)2](BF4)2·H2O (1·H2O; terpy = 2,2':6',2''-terpyridine) assembles in the solid state via π-π and CH-π interactions involving adjacent terpyridine cores along the ab direction to form two-dimensional (2D) layered domains. 1·H2O exhibits gradual and incomplete SCO, from fully HS to ca. 0.5 HS, and the field-induced single-molecule magnet (SMM) behavior attributed to the presence of the anisotropic partial high-spin Co(II) species. 1·H2O undergoes a SCSC transformation accompanied by a change from the tetragonal space group I41/a to P42/n via a dehydration process. Dehydrated 1 exhibits a reverse thermal hysteresis behavior (T1/2↑ = 287 K; T1/2↓ = 270 K) in the gradual SCO region from fully HS to ca. 0.5 HS, followed by an ordinary thermal hysteresis (T'1/2↑ = 195 K; T'1/2↓ = 155 K) to fully LS Co(II). A temperature-dependent single-crystal X-ray structural analysis revealed that the reverse hysteresis can be attributed to an order/disorder structural phase transition of the BF4- anions involving a symmetry breaking to yield the monoclinic space group P21/n and orbital (angular momentum) transition (LT). Both the SCSC phase transition and magnetic behavior are switchable by dehydration/rehydration processes; thus 1 again adsorbs water at room temperature to give both the original structure and its magnetic behavior.

Solvent vapor-induced polarity and ferroelectricity switching.

Vapor-induced crystal to crystal transformation between non-polar [Fe(sap)(acac)(sol)] (H2sap = 2-salicylideneaminophenol, acac = acethylacetate, sol = MeOH, pyridine) and polar [Fe(sap)(acac)(DMSO)] was demonstrated. It provides an example of switchable ferroelectric behaviour attributted to the structural phase transition triggered by solvent vapour.

Luminescent ionic liquid formed from a melted rhenium(v) cluster.

Recently, non-crystalline coordination materials have been shown to represent a versatile class of functional materials. However, such materials incorporating metal complex clusters have remained largely unexplored. Herein, we demonstrate that a luminescent tetranuclear ReV cluster melts at 489 K, with the cluster structure being maintained in the corresponding supercooled ionic liquid phase.

Slow Magnetic Relaxation Triggered by a Structural Phase Transition in Long-Chain-Alkylated Cobalt(II) Single-Ion Magnets.

The behavior of single-ion magnets (SIMs) that reflects large distortions of their coordination environments caused by the packing of long alkyl chains for two Co(II) complexes of the type [Co(C n-terpy)2](BF4)2 (C n-terpy = 4'-alkoxy-2,2':6',2″-terpyridine; n = 10 (1), 16 (2)) is reported. 1·2MeOH, which features a highly distorted octahedral high-spin Co(II) center, exhibits field-induced slow magnetic relaxation under an applied dc field of 1000 Oe. Further detailed analysis of the relaxation process indicated the prevalence of the Raman process at low temperature. Surprisingly, 2 shows a reverse spin transition (rST) and also exhibits remarkable field-induced SIM behavior, revealing the presence of magnetic anisotropy for this high-spin Co(II) species that is triggered by a structural phase transition. We present here the first examples of the coexistence of field-induced slow magnetic relaxation and rST associated with structural phase transitions involving long-alkyl-chain conformational changes from gauche to anti. These results indicate the prospect of inducing SIM properties in other distorted high-spin Co(II) species bearing long alkyl chains.

Weak ferromagnetism derived from spin canting in an amido-bridged homochiral Mn(iii) 1-D coordination polymer.

A homochiral one-dimensional (1D) Mn(iii) coordination polymer [MnL]n (1) was synthesised employing the N3O-donor tetradentate ligand (L = 2-hydroxy-N-[2-[[(2-aminophenyl)methylene]amino]-2-methylpropyl]-benzamide). The X-ray structure of 1 and its magnetic properties were investigated in detail. The crystal structure of 1 shows a homochiral helical arrangement in which spontaneous resolution has occurred, despite the ligand being achiral. Magnetic characterization revealed an antiferromagnetic interaction between manganese(iii) ions (J = -2.48 cm-1, g = 1.96) that leads to an antiferromagnetic spin-ordering phase transition at TN≈ 7 K. Noteworthily, 1 exhibits weak ferromagnetism with a relatively large coercive field of 3.0 kOe based on the spin canting, indicating the formation of a homochiral weak ferromagnet.

Phosphorescence at Low Temperature by External Heavy-Atom Effect in Zinc(II) Clusters.

Luminescent ZnII clusters [Zn4 L4 (µ3 -OMe)2 X2 ] (X=SCN (1), Cl (2), Br (3)) and [Zn7 L6 (µ3 -OMe)2 (µ3 -OH)4 ]Y2 (Y=I- (4), ClO4 - (5)), HL=methyl-3-methoxysalicylate, exhibiting blue fluorescence at room temperature (λmax =416≈429 nm, Φem =0.09-0.36) have been synthesised and investigated in detail. In one case the external heavy-atom effect (EHE) arising the presence of iodide counter anions yielded phosphorescence with a long emission lifetime (λmax =520 nm, τ=95.3 ms) at 77 K. Single-crystal X-ray structural analysis and time-dependent density-functional theory (TD-DFT) calculations revealed that their emission origin was attributed to the fluorescence from the singlet ligand-centred (1 LC) excited state, and the phosphorescence observed in 4 was caused by the EHE of counter anions having strong CH-I interactions.

Wheel-type heterometallic ferromagnetic clusters: [Ni7-xMx(HL)6(µ3-OMe)4(µ3-OH)2]Cl2 (M = Zn, Co, Mn; x = 1, 3).

Wheel-type heptanuclear heterometallic clusters of stoichiometry [Ni7-xMx(HL)6(µ3-OMe)4(µ3-OH)2]Cl2 (L = 1-(2-hydroxy-3-methoxybenzamido)-2-(benzylideneamino)ethane; M = Zn2+, Co2+, Mn2+; x = 1, 3) were synthesized, and their metal ion dependent ferromagnetic properties were investigated. It was demonstrated that the central position of each cluster was occupied by a Ni2+ ion while other metal ions (Zn2+, Co2+ or Mn2+) were accommodated in peripheral positions. The magnetic interactions, anisotropy and magnetization of the resultant clusters were all influenced by the combinations of metal ions present.

Creating capsules with cubanes.

A sextuply linked capsule incorporating two Ni(ii) cubane units is formed when Ni(ii) salts are reacted with N-aminoalkyl salicylamidato ligands in a 4 : 3 ratio in methanol. With a short (propyl) alkyl substituent, additional chloride counter ions are included in the cavity by occupation of one apex of each of the linked cubanes, while with a longer (pentyl) substituent, perchlorate and tetrafluoroborate anions are included, probably by H-bonding involving hydroxyl groups on the inner apices of the cubanes, indicating that the cavity can be regarded as suited to binding of hydrophilic units despite the lipophilic character of its links. The dicubane capsules show ferromagnetic behaviour typical of Ni(ii) cubanes in general, with coupling constants dependent upon the nature of the salt-derived counter anions.

Intermolecular Interaction Tuning of Spin-Crossover Iron(III) Complexes with Aromatic Counteranions.

Iron(III) spin-crossover (SCO) complexes [Fe(qsal)2]BS·MeOH·H2O (1), [Fe(qsal)2](NS)·MeOH (2), [Fe(qnal)2](NS) (3), and [Fe(qnal)2]PS·MeOH·CH2Cl2 (4) (Hqsal, N-(8-quinolinyl)salicylaldimine; Hqnal, N-(8-quinolinyl)-2-hydroxy-1-naphthaldimine; BS, benzenesulfonate; NS, 1-naphthalenesulfonate; PS, 1-pyrenesulfonate) have been synthesized and characterized by X-ray structure determinations and temperature-dependent magnetic susceptibility measurements. The aromatic counteranions BS, NS, and PS can be used for the tuning of intermolecular coupling through a variety of weak interactions. All of the complexes show temperature-dependent SCO behavior. but the light-induced excited spin-state trapping (LIESST) effect was observed only for 1, 3, and 4 when the samples were illuminated (λ 808 nm) for 1 h at 5 K. In particular, 59% of the LS form of 1 was converted to the metastable HS state by illumination, equal to the highest degree of conversion yet known for LIESST in [Fe(qsal)2]+ derivatives. The lack of a LIESST effect for 2 may be due to the relatively limited degree of interaction between the cations and anions in the lattice, reflected in a much longer minimum Fe···Fe separation in this complex in comparison to the others.

Syntheses, structures and magnetic properties of tetranuclear cubane-type and heptanuclear wheel-type nickel(ii) complexes with 3-methoxysalicylic acid derivatives.

Two ferromagnetic multinuclear Ni(ii) clusters, [Ni4L14(µ3-OMe)4(CH3OH)4] (1) and [Ni7(HL2)6(µ3-OMe)6]Cl2 (2), and a mononuclear complex [NiL3]·2H2O (3) (HL1 = benzyl 2-hydroxy-3-methoxybenzoate; H2L2 = 1-(2-hydroxy-3-methoxybenzamido)-2-(benzylideneamino)ethane; H2L3 = 1-(2-hydroxy-3-methoxybenzamido)-2-(pyridylmethyleneamino)ethane) were synthesised, and their structures and magnetic behaviours were investigated in detail. 1 has a [Ni4O4] cubane structure while 2 has a wheel-like [Ni@Ni6] arrangement. The temperature-dependent magnetic susceptibilities for 1 and 2 are in accord with the presence of dominating intra-cluster ferromagnetic interactions between Ni(ii) ions. The best fits for their behaviours gave the following parameters: J1 = 11.06 cm-1, J2 = 1.43 cm-1, g = 2.29 for 1, and J1 = 6.87 cm-1, J2 = -3.41 cm-1, g = 2.24 for 2.

Crystal structure of [2-({2-[(2-azanidyl-benzyl-idene)amino]-benzyl-idene}amino)-4-chloro-phenol-ato]nickel(II).

The title complex, [Ni(C20H14ClN3O)], with an asymmetrically chloride-appended Schiff base ligand has been synthesized and structurally characterized at 100 K. In the compound, the central nickel(II) ion has a square-planar coordination geometry with N3O donors of the π-conjugated tetra-dentate Schiff base ligand. In the crystal, the complexes are connected into an inversion dimer via an Ni⋯Ni inter-action [3.1753 (5) Å] and a pair of π-π inter-actions [centroid-centroid distance = 3.8416 (16) Å]. The dimers are linked via a C-H⋯Cl hydrogen bond, forming a chain along the c-axis direction. The dimer chains inter-act with each other through π-π inter-actions [centroid-centroid distance = 3.8736 (16) Å], forming a layer expanding parallel to the ac plane.