RESUMO
Missing pedigree may produce bias in genomic evaluations. Thus, strategies to deal with this problem have been proposed as using unknown parent groups (UPG) or truncated pedigrees. The aim of this study was to investigate the impact of modeling missing pedigree under ssGBLUP evaluations for productive and reproductive traits in dairy buffalos using different approaches: 1) traditional BLUP without UPG (BLUP), 2) traditional BLUP including UPG (BLUP/UPG), 3) ssGBLUP without UPG (ssGBLUP), 4) ssGBLUP including UPG in the A and A22 matrices (ssGBLUP/A_UPG), 5) ssGBLUP including UPG in all elements of the H matrix (ssGBLUP/H_UPG), 6) BLUP with pedigree truncation for the last 3 generations (BLUP/truncated), and 7) ssGBLUP with pedigree truncation for the last 3 generations (ssGBLUP/ truncated). UPGs were not used in the scenarios with truncated pedigree. A total of 3,717, 4,126 and 3,823 records of the first lactation for accumulated 305 d milk yield (MY), age at first calving (AFC) and lactation length (LL), respectively were used. Accuracies ranged from 0.27 for LL (BLUP) to 0.46 for MY (BLUP), bias ranged from -0.62 for MY (ssGBLUP) to 0.0002 for AFC (BLUP/truncated), and dispersion ranged from 0.88 for MY (BLUP/ A_UPG) to 1.13 for LL (BLUP). Genetic trend showed genetic gains for all traits across 20 years of selection and the impact of including either genomic information, UPG or pedigree truncation under GEBV accuracies ranged among the evaluated traits. Overall, methods using UPGs, truncation pedigree and genomic information exhibited potential to improve GEBV accuracies, bias and dispersion for all traits compared with other methods. Truncated scenarios promoted high genetic gains. In small populations with few genotyped animals, combining truncated pedigree or UPG with genomic information is a feasible approach to deal with missing pedigrees.
RESUMO
Properly quantifying environmental heat stress (HS) is still a major challenge in livestock breeding programs, especially as adverse climatic events become more common. The definition of critical periods and climatic variables to be used as the environmental gradient is a key step for genetically evaluating heat tolerance (HTol). Therefore, the main objectives of this study were to define the best critical periods and environmental variables (ENV) to evaluate HT and estimate variance components for HT in Large White pigs. The traits included in this study were ultrasound backfat thickness (BFT), ultrasound muscle depth (MDP), piglet weaning weight (WW), off-test weight (OTW), interval between farrowing (IBF), total number of piglets born (TNB), number of piglets born alive (NBA), number of piglets born dead (NBD), number of piglets weaned (WN), and weaning to estrus interval (IWE). Seven climatic variables based on public weather station data were compared based on three criteria, including the following: (1) strongest G×E estimate as measured by the slope term, (2) ENV yielding the highest theoretical accuracy of the genomic estimated breeding values (GEBV), and (3) variable yielding the highest distribution of GEBV per ENV. Relative humidity (for BFT, MDP, NBD, WN, and WW) and maximum temperature (for OTW, TNB, NBA, IBF, and IWE) are the recommended ENV based on the analyzed criteria. The acute HS (average of 30 days before the measurement date) is the critical period recommended for OTW, BFT, and MDP in the studied population. For WN, WW, IBF, and IWE, a period ranging from 34 days prior to farrowing up to weaning is recommended. For TNB, NBA, and NBD, the critical period from 20 days prior to breeding up to 30 days into gestation is recommended. The genetic correlation values indicate that the traits were largely (WN, WW, IBF, and IWE), moderately (OTW, TNB, and NBA), or weakly (MDP, BFT, and NBD) affected by G×E interactions. This study provides relevant recommendations of critical periods and climatic gradients for several traits in order to evaluate HS in Large White pigs. These observations demonstrate that HT in Large White pigs is heritable, and genetic progress can be achieved through genetic and genomic selection.
RESUMO
Objetivou-se com este estudo estimar parâmetros genéticos para o número total de leitões nascidos (NTLN), número de leitões nascidos vivos (NLNV) e número de leitões vivos aos cinco dias de idade (NLV5) com modelos de regressão aleatória e averiguar melhor modelagem da variância residual na avaliação das trajetórias genéticas do tamanho da leitegada de fêmeas Landrace e Large White. Os dados utilizados foram provenientes de uma granja de melhoramento genético de suínos e continham 2.388 observações de fêmeas Landrace e 2.325 de Large White. Os modelos de melhor ajuste para o NTLN e NLV5 foram os que consideraram a variância residual homogênea e, para NLNV, o modelo com quatro classes de variâncias residuais foi o mais adequado (BIC). Para Landrace, o efeito materno não foi significativo. O modelo que incluiu o efeito materno e quatro classes de variância residual foi o que apresentou melhor ajuste para NTLN na raça Large White, sendo os modelos sem efeito materno e com variância residual homogênea os mais adequados para NLNV e NLV5. As herdabilidades estimadas variaram de baixas a altas (0,08-0,34; 0,04-0,29 e 0,05-0,21 na raça Landrace e 0,16-0,30; 0,10-0,37 e 0,09-0,32 na Large White, para NTLN, NLNV e NLV5, respectivamente). A alta correlação de posto entre os valores genéticos do NLNV e NLV5 sugere que não há necessidades do controle do NLV5 nesse programa de melhoramento genético. Maiores ganhos podem ser obtidos pela seleção no NLNV de fêmeas primíparas, em função da diminuição do intervalo de gerações.
This study aimed to estimate genetic parameters for total number of piglets born (NTLN), number of piglets born alive (NLNV) and number of piglets alive at five days of age (NLV5) using random regression models and to evaluate the best way for modelling the residual variance in the description of the genetic trajectories of litter size in Landrace and Large White breeds. The data came from a swine breed improvement program, and a total of 2388 and 2325 litter size records of Landrace and Large White, respectively were used in the analyses. The models considering homogenous residual variance showed the best goodness of fit for NTLN and NLV5 and the model with four classes of residual variances was most appropriate for NLNV (BIC). In the Landrace breed the maternal effect was not significant. The model including maternal effect and four classes of residual variance adequately described NTLN of Large White breed and the models without maternal effect and with homogeneous residual variance were most appropriate to describe NLNV and NLV5. The estimated heritability for NTLN, NLNV and NLV5 ranged from low to high (0.08-0.34, 0.04-0.29 and 0.05-0.21 in Landrace breed and 0.16-0.30, 0.10-0.37, 0.09-0.32 in Large White breed.). The magnitude of the rank correlations between breeding values of NLNV and NLV5 suggests that the recording of NLV5 is not necessary in this breed improvement program. High genetic gains can be obtained by selecting NLNV of primiparous females, due to the reduction in the generation interval.
Assuntos
Animais , Recém-Nascido , Animais Recém-Nascidos/genética , Suínos , Melhoramento GenéticoRESUMO
O carrapato Rhipicephalus microplus é um dos principais parasitos dos rebanhos bovinos. Diferentes grupos de carrapaticidas sintéticos têm sido empregados para o controle desse ácaro, contudo, o uso constante desses produtos tem selecionado populações resistentes. Na tentativa de minimizar esses impactos tem-se buscado avaliar fitoterápicos para o controle desse parasito. Assim, objetivou-se analisar a eficácia in vitro do extrato aquoso do algodão de seda em diferentes concentrações no controle da postura e eclodibilidade dos ovos do R. microplus. Foram avaliados os efeitos das concentrações 1, 5, 10, 25, 50, 75 e 100% do extrato aquoso obtido juntamente com controles com água destilada ou com cipermetrina, 12,5 mg L-1, associada a organofosforado, 150 mg L-1, sobre a eficiência reprodutiva do carrapato. Foi realizado o biocarrapaticidograma sendo que a eficácia acaricida das concentrações 5, 25 e 100% foram superiores àquela observada para o produto comercial utilizado, que correspondeu a 93,98%, indicando a importância de futuras pesquisas para avaliar o potencial toxigênico e a eficácia in vivo dessa planta para o controle do R. microplus .
The tick Rhipicephalus microplus is one of the main parasites of bovine herds. Different groups of synthetic acaricides have been used to control this mite; however, the constant use of these products has selected resistant populations. In an attempt to minimize these impacts, researchers have tried to evaluate herbal remedies to control this parasite. Therefore, the aim of this study was to analyze the in vitro efficacy of aqueous extract of silk cotton at different concentrations to control the hatchability of R. microplus eggs. The effects of the concentrations 1, 5, 10, 25, 50, 75 and 100% aqueous extract together with controls with distilled water or with cypermethrin, 12.5 mg L-1, associated with organophosphate, 150 mg L-1, were assessed on the reproductive efficiency of the tick. Immersion test was performed and the acaricide efficacy of the 5, 25 and 100% concentrations were higher than that obtained for the commercial product, which corresponded to 93.98%, indicating the importance of further research to assess the toxigenic potential and the in vivo efficacy of this plant to control R. microplus .