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1.
Clin Oral Investig ; 28(6): 307, 2024 May 11.
Artigo em Inglês | MEDLINE | ID: mdl-38733524

RESUMO

PURPOSE: The factors related to pericoronitis severity are unclear, and this study aimed to address this knowledge gap. MATERIALS AND METHODS: In total, 113 patients with pericoronitis were included, and their demographic, clinical, and radiographic characteristics were recorded. The Patient-Clinician Pericoronitis Classification was used to score and categorize the severity of pericoronitis. Statistical analysis was conducted to examine the participants' characteristics, validity of the Patient-Clinician Pericoronitis Classification, and risk factors associated with the severity of pericoronitis. RESULTS: The demographic, clinical, and radiographic characteristics of males and females were similar, except for Winter's classification, pain, and intraoral swelling. The constructive validity of the Patient-Clinician Pericoronitis Classification was confirmed with three latent factors, including infection level, patient discomfort, and social interference. Ordinal logistic multivariate regression analysis revealed that upper respiratory tract infection was the sole risk factor associated with pericoronitis severity in males (odds ratio = 4.838). In females, pericoronitis on the right side (odds ratio = 2.486), distal radiolucency (odds ratio = 5.203), and menstruation (odds ratio = 3.416) were significant risk factors. CONCLUSION: This study demonstrated the constructive validity of the Patient-Clinician Pericoronitis Classification. Among females, pericoronitis in mandibular third molars on the right side with radiolucency in menstruating individuals was more severe. In males, upper respiratory tract infection was the sole risk factor associated with pericoronitis severity. CLINICAL RELEVANCE: Individuals with risk factors should be aware of severe pericoronitis in the coming future.


Assuntos
Dente Serotino , Pericoronite , Índice de Gravidade de Doença , Humanos , Masculino , Feminino , Fatores de Risco , Dente Serotino/diagnóstico por imagem , Pericoronite/complicações , Adulto , Adolescente , Mandíbula/diagnóstico por imagem
2.
Int J Med Sci ; 21(6): 1072-1078, 2024.
Artigo em Inglês | MEDLINE | ID: mdl-38774745

RESUMO

Background: This study aimed to evaluate the clinical characteristics, patient's management approaches, and outcomes of the COVID-19 patients in Phu Tho Province, Vietnam. Methods: A retrospective, multicenter study of 2166 COVID-19 patients in 13 hospitals in Phutho Province, Vietnam. The subjects were divided into 3 groups based on vaccination status: unvaccinated group, 1st dose of vaccine group, 2nd dose of vaccine group. The clinical characteristics, management approaches, and outcomes were collected and compared between the 3 groups. Results: The hospitalization rate of the 3 groups decreased from the unvaccinated group, the 1st dose of vaccinated group, to the 2nd dose of vaccinated group, 42.61%; 30,24% and 27,15% respectively. The 19-40 years old group had the highest hospitalization rate (38,1%) together with the group that had not accepted the full COVID 19 vaccination dose (57,64%). The 2nd dose of vaccinated group had the lowest percentages of high temperature, cough, dyspnea, chest pain and sore throat. The unvaccinated group had the highest heart rate, respiratory rate and SpO2 compared to the two other groups. The percentage needing Immunomodulation and Anticoagulant Therapy was highest (6.8% and 1.4 % respectively) in the unvaccinated group. The percentage receiving Antiviral Therapy was highest (42,5%) in those who had received the 2nd dose of vaccine. Conclusions: COVID-19 vaccination improved the symptoms of the patients and should be accepted in all ages.


Assuntos
COVID-19 , Hospitalização , SARS-CoV-2 , Humanos , Vietnã/epidemiologia , COVID-19/epidemiologia , Masculino , Adulto , Feminino , Estudos Retrospectivos , Pessoa de Meia-Idade , Hospitalização/estatística & dados numéricos , Adulto Jovem , Vacinas contra COVID-19/administração & dosagem , Idoso , Adolescente , Vacinação/estatística & dados numéricos , Serviço Hospitalar de Emergência/estatística & dados numéricos
3.
NPJ Antimicrob Resist ; 2(1): 12, 2024.
Artigo em Inglês | MEDLINE | ID: mdl-38686335

RESUMO

Infectious diarrhoeal diseases remain a substantial health burden in young children in low- and middle-income countries. The disease and its variable treatment options significantly alter the gut microbiome, which may affect clinical outcomes and overall gut health. Antibiotics are often prescribed, but their impact on the gut microbiome during recovery is unclear. Here, we used 16S rRNA sequencing to investigate changes in the gut microbiota in Vietnamese children with acute watery diarrhoea, and highlight the impact of antibiotic treatment on these changes. Our analyses identified that, regardless of treatment, recovery was characterised by reductions in Streptococcus and Rothia species and expansion of Bacteroides/Phocaeicola, Lachnospiraceae and Ruminococcacae taxa. Antibiotic treatment significantly delayed the temporal increases in alpha- and beta-diversity within patients, resulting in distinctive patterns of taxonomic change. These changes included a pronounced, transient overabundance of Enterococcus species and depletion of Bifidobacterium pseudocatenulatum. Our findings demonstrate that antibiotic treatment slows gut microbiota recovery in children following watery diarrhoea.

4.
Spectrochim Acta A Mol Biomol Spectrosc ; 313: 124137, 2024 May 15.
Artigo em Inglês | MEDLINE | ID: mdl-38479225

RESUMO

A simple paper-based chromatography coupling with nickel foam decorated Au nanodendrite (PP-AuND/NiF) was fabricated for simultaneous separation and surface-enhanced Raman scattering (SERS) detection of Rhodamine-6G (R6G) from a mixture of analytes. The three-dimensional porous nickel foam (NiF) was employed as a sampling diffusion platform, and AuND with a high surface active area beneficial for SERS efficiency was electro-deposited directly onto the NiF frame. The structure of AuND/NiF was characterized by X-ray diffraction and scanning electron microscopy. The AuND/NiF could detect R6G at 0.1 nM, and the enhancement factor was 1.84 x 106. The AuND/NiF was durable, with a slight signal decrease after 6 m of drop-testing. Also, upon three days of exposure to ambient air, the signal droped only 3.35 %. Subsequently, the PP-AuND/NiF was constructed by directly situating AuND/NiF on a paper strip, serving as a sample in and out to AuND/NiF. A mixture of two SERS active compounds, namely 2-Naphthalenethiol (2-NpSH) and Rhodamine 6G (R6G), was prepared in ethanol: water (1:1) solution to evaluate PP-AuND/NiF separation capability. Raman measurements along different distances of AuND/NiF were performed, and the signal of 2-NpSH was dismissed after 3.0 mm, while R6G's signals were observed throughout AuND/NiF. In general, the PP-AuND/NiF demonstrated effective separation and SERS measurement of analytes in a mixture, which could be applicable for more complex samples in the future, especially in clinical analysis.

5.
J Nat Med ; 78(3): 537-546, 2024 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-38517624

RESUMO

A phytochemical investigation of Kaempferia champasakensis rhizomes led to the isolation of a new 3,4-seco-isopimarane diterpene, kaempferiol A (1), and three new isopimarane diterpenes, kaempferiols B-D (2-4), together with six known isopimarane diterpenes (5-10). The structures of 1-4 were elucidated by extensive spectroscopic analyses, including HR-ESI-MS, UV, IR, and 1D and 2D NMR. The absolute configurations of 1, 3, and 4 were determined by ECD calculations, while that of 2 was established using the modified Mosher method. All isolated compounds were tested for cytotoxicity against three human cancer cell lines, lung cancer (A549), cervical cancer (HeLa), and breast cancer (MCF-7). Among them, 6 and 7 showed moderate cytotoxic activities against the three tested cell lines, with IC50 values ranging from 38.04 to 27.77 µM, respectively.


Assuntos
Antineoplásicos Fitogênicos , Diterpenos , Zingiberaceae , Humanos , Diterpenos/química , Diterpenos/farmacologia , Diterpenos/isolamento & purificação , Zingiberaceae/química , Vietnã , Estrutura Molecular , Antineoplásicos Fitogênicos/farmacologia , Antineoplásicos Fitogênicos/química , Linhagem Celular Tumoral , Rizoma/química , Extratos Vegetais/química , Extratos Vegetais/farmacologia
6.
Zootaxa ; 5406(1): 87-104, 2024 Feb 02.
Artigo em Inglês | MEDLINE | ID: mdl-38480163

RESUMO

A new species of dibamid lizard, Dibamus deimontis sp. nov., is described based on eight specimens collected from the highlands of Nui Chua Mountain within Nui Chua National Park, Ninh Thuan Province, southern Vietnam. Dibamus deimontis sp. nov. co-occurs with the recently described Dibamus tropcentr, but is recorded at higher elevations (670700 m a.s.l. vs. 200280 m a.s.l.), and in a different habitat and microhabitats than the previous species. Our study represents the first report on the near sympatric occurrence of two Dibamus species. The new species can be distinguished from other congeners by the following combination of characters: rostral, labial and nasal sutures incomplete; two to three postoculars; three to five scales on the posterior edge of infralabial; 2225 midbody scale rows; 193225 ventral scales; 4755 subcaudal scales; 115 presacral and 27 tail vertebrae (in a single male specimen examined); and maximum snout-vent length 136.2 mm. We suggest this species should be considered as Vulnerable (VU) following the IUCNs Red List categories. Our study brings the number of species in the genus Dibamus to 26; Dibamus deimontis sp. nov. is the eighth species of Dibamus recorded in Vietnam, and underlines the importance of the country as a local center of reptilian diversity in Southeast Asia.


Assuntos
Lagartos , Parques Recreativos , Masculino , Animais , Vietnã , Estruturas Animais , Serpentes , Filogenia , Distribuição Animal
7.
J Genet Eng Biotechnol ; 22(1): 100356, 2024 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-38494260

RESUMO

BACKGROUND: Sommeratia caseolaris is considered the most important mangrove species for reforestation and conservation programs. Therefore, the knowledge of genetic diversity and the population structure of the species has important implications both for the conservation of existing genetic resources and development programs. In the present study, the genetic diversity and structure population of eight populations of S. caseolaris from the Northern to the Southern Coast of Vietnam were determined using nine ISSR molecular markers. RESULTS: Eight populations of the mangrove species Sonneratia caseolaris were sampled across the natural range in Vietnam to evaluate the genetic diversity of the species. Nine ISSR markers were used to analyse 30 individuals from each population. There were moderate to high levels of genetic diversity (I = 0.447; h = 0.300). PCoA analysis gave very similar results to UPGMA dendrogram construction with the eight populations clustered into three genetic groups which mostly aligned with geographical distances among them. AMOVA analysis results indicated that most (81 %) of the genetic variation was within populations. CONCLUSION: The current study also indicates the high level of genetic variation existing among and within the natural population of S. caseolaris in Vietnam. These results open new perspectives towards the conservation of the species' genetic resources and their future use in conservation and reforestation programs.

8.
J Microbiol Biotechnol ; 34(3): 580-588, 2024 Mar 28.
Artigo em Inglês | MEDLINE | ID: mdl-38321644

RESUMO

Microbial communities in mangrove forests have recently been intensively investigated to explain the ecosystem function of mangroves. In this study, the soil microbial communities under young (<11 years-old) and old (>17 years-old) mangroves have been studied during dry and wet seasons. In addition, biogeochemical properties of sediments and methane emission from the two different mangrove ages were measured. The results showed that young and old mangrove soil microbial communities were significantly different on both seasons. Seasons seem to affect microbial communities more than the mangrove age does. Proteobacteria and Chloroflexi were two top abundant phyla showing >15%. Physio-chemical properties of sediment samples showed no significant difference between mangrove ages, seasons, nor depth levels, except for TOC showing significant difference between the two seasons. The methane emission rates from the mangroves varied depending on seasons and ages of the mangrove. However, this did not show significant correlation with the microbial community shifts, suggesting that abundance of methanogens was not the driving factor for mangrove soil microbial communities.


Assuntos
Microbiota , Áreas Alagadas , Ecossistema , Bactérias/genética , Estações do Ano , Metano , Parques Recreativos , Solo/química
9.
Environ Pollut ; 342: 122974, 2024 Feb 01.
Artigo em Inglês | MEDLINE | ID: mdl-37981181

RESUMO

High-throughput screening instrument was developed for photocatalytic water purification, enabling the simultaneous testing of 132 photocatalytic reactions under uniform visible light irradiation, temperature control, and stirring. The instrument was used to investigate the effects of different catalysts (TiO2, ZnO, α-Fe2O3) and environmental waters (seawater, urban wastewater, and industrial wastewater) on dye degradation. It was observed environmental ions, particularly carbonate and phosphate ions, significantly reduced catalyst activity by inhibiting the adsorption of dye molecules. To develop effective catalysts for dye degradation in industrial wastewater, 15 types of noble metal nanoparticles (NPs) were supported on photocatalysts. The study found that noble metal NPs with high work functions and oxidation resistance, such as Au and Pt, exhibited higher activity even in the industrial wastewater, likely converting environmental ions into active species. These findings, based on 432 test results, demonstrate the effectiveness of the developed high-throughput screening instrument for optimizing photocatalytic water purification.


Assuntos
Águas Residuárias , Purificação da Água , Titânio , Luz , Purificação da Água/métodos , Íons , Catálise
10.
Environ Res ; 245: 118087, 2024 Mar 15.
Artigo em Inglês | MEDLINE | ID: mdl-38159664

RESUMO

This investigation aims to assess the levels of human exposure to airborne particulate matter (PM) in various locations of a natural stone quarry for the first time based on simultaneous measurements of both PM mass and number concentrations (PMC and PNC). A quarry located in Danang city, Vietnam, considered to be a "hotspot" of air pollution in the city, was selected for detailed investigations. Both PMC and PNC were found to be significantly higher (1.2-6.0 times) within the quarry compared to surrounding areas. Mechanical activities during mining, notably crushing, screening, hauling, and loading stones, contributed to increased emissions of PM in the coarser mode (1-10 µm) compared to the accumulation mode (0.1-1 µm) and thus increased deposition of PM1-10 in the human upper respiratory tract. In contrast, combustion activities, especially the diesel engine exhaust from various machines and vehicles used in the quarry, resulted in increased emissions of small particles in the accumulation mode that dominated the PNC and in their deposition in the lower respiratory tract. Simultaneous measurements of PNC and PMC revealed that the PM counts were strongly associated with PM deposition in the alveolar region (accounting for ≈ 76% of total PNC of particles less than 10 µm, N10), while the PM mass concentration was a better indicator of the deposition of PM in the head airway region (≈92% of total PMC of PM10). Overall, this study demonstrates the significance of measuring both PNC and PMC to assess PM exposure levels, regional respiratory doses, and potential health effects associated with human exposure to PM generated from stone quarrying activities. The novelty of this work is the integration of real-time mass and number concentrations of PM over the size range from 20 nm to 10 µm to provide insights into respiratory deposited doses of size-fractionated PM among quarry workers.


Assuntos
Poluentes Atmosféricos , Poluição do Ar , Humanos , Poluentes Atmosféricos/análise , Monitoramento Ambiental/métodos , Tamanho da Partícula , Material Particulado/análise , Poluição do Ar/análise , Emissões de Veículos/análise
11.
Future Virol ; 18(8): 501-516, 2023 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-38051989

RESUMO

Aim: To generate mRNAs encoding conserved regions within SARS-CoV-2 ORF1ab which can induce strong T-cell responses to overcome the immune invasion of newly emergent variants. Methods: We selected two conserved regions with a high density of T-cell epitopes using immunoinformatics for mRNA synthesis. The ability of testing mRNAs to activate T cells for IFN-γ production was examined by an ELISpot assay and flow cytometry. Results: Two synthesized mRNAs were successfully translated in MDA-MB-231 cells and had comparable potency to the spike mRNA to induce CD4+ and CD8+ T-cell responses in peripheral blood mononuclear cells in 29 out of 34 participants. Conclusion: This study provides a proof-of-concept for the use of SARS-CoV-2 conserved regions to develop booster vaccines capable of eliciting T-cell-mediated immunity.

12.
Environ Health Insights ; 17: 11786302231211058, 2023.
Artigo em Inglês | MEDLINE | ID: mdl-38021104

RESUMO

Reverse logistics systems are now acknowledged as being crucial for enterprises to enhance their overall financial and environmental performance, particularly in developing nations where they face more challenges on both fronts. The majority of researchers examined drivers and barriers to implementation in developed nations. This study aims to investigate the main factors that positively influence the practice of reverse logistics in a developing country such as Vietnam. The study employed a sample of 287 managers within 5 industries. According to the findings, 4 key factors influenced the reverse logistics implementation in developing countries: economic drivers, competitive drivers, outsourcing drivers, and environmental drivers. Regulation drivers and reputation drivers have little influence on reverse logistics performance, contrary to predictions. The findings help scholars in understanding the factors influencing reverse logistics operations in emerging nations. Furthermore, the findings demonstrate differences in the drivers of reverse logistics execution in developing and developed countries.

13.
Science ; 382(6666): 81-87, 2023 Oct 06.
Artigo em Inglês | MEDLINE | ID: mdl-37797004

RESUMO

For almost a century, magnetic oscillations have been a powerful "quantum ruler" for measuring Fermi surface topology. In this study, we used Landau-level spectroscopy to unravel the energy-resolved valley-contrasting orbital magnetism and large orbital magnetic susceptibility that contribute to the energies of Landau levels of twisted double-bilayer graphene. These orbital magnetism effects led to substantial deviations from the standard Onsager relation, which manifested as a breakdown in scaling of Landau-level orbits. These substantial magnetic responses emerged from the nontrivial quantum geometry of the electronic structure and the large length scale of the moiré lattice potential. Going beyond traditional measurements, Landau-level spectroscopy performed with a scanning tunneling microscope offers a complete quantum ruler that resolves the full energy dependence of orbital magnetic properties in moiré quantum matter.

14.
Commun Biol ; 6(1): 1007, 2023 10 03.
Artigo em Inglês | MEDLINE | ID: mdl-37789208

RESUMO

Salmonella enterica serotype 1,4,[5],12:i:- (Typhimurium monophasic variant) of sequence type (ST) 34 has emerged as the predominant pandemic genotype in recent decades. Despite increasing reports of resistance to antimicrobials in Southeast Asia, Salmonella ST34 population structure and evolution remained understudied in the region. Here we performed detailed genomic investigations on 454 ST34 genomes collected from Vietnam and diverse geographical sources to elucidate the pathogen's epidemiology, evolution and antimicrobial resistance. We showed that ST34 has been introduced into Vietnam in at least nine occasions since 2000, forming five co-circulating major clones responsible for paediatric diarrhoea and bloodstream infection. Most expansion events were associated with acquisitions of large multidrug resistance plasmids of IncHI2 or IncA/C2. Particularly, the self-conjugative IncA/C2 pST34VN2 (co-transferring blaCTX-M-55, mcr-3.1, and qnrS1) underlies local expansion and intercontinental spread in two separate ST34 clones. At the global scale, Southeast Asia was identified as a potential hub for the emergence and dissemination of multidrug resistant Salmonella ST34, and mutation analysis suggests of selection in antimicrobial responses and key virulence factors.


Assuntos
Anti-Infecciosos , Salmonella enterica , Humanos , Criança , Salmonella enterica/genética , Sorogrupo , Farmacorresistência Bacteriana Múltipla/genética , Plasmídeos/genética , Salmonella , Sudeste Asiático/epidemiologia
15.
Front Immunol ; 14: 1251603, 2023.
Artigo em Inglês | MEDLINE | ID: mdl-37731488

RESUMO

Introduction: Neoantigen-based immunotherapy has emerged as a promising strategy for improving the life expectancy of cancer patients. This therapeutic approach heavily relies on accurate identification of cancer mutations using DNA sequencing (DNAseq) data. However, current workflows tend to provide a large number of neoantigen candidates, of which only a limited number elicit efficient and immunogenic T-cell responses suitable for downstream clinical evaluation. To overcome this limitation and increase the number of high-quality immunogenic neoantigens, we propose integrating RNA sequencing (RNAseq) data into the mutation identification step in the neoantigen prediction workflow. Methods: In this study, we characterize the mutation profiles identified from DNAseq and/or RNAseq data in tumor tissues of 25 patients with colorectal cancer (CRC). Immunogenicity was then validated by ELISpot assay using long synthesis peptides (sLP). Results: We detected only 22.4% of variants shared between the two methods. In contrast, RNAseq-derived variants displayed unique features of affinity and immunogenicity. We further established that neoantigen candidates identified by RNAseq data significantly increased the number of highly immunogenic neoantigens (confirmed by ELISpot) that would otherwise be overlooked if relying solely on DNAseq data. Discussion: This integrative approach holds great potential for improving the selection of neoantigens for personalized cancer immunotherapy, ultimately leading to enhanced treatment outcomes and improved survival rates for cancer patients.


Assuntos
Bioensaio , Imunoterapia , Humanos , Sequência de Bases , ELISPOT , Mutação , RNA
16.
J Biol Chem ; 299(9): 105081, 2023 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-37495105

RESUMO

RecQ helicases are highly conserved between bacteria and humans. These helicases unwind various DNA structures in the 3' to 5'. Defective helicase activity elevates genomic instability and is associated with predisposition to cancer and/or premature aging. Recent single-molecule analyses have revealed the repetitive unwinding behavior of RecQ helicases from Escherichia coli to humans. However, the detailed mechanisms underlying this behavior are unclear. Here, we performed single-molecule studies of WRN-1 Caenorhabditis elegans RecQ helicase on various DNA constructs and characterized WRN-1 unwinding dynamics. We showed that WRN-1 persistently repeated cycles of DNA unwinding and rewinding with an unwinding limit of 25 to 31 bp per cycle. Furthermore, by monitoring the ends of the displaced strand during DNA unwinding we demonstrated that WRN-1 reels in the ssDNA overhang in an ATP-dependent manner. While WRN-1 reeling activity was inhibited by a C. elegans homolog of human replication protein A, we found that C. elegans replication protein A actually switched the reiterative unwinding activity of WRN-1 to unidirectional unwinding. These results reveal that reeling-in ssDNA is an intermediate step in the reiterative unwinding process for WRN-1 (i.e., the process proceeds via unwinding-reeling-rewinding). We propose that the reiterative unwinding activity of WRN-1 may prevent extensive unwinding, allow time for partner proteins to assemble on the active region, and permit additional modulation in vivo.

17.
Front Oncol ; 13: 1127086, 2023.
Artigo em Inglês | MEDLINE | ID: mdl-37223690

RESUMO

Introduction: Breast cancer causes the most cancer-related death in women and is the costliest cancer in the US regarding medical service and prescription drug expenses. Breast cancer screening is recommended by health authorities in the US, but current screening efforts are often compromised by high false positive rates. Liquid biopsy based on circulating tumor DNA (ctDNA) has emerged as a potential approach to screen for cancer. However, the detection of breast cancer, particularly in early stages, is challenging due to the low amount of ctDNA and heterogeneity of molecular subtypes. Methods: Here, we employed a multimodal approach, namely Screen for the Presence of Tumor by DNA Methylation and Size (SPOT-MAS), to simultaneously analyze multiple signatures of cell free DNA (cfDNA) in plasma samples of 239 nonmetastatic breast cancer patients and 278 healthy subjects. Results: We identified distinct profiles of genome-wide methylation changes (GWM), copy number alterations (CNA), and 4-nucleotide oligomer (4-mer) end motifs (EM) in cfDNA of breast cancer patients. We further used all three signatures to construct a multi-featured machine learning model and showed that the combination model outperformed base models built from individual features, achieving an AUC of 0.91 (95% CI: 0.87-0.95), a sensitivity of 65% at 96% specificity. Discussion: Our findings showed that a multimodal liquid biopsy assay based on analysis of cfDNA methylation, CNA and EM could enhance the accuracy for the detection of early- stage breast cancer.

18.
Zootaxa ; 5228(4): 411-447, 2023 Jan 16.
Artigo em Inglês | MEDLINE | ID: mdl-37044645

RESUMO

The Vietnamese fauna of the genus Scolopocryptops Newport, 1844 was reviewed based on recently collected specimens and material from Zoological Museum of the Moscow Lomonosov State University (ZMMU) and Naturhistorisches Museum Wien (NHMW). As a result of study of 164 specimens from 13 sampling regions, four species have been recognized, of which S. rubiginosus C.L. Koch, 1878 and S. spinicaudus Wood, 1862 already reported from Vietnam, S. hoanglieni described as n. sp., and S. capillipedatus (Takakuwa, 1938) for the first time recorded for this country. S. broelemanni esulcata Attems, 1938 was redescribed and confirmed as a valid. The COI fragments were obtained for the above mentioned species and the K2P genetic divergence between Vietnamese Scolopocryptops species was preliminarily estimated. New data on intraspecific variations of spiracle number in Scolopocryptops, an identification key for East Asian species and the general list of species of Scolopocryptops are provided.


Assuntos
Artrópodes , Quilópodes , Animais , Vietnã , Madeira
19.
Bioinformatics ; 39(5)2023 05 04.
Artigo em Inglês | MEDLINE | ID: mdl-37094220

RESUMO

MOTIVATION: Predicting the binding between T-cell receptor (TCR) and peptide presented by human leucocyte antigen molecule is a highly challenging task and a key bottleneck in the development of immunotherapy. Existing prediction tools, despite exhibiting good performance on the datasets they were built with, suffer from low true positive rates when used to predict epitopes capable of eliciting T-cell responses in patients. Therefore, an improved tool for TCR-peptide prediction built upon a large dataset combining existing publicly available data is still needed. RESULTS: We collected data from five public databases (IEDB, TBAdb, VDJdb, McPAS-TCR, and 10X) to form a dataset of >3 million TCR-peptide pairs, 3.27% of which were binding interactions. We proposed epiTCR, a Random Forest-based method dedicated to predicting the TCR-peptide interactions. epiTCR used simple input of TCR CDR3ß sequences and antigen sequences, which are encoded by flattened BLOSUM62. epiTCR performed with area under the curve (0.98) and higher sensitivity (0.94) than other existing tools (NetTCR, Imrex, ATM-TCR, and pMTnet), while maintaining comparable prediction specificity (0.9). We identified seven epitopes that contributed to 98.67% of false positives predicted by epiTCR and exerted similar effects on other tools. We also demonstrated a considerable influence of peptide sequences on prediction, highlighting the need for more diverse peptides in a more balanced dataset. In conclusion, epiTCR is among the most well-performing tools, thanks to the use of combined data from public sources and its use will contribute to the quest in identifying neoantigens for precision cancer immunotherapy. AVAILABILITY AND IMPLEMENTATION: epiTCR is available on GitHub (https://github.com/ddiem-ri-4D/epiTCR).


Assuntos
Antígenos , Peptídeos , Humanos , Peptídeos/metabolismo , Antígenos/química , Epitopos/química , Receptores de Antígenos de Linfócitos T/química , Linfócitos T/metabolismo
20.
Int Dent J ; 73(5): 692-700, 2023 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-36868979

RESUMO

OBJECTIVES: The early or delayed surgical removal of an asymptomatic lower third molar (M3) in orthodontic patients remains controversial. This study aimed to determine the changes in the impacted level of M3 such as angulation, vertical position, and eruption space, after orthodontic treatment in 3 groups, namely non-extraction (NE), first premolar (P1) extraction, and second premolar (P2) extraction. METHODS: Relevant angles and distances related to 334 M3s from 180 orthodontic patients were assessed pre- and posttreatment. Angle between lower second molar (M2) and M3 (M3-M2) was used for evaluating M3 angulation. For M3 vertical position, distances from occlusal plane to the highest cuspid (Cus-OP) and fissure (Fis-OP) of M3 were used. Distances from the distal surface of M2 to anterior border (J-DM2) and centre (Xi-DM2) of the ramus were used for assessing M3 eruption space. Pre- and posttreatment values of the angle and distance in each group were compared using a paired-sample t test. Measurements of the 3 groups were compared using analysis of variance. Hence, multiple linear regression (MLR) analysis was used to determine significant factors that impacted changes in M3s' related measurements. Independent factors used for MLR analysis included sex, treatment starting age, pretreatment respective angle/distance, and premolar extraction (NE/P1/P2). RESULTS: M3 angulation, vertical position, and eruption space at posttreatment were significantly different from those at pretreatment in all 3 groups. MLR analysis showed that P2 extraction significantly improved M3 vertical position (P < .05) and eruption space (P < .001). P1 extraction significantly decreased Cus-OP (P = .014) and eruption space (P < .001). Treatment starting age was significant factor that affected Cus-OP (P = .001) and M3 eruption space (P < .001). CONCLUSIONS: After orthodontic treatment, M3 angulation, vertical position, and eruption space changed in favour of the impacted level. These changes in the 3 groups were clearer in order: NE, P1, and P2, respectively.


Assuntos
Dente Serotino , Dente Impactado , Humanos , Extração Dentária , Dente Molar , Assistência Odontológica , Erupção Dentária , Dente Impactado/cirurgia , Mandíbula
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