Short-term methane emissions from 2 dairy farms in California estimated by different measurement techniques and US Environmental Protection Agency inventory methodology: A case study.

Reported estimates of CH4 emissions from ruminants and manure management are up to 2 times higher in atmospheric top-down calculations than in bottom-up (BU) inventories. We explored this discrepancy by estimating CH4 emissions of 2 dairy facilities in California with US Environmental Protection Agency (US EPA) methodology, which is used for BU inventories, and 3 independent measurement techniques: (1) open-path measurements with inverse dispersion modeling (hereafter open-path), (2) vehicle measurements with tracer flux ratio method, and (3) aircraft measurements with the closed-path method. All 3 techniques were used to estimate whole-facility CH4 emissions during 3 to 6 d per farm in the summer of 2016. In addition, open-path was used to estimate whole-facility CH4 emissions over 13 to 14 d per farm in the winter of 2017. Our objectives were to (1) compare whole-facility CH4 measurements utilizing the different measurement techniques, (2) compare whole-facility CH4 measurements to US EPA inventory methodology estimates, and (3) compare CH4 emissions between 2 dairies. Whole-facility CH4 estimates were similar among measurement techniques. No seasonality was detected for CH4 emissions from animal housing, but CH4 emissions from liquid manure storage were 3 to 6 times greater during the summer than during the winter measurement periods. The findings confirm previous studies showing that whole-facility CH4 emissions need to be measured throughout the year to estimate and evaluate annual inventories. Open-path measurements for liquid manure storage emissions were similar to monthly US EPA estimates during the summer, but not during the winter measurement periods. However, the numerical difference was relatively small considering yearly emission estimates. Manure CH4 emissions contributed 69 to 79% and 26 to 47% of whole-facility CH4 emissions during the summer and winter measurement periods, respectively. Methane yields from animal housing were similar between farms (on average 20.9 g of CH4/kg of dry matter intake), but CH4 emissions normalized by volatile solids (VS) loading from liquid manure storage (g of CH4 per day/kg of VS produced by all cattle per day) at 1 dairy were 1.7 and 3.5 times greater than at the other during the summer (234 vs. 137 g of CH4/kg of VS) and winter measurement periods (78 vs. 22 g of CH4/kg of VS), respectively. We attributed much of this difference to the proportion of manure stored in liquid (anaerobic) form, and suggest that manure management practices that reduce the amount of manure solids stored in liquid form could significantly reduce dairy CH4 emissions.

Short communication: Identifying challenges and opportunities for improved nutrient management through the USDA's Dairy Agroecosystem Working Group.

Nutrient management on US dairy farms must balance an array of priorities, some of which conflict. To illustrate nutrient management challenges and opportunities across the US dairy industry, the USDA Agricultural Research Service Dairy Agroecosystems Working Group (DAWG) modeled 8 confinement and 2 grazing operations in the 7 largest US dairy-producing states using the Integrated Farm System Model (IFSM). Opportunities existed across all of the dairies studied to increase on-farm feed production and lower purchased feed bills, most notably on large dairies (>1,000 cows) with the highest herd densities. Purchased feed accounted for 18 to 44% of large dairies' total operating costs compared with 7 to 14% on small dairies (<300 milk cows) due to lower stocking rates. For dairies with larger land bases, in addition to a reduction in environmental impact, financial incentives exist to promote prudent nutrient management practices by substituting manure nutrients or legume nutrients for purchased fertilizers. Environmental priorities varied regionally and were principally tied to facility management for dry-lot dairies of the semi-arid western United States (ammonia-N emissions), to manure handling and application for humid midwestern and eastern US dairies (nitrate-N leaching and P runoff), and pasture management for dairies with significant grazing components (nitrous oxide emissions). Many of the nutrient management challenges identified by DAWG are beyond slight modifications in management and require coordinated solutions to ensure an environmentally and economically sustainable US dairy industry.

Effect of Dairy Manure Storage Conditions on the Survival of E. coli O157:H7 and Listeria.

Dairy manure is regularly applied to crop fields as a solid or liquid to improve the soil nutrient status. However, pathogens may survive during manure storage and enter the environment during application. In this study, three storage practices were evaluated to understand the survival patterns of O157:H7 and spp. in dairy manure using a culture-based approach. To replicate common farm manure storage techniques, solid manure was stacked as piles with periodic turning or as static piles without turning, whereas liquid manure (feces, urine, and water) was stored as a slurry in small tanks to simulate lagoon conditions. The and levels in the manure samples were determined for 29 wk. Results showed that there was an initial reduction in bacteria levels in the first month; however, both and managed to survive in the solid manure piles for the full study period. In slurry samples, was not detected after 14 wk, but survived until the end of the experiment at relatively lower levels than in the solid manure piles. Ambient weather and pile size were identified as the main reasons for bacteria survival during the course of the experiment. The outcome of this study is important in terms of understanding pathogen survival in manure piles and slurries prior to their application to crop fields.

Methane emissions from dairy lagoons in the western United States.

Methane generation from dairy liquid storage systems is a major source of agricultural greenhouse gas emissions. However, little on-farm research has been conducted to estimate and determine the factors that may affect these emissions. Six lagoons in south-central Idaho were monitored for 1 yr, with CH4 emissions estimated by inverse dispersion modeling. Lagoon characteristics thought to contribute to CH4 emissions were also monitored over this time period. Average emissions from the lagoons ranged from 30 to 126 kg/ha per day or 22 to 517 kg/d. Whereas we found a general trend for greater emissions during the summer, when temperatures were greater, events such as pumping, rainfall, freeze or thaw of lagoon surfaces, and wind significantly increased CH4 emissions irrespective of temperature. Lagoon physicochemical characteristics, such as total solids, chemical oxygen demand, and volatile solids, were highly correlated with emission. Methane prediction models were developed using volatile solids, wind speed, air temperature, and pH as independent variables. The US Environmental Protection Agency methodology for estimating CH4 emissions from manure storage was used for comparison of on-farm CH4 emissions from 1 of the lagoon systems. The US Environmental Protection Agency method underestimated CH4 emissions by 48%. An alternative methodology, using volatile solids degradation factor, provided a more accurate estimate of annual emissions from the lagoon system and may hold promise for applicability across a range of dairy lagoon systems in the United States.

Concentrations of airborne endotoxin and microorganisms at a 10,000-cow open-freestall dairy.

Confined animal production systems produce increased bioaerosol concentrations, which are a potential respiratory health risk to individuals on site and downwind. In this longitudinal study, airborne endotoxin and microorganisms were collected during the spring, summer, and fall at a large, open-freestall dairy in southern Idaho. Compared with the background ambient atmosphere, both endotoxin and culturable heterotrophic bacteria concentrations were up to several-hundred-fold greater 50 m downwind from the facility, then decreased to near background concentrations at 200 m. However, downwind fungi concentrations were not increased above background concentrations. At 50 m downwind, the average inhalable endotoxin concentration ranged from 5 to 4,243 endotoxin units per m⁻³, whereas bacteria concentrations ranged from 10² to 104 cfu per m⁻³ of air. Although the bioaerosol concentrations did not follow a seasonal trend, they did significantly correlate with meteorological factors. Increasing temperature was found to be positively correlated with increasing bacteria (r = 0.15, P < 0.05), fungi (r = 0.14, P < 0.05), and inhalable endotoxin (r = 0.32, P < 0.001) concentrations, whereas an inverse relationship occurred between the concentration and solar radiation. The airborne concentrations at 50 m were also found to be greatest at night, which can likely be attributed to changes in animal activity and wind speed and reduced exposure of the airborne microorganisms to UV radiation.

Phosphorus utilization and characterization of excreta from swine fed diets containing a variety of cereal grains balanced for total phosphorus.

Intrinsic phytase in swine feeds may increase phytate utilization and alter the solubility of the excreted P. The objective of this experiment was to quantify changes in fecal P composition from swine fed a variety of cereal grains containing a range of phytate concentrations and endogenous phytase activities. Twenty-five crossbred barrows (89.3 +/- 6.8 kg) were fed 1 of 5 dietary treatments that were based on wheat, corn, barley, low-phytate barley, or high-fat-low-lignin oats. Experimental diets were formulated to contain 75% of the test grain and were fed for a 7-d acclimation period followed by a 3-d fecal collection period. Total-tract apparent digestibility coefficients were determined for DM, P, and phytate using an indicator method. Fecal P was characterized using solution-state (31)P nuclear magnetic resonance spectroscopy. Water-soluble P (WSP) and WSP-to-total P (TP) ratio were determined in the feces. Apparent total-tract digestibility coefficients for P and phytate ranged from 0.33 (barley) to 0.45 (low-phytate barley) and from 0.20 (corn) to 0.79 (oats), respectively. The majority of P excreted in the feces was in the form of phosphate (>47% of TP), and phytate degradation was not related to the endogenous phytase activity in the diet. There was a positive linear relationship between dietary NDF and apparent total-tract phytate digestibility (r(2) = 0.82; P = 0.03), indicating that greater dietary fiber content may enhance microbial breakdown of phytate in the hindgut. There was a negative relationship between the fecal WSP-to-TP ratio and the percentage of TP that was in the form of phytate in the feces. In summary, our results indicate that the majority of P in the feces of pigs fed diets based on cereal grains is present in the form of phosphate and relatively small amounts of phytate were contained in the excreta. The exception to this was the corn diet, for which 45% of the total fecal P was in the form of phytate. Hydrolysis of phytate in the gut did not appear to be related to the content of either phytate or phytase in the grain, but was related to dietary fiber concentration.

Phosphorus utilization and characterization of ileal digesta and excreta from broiler chickens fed diets varying in cereal grain, phosphorus level, and phytase addition.

Both intrinsic and exogenous phytase in poultry feeds can alter phytate utilization and the solubility of P excreted. This experiment determined the effects of feeding diets varying in cereal grain, P concentration and phytase addition on phytate and P utilization and P characterization of ileal digesta and excreta. Twelve treatments, consisting of diets based on corn, wheat, barley, or high fat-low lignin oat and 3 P treatments (low P with 0.30% nonphytate P; low P + 1,000 phytase units of phytase; high P with 0.45% nonphytate P), were fed to 300 broilers using a factorial design. Fresh excreta were collected at 20 and 21 d and ileal digesta was collected at 21 d. Ileal digesta and excreta were analyzed for total P, phytate P and Ca, with P composition determined by solution (31)P nuclear magnetic resonance spectroscopy. Excreta samples were also analyzed for water soluble P (WSP). Apparent ileal digestibility coefficients for phytate P and total P ranged from 0.03 to 0.42 and 0.56 to 0.71, respectively. Diets supplemented with phytase had greater phytate P hydrolysis than unsupplemented diets. Apparent total tract digestibility coefficients for phytate P and total P ranged from 0.10 to 0.73 and 0.43 to 0.61, respectively. Across cereal grains, there was almost a 3-fold increase in total tract phytate P hydrolysis with phytase supplementation. The P composition of ileal digesta was predominantly phytate P (70 to 88% of total P), whereas excreta phytate P ranged from 26 to 76% of total P. Excreta WSP ranged from 3.2 to 7.5 g kg(-1) and was least for the barley diets. There was a 25% reduction in excreta WSP from the high P to the low P + phytase diets and a 37% reduction from the high P to the low P diets. As cereal grain had little influence on phytate digestibility, it is unlikely that intrinsic phytase in grain has much influence on phytate utilization by poultry. Both total P and WSP in excreta were reduced by the low P diet and the low P + phytase diet, irrespective of cereal grain, which reduces the risk of P transfer to water bodies when excreta are applied to land as fertilizer.

Nutrient excretion, phosphorus characterization, and phosphorus solubility in excreta from broiler chicks fed diets containing graded levels of wheat distillers grains with solubles.

Increased interest in ethanol production in North America has led to increased production of distillers dried grains with solubles (DDGS), the majority of which are fed to livestock. To determine the impact of including wheat DDGS in broiler diets on nutrient excretion and P characterization and solubility, 125 one-day-old male broiler chicks were fed wheat- and soybean meal-based diets containing 0, 5, 10, 15, or 20% wheat DDGS. There were 5 replicate pens per treatment, with 5 birds per pen arranged in a randomized block design. Apparent retention of both N and P were determined by using the indicator method. Nutrients excreted per kilogram of DM intake were also calculated. Characterization of excreta P was determined by (31)P-solution nuclear magnetic resonance spectroscopy, and water-soluble P (WSP) was determined by extraction of excreta with deionized water. The apparent retention of both N (P < 0.001) and P (P < 0.008) decreased linearly with increasing inclusion rates of DDGS from 0 to 20%. The nutrient output per kilogram of DM intake increased linearly with increased DDGS inclusion rate for N (P < 0.04), P (P < 0.0001), and WSP (P < 0.0003). As the inclusion rate of DDGS increased, the P concentration in excreta increased (P < 0.008), whereas excreta phytate P concentrations decreased (P < 0.01), which led to an increase in WSP and the fraction of total P that was soluble. Because the inclusion of DDGS in poultry diets increased N and P output, as well as the solubility of P excreted, care should be taken when including high levels of DDGS in poultry diets, because increases in N and P excretion are a concern from an environmental standpoint.

Evaluation of phosphorus characterization in broiler ileal digesta, manure, and litter samples: (31)P-NMR vs. HPLC.

Using 31-phosphorus nuclear magnetic resonance spectroscopy ((31)P-NMR) to characterize phosphorus (P) in animal manures and litter has become a popular technique in the area of nutrient management. To date, there has been no published work evaluating P quantification in manure/litter samples with (31)P-NMR compared to other accepted methods such as high performance liquid chromatography (HPLC). To evaluate the use of (31)P-NMR to quantify myo-inositol hexakisphosphate (phytate) in ileal digesta, manure, and litter from broilers, we compared results obtained from both (31)P-NMR and a more traditional HPLC method. The quantification of phytate in all samples was very consistent between the two methods, with linear regressions having slopes ranging from 0.94 to 1.07 and r(2) values of 0.84 to 0.98. We compared the concentration of total monoester P determined with (31)P-NMR with the total inositol P content determined with HPLC and found a strong linear relationship between the two measurements having slopes ranging from 0.91 to 1.08 and r(2) values of 0.73 to 0.95. This suggests that (31)P-NMR is a very reliable method for quantifying P compounds in manure/litter samples.

Interaction of calcium and phytate in broiler diets. 2. Effects on total and soluble phosphorus excretion.

Dietary Ca has been reported to influence the amount of phytate excreted from broilers and affect the solubility of P in excreta. To address the effects of dietary Ca and phytate on P excretion, 12 dietary treatments were fed to broilers from 16 to 21 d of age. Treatments consisted of 3 levels of phytate P (0.10, 0.24, and 0.28%) and 4 levels of Ca (0.47, 0.70, 0.93, and 1.16%) in a randomized complete block design. Feed phytate concentrations were varied by formulating diets with 3 different soybean meals (SBM): a low-phytate SBM, a commercial SBM, and a high phytate Prolina SBM having phytate P concentrations of 0.15 to 0.51%. Fresh excreta was collected from cages during 2 separate 24-h periods; collection I commenced after the start of dietary treatments (16 to 17 d) and collection II followed a 3-d adaptation period (19 to 20 d). Ileal samples were also collected at 21 d. Excreta samples were analyzed for total P, water soluble P (WSP), and phytate P, whereas ileal samples were analyzed for total P and phytate P. Results indicated that excreta total P could be reduced by up to 63% and WSP by up to 66% with dietary inclusion of low-phytate SBM. There was a significant effect of dietary Ca on both the excreta WSP and the ratio of WSP:total P. As dietary Ca increased, the excreta WSP and WSP:total P decreased, with the effects being more pronounced following a dietary adaptation period. There was a linear relationship between the slope of the response in WSP to dietary Ca and feed phytate content for excreta from collection II (r(2) = 0.99). There was also a negative correlation between excreta phytate concentration and excreta WSP during both excreta collections. The response in WSP to dietary manipulation was important from an environmental perspective because WSP in excreta has been related to potential for off-site P losses following land application.

Interaction of calcium and phytate in broiler diets. 1. Effects on apparent prececal digestibility and retention of phosphorus.

Phytate P utilization from soybean meal (SBM) included in broiler diets has been shown to be poor and highly dependent on dietary Ca intake. However, the effect of Ca on P utilization and on the optimal ratio of Ca to nonphytate P (Ca:NPP) when diets contained varying levels of phytate has not been clearly shown and was the objective of this research. A factorial treatment structure was used with 4 dietary Ca levels from 0.47 to 1.16% and 3 levels of phytate P (0.28, 0.24, and 0.10%). Varying dietary phytate P levels were obtained by utilizing SBM produced from 3 varieties of soybeans with different phytate P concentrations. Ross 508 broiler chicks were fed 1 of 12 diets from 16 to 21 d of age. Excreta were collected from 16 to 17 d and from 19 to 20 d of age and ileal digesta was collected at 21 d of age. Apparent prececal P digestibility decreased when dietary Ca concentration increased and was higher when diets contained low-phytate SBM. The apparent digestibility of Ca and percentage of phytate P hydrolysis at the distal ileum were not reduced when dietary phytate P concentration increased. Including low-phytate SBM in diets reduced total P output in the excreta by 49% compared with conventional SBM. The optimum ratio of Ca:NPP that resulted in the highest P retention and lowest P excretion was 2.53:1, 2.40:1, and 2.34:1 for diets with 0.28, 0.24, and 0.10% phytate P. These data suggested that increased dietary Ca reduced the extent of phytate P hydrolysis and P digestibility and that the optimum Ca:NPP ratio at which P retention was maximized was reduced when diets contained less phytate P.

What aspect of dietary modification in broilers controls litter water-soluble phosphorus: dietary phosphorus, phytase, or calcium?

Environmental concerns about phosphorus (P) losses from animal agriculture have led to interest in dietary strategies to reduce the concentration and solubility of P in manures and litters. To address the effects of dietary available phosphorus (AvP), calcium (Ca), and phytase on P excretion in broilers, 18 dietary treatments were applied in a randomized complete block design to each of four replicate pens of 28 broilers from 18 to 42 d of age. Treatments consisted of three levels of AvP (3.5, 3.0, and 2.5 g kg(-1)) combined with three levels of Ca (8.0, 6.9, and 5.7 g kg(-1)) and two levels of phytase (0 and 600 phytase units [FTU]). Phytase was added at the expense of 1.0 g kg(-1) P from dicalcium phosphate. Fresh litter was collected from pens when the broilers were 41 d of age and analyzed for total P, soluble P, and phytate P as well as P composition by (31)P nuclear magnetic resonance (NMR) spectroscopy. Results indicated that the inclusion of phytase at the expense of inorganic P or reductions in AvP decreased litter total P by 28 to 43%. Litter water-soluble P (WSP) decreased by up to 73% with an increasing dietary Ca/AvP ratio, irrespective of phytase addition. The ratio of WSP/total P in litter decreased as the dietary Ca/AvP ratio increased and was greater in the phytase-amended diets. This study indicated that while feeding reduced AvP diets with phytase decreased litter total P, the ratio of Ca/AvP in the diet was primarily responsible for effects on WSP. This is important from an environmental perspective as the amount of WSP in litter could be related to potential for off-site P losses following land application of litter.

Nutrient losses from manure and fertilizer applications as impacted by time to first runoff event.

Nutrient losses to surface waters following fertilization contribute to eutrophication. This study was conducted to compare the impacts of fertilization with inorganic fertilizer, swine (Sus scrofa domesticus) manure or poultry (Gallus domesticus) litter on runoff water quality, and how the duration between application and the first runoff event affects resulting water quality. Fertilizers were applied at 35 kg P ha-1, and the duration between application and the first runoff event varied between 1 and 29 days. Swine manure was the greatest risk to water quality 1 day after fertilization due to elevated phosphorus (8.4 mg P L-1) and ammonium (10.3 mg NH4-N L-1) concentrations; however, this risk decreased rapidly. Phosphorus concentrations were 2.6 mg L-1 29 days after fertilization with inorganic fertilizer. This research demonstrates that manures might be more environmentally sustainable than inorganic fertilizers, provided runoff events do not occur soon after application.

Determination of phosphorus source coefficients for organic phosphorus sources: laboratory studies.

Phosphorus losses in runoff from application of manures and biosolids to agricultural land are implicated in the degradation of water quality in the Chesapeake and Delaware Inland Bays. We conducted an incubation study to determine the relative P solubility and bioavailability, referred to as P source coefficients (PSCs), for organic P sources, which are typically land-applied in the Mid-Atlantic USA. Nine organic and one inorganic (KH2PO4) P amendments were applied to an Evesboro loamy sand (mesic, coated Typic Quartzipsamments) at a rate of 60 mg P kg(-1) and incubated for 8 wk with subsamples analyzed at 2 and 8 wk. There was an increase in Mehlich-3 P (M3-P), water-soluble P (WS-P), iron-oxide strip extractable P (FeO-P), and Mehlich-3 P saturation ratio (M3-PSR) with P additions, which varied by P source. The trend of relative extractable WS-P, FeO-P, and M3-P generally followed the pattern: inorganic P > liquid and deep pit manures > manures and biosolids treated with metal salts or composted. We found significant differences in the availability of P from varying organic P sources. The use of PSCs may be beneficial when determining the risk of P losses from land application of manures and other organic P sources and could be used in risk assessments such as a P site index. These PSCs may also be useful for determining P application rates when organic P sources are applied to P deficient soils for use as a fertilizer source.