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1.
Small ; : e2311658, 2024 May 11.
Artigo em Inglês | MEDLINE | ID: mdl-38733228

RESUMO

Under damp or aquatic conditions, the corrosion products deposited on micro-cracks/pore sites bring about the failure of intrinsically healable organic coatings. Inspired by mussels, a composite coating of poly (methyl methacrylate-co-butyl acylate-co-dopamine acrylamide)/phenylalanine-functionalized boron nitride (PMBD/BN-Phe) is successfully prepared on the reinforcing steel, which exhibits excellent anti-corrosion and underwater self-healing capabilities. The self-healing property of PMBD is derived from the synergistic effect of hydrogen bonding and metal-ligand coordination bonding, and thereby the continuous generation of corrosion products can be significantly suppressed through in situ capture of cations by the catechol group. Furthermore, the corrosion protection ability can be remarkably improved by the labyrinth effect of BN and the inhibition role of Phe, and the desired interfacial compatibility can be formed by the hydrogen bonds between BN-Phe and PMBD matrix. The corrosion current density (icorr) of PMBD/BN-Phe coating is determined as 7.95 × 10-11 A cm-2. The low-frequency impedance modulus (|Z|f  =  0.0 1 Hz is remained at 3.47 × 109 Ω cm2, indicating an ultra-high self-healing efficiency (≈89.5%). It is anticipated to provide a unique strategy for development of an underwater self-healing coating and robust durability for application in anti-corrosion engineering of marine buildings.

2.
Mol Ther ; 2024 May 10.
Artigo em Inglês | MEDLINE | ID: mdl-38734901

RESUMO

HIV-1 infection remains a public health problem with no cure. Although antiretroviral therapy (ART) is effective for suppressing HIV-1 replication, it requires lifelong drug administration due to a stable reservoir of latent proviruses and may cause serious side effect and drive the emergence of drug resistant HIV-1 variants. Gene therapy represents an alternative approach to overcome the limitations of conventional treatments against HIV-1 infection. In this study, we constructed and investigated the antiviral effects of an HIV-1 Tat-dependent conditionally replicating adenovirus, which selectively replicates and expresses the diphtheria toxin A chain (Tat-CRAds-DTA) in HIV-1 infected cells both in vitro and in vivo. We found that Tat-CRAds-DTA could specifically induce cell death and inhibit virus replication in HIV-1 infected cells mediated by adenovirus proliferation and DTA expression. A low titer of progeny Tat-CRAds-DTA was also detected in HIV-1 infected cells. In addition, Tat-CRAds-DTA showed no apparent cytotoxicity to HIV-1 negative cells and demonstrated significant therapeutic efficacy against HIV-1 infection in a humanized mouse model. Findings in this study highlight the potential of Tat-CRAds-DTA as a new gene therapy for the treatment of HIV-1 infection.

3.
Cancer Nurs ; 2024 May 05.
Artigo em Inglês | MEDLINE | ID: mdl-38704740

RESUMO

BACKGROUND: Patients with breast cancer have an estimated 14% to 60% risk of developing lymphedema after treatment. Self-management behavior strategies regarding lymphedema are essential in preventing and alleviating the severity of lymphedema. OBJECTIVE: The aim of this study was to evaluate qualitative research evidence on the potential influencing factors for self-management behaviors of lymphedema in patients with breast cancer. METHODS: A systematic search of 10 electronic databases was conducted to identify qualitative studies on patient experience of lymphedema self-management. The following databases were included and appraised using the Joanna Briggs Institute Critical Appraisal Checklist: Cochrane Library, PubMed, EMBASE, Web of Science, PsycINFO, Scopus, Cumulative Index to Nursing and Allied Health Literature, China National Knowledge Infrastructure, Wanfang Med Online, and Chinese Biomedical Database. RESULTS: The literature search yielded 5313 studies, of which only 22 qualitative studies fulfilled the eligibility criteria. Five synthesized findings were derived encompassing personal characteristics, personal knowledge and experience, personal health beliefs, self-regulation skills and abilities, and social influences and support. CONCLUSIONS: Patients with breast cancer are confronted with many challenges when performing self-management of lymphedema. Therefore, it is important to recognize potential facilitators and barriers to further offer practical recommendations that promote self-management activities for lymphedema. IMPLICATIONS FOR PRACTICE: Healthcare professionals should receive consistent training on lymphedema management. On the basis of individual patient characteristics, tailored education and support should be provided, including transforming irrational beliefs, and improving related knowledge and skills, with the aim to promote self-management behaviors with respect to lymphedema.

4.
World J Microbiol Biotechnol ; 40(6): 195, 2024 May 09.
Artigo em Inglês | MEDLINE | ID: mdl-38722426

RESUMO

Bacillus subtilis is regarded as a promising microbial expression system in bioengineering due to its high stress resistance, nontoxic, low codon preference and grow fast. The strain has a relatively efficient expression system, as it has at least three protein secretion pathways and abundant molecular chaperones, which guarantee its expression ability and compatibility. Currently, many proteins are expressed in Bacillus subtilis, and their application prospects are broad. Although Bacillus subtilis has great advantages compared with other prokaryotes related to protein expression and secretion, it still faces deficiencies, such as low wild-type expression, low product activity, and easy gene loss, which limit its large-scale application. Over the years, many researchers have achieved abundant results in the modification of Bacillus subtilis expression systems, especially the optimization of promoters, expression vectors, signal peptides, transport pathways and molecular chaperones. An optimal vector with a suitable promoter strength and other regulatory elements could increase protein synthesis and secretion, increasing industrial profits. This review highlights the research status of optimization strategies related to the expression system of Bacillus subtilis. Moreover, research progress on its application as a food-grade expression system is also presented, along with some future modification and application directions.


Assuntos
Bacillus subtilis , Proteínas de Bactérias , Regiões Promotoras Genéticas , Bacillus subtilis/genética , Bacillus subtilis/metabolismo , Proteínas de Bactérias/genética , Proteínas de Bactérias/metabolismo , Regulação Bacteriana da Expressão Gênica , Vetores Genéticos , Chaperonas Moleculares/metabolismo , Chaperonas Moleculares/genética , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo , Sinais Direcionadores de Proteínas/genética
5.
Artigo em Inglês | MEDLINE | ID: mdl-38716540

RESUMO

Bone cancer pain (BCP), due to cancer bone metastasis and bone destruction, is a common symptom of tumors, including breast, prostate, and lung tumors. Patients often experience severe pain without effective treatment. Here, using a mouse model of bone cancer, we report that MOTS-c, a novel mitochondrial-derived peptide, confers remarkable protection against cancer pain and bone destruction. Briefly, we find that the plasma level of endogenous MOTS-c is significantly lower in the BCP group than in the sham group. Accordingly, intraperitoneal administration of MOTS-c robustly attenuates bone cancer-induced pain. These effects are blocked by compound C, an AMPK inhibitor. Furthermore, MOTS-c treatment significantly enhances AMPKα 1/2 phosphorylation. Interestingly, mechanical studies indicate that at the spinal cord level, MOTS-c relieves pain by restoring mitochondrial biogenesis, suppressing microglial activation, and decreasing the production of inflammatory factors, which directly contribute to neuronal modulation. However, in the periphery, MOTS-c protects against local bone destruction by modulating osteoclast and immune cell function in the tumor microenvironment, providing long-term relief from cancer pain. Additionally, we find that chronic administration of MOTS-c has little effect on liver, renal, lipid or cardiac function in mice. In conclusion, MOTS-c improves BCP through peripheral and central synergistic effects on nociceptors, immune cells, and osteoclasts, providing a pharmacological and biological rationale for the development of mitochondrial peptide-based therapeutic agents for cancer-induced pain.

6.
Viral Immunol ; 37(4): 177-185, 2024 05.
Artigo em Inglês | MEDLINE | ID: mdl-38625025

RESUMO

Viral infections are major causes of mortality in solid-organ and hematopoietic stem cell transplant recipients. Epstein-Barr virus (EBV) and Parvovirus B19 (B19V) are among the common viral infections after transplantation and were recommended for increased screening in relevant guidelines. Therefore, the development of rapid, specific, and cost-effective diagnostic methods for EBV and B19V is of paramount importance. We applied Fluorescence of Loop Primer Upon Self-Dequenching Loop-mediated Isothermal Amplification (FLOS-LAMP) for the first time to develop a novel multiplex assay for the detection of EBV and B19V; the fluorophore attached to the probe are self-quenched in unbound state. After binding to the dumbbell-shaped DNA target, the fluorophore is dequenched, resulting in fluorescence development. The novel multiplex FLOS-LAMP assay was optimized by testing various ratios of primer sets. This novel assay, with great specificity, did not cross-react with the common virus. For the detection of EBV and B19V, the limits of detection could reach 969 and 798 copies/µL, respectively, and the assay could be completed within 25 min. Applying this novel assay to detect 200 clinical transplant individuals indicated that the novel assay had high specificity and good sensitivity. We developed multiplex FLOS-LAMP assay for the detection of EBV and B19V, which has the potential to become an important tool for clinical transplant patient screening.


Assuntos
Infecções por Vírus Epstein-Barr , Herpesvirus Humano 4 , Técnicas de Diagnóstico Molecular , Técnicas de Amplificação de Ácido Nucleico , Parvovirus B19 Humano , Sensibilidade e Especificidade , Humanos , Herpesvirus Humano 4/genética , Herpesvirus Humano 4/isolamento & purificação , Técnicas de Amplificação de Ácido Nucleico/métodos , Parvovirus B19 Humano/genética , Parvovirus B19 Humano/isolamento & purificação , Infecções por Vírus Epstein-Barr/diagnóstico , Infecções por Vírus Epstein-Barr/virologia , Técnicas de Diagnóstico Molecular/métodos , Fluorescência , Primers do DNA/genética , Transplantados , Infecções por Parvoviridae/diagnóstico , Infecções por Parvoviridae/virologia , DNA Viral/genética , Transplante de Órgãos
7.
Int Immunopharmacol ; 133: 112070, 2024 May 30.
Artigo em Inglês | MEDLINE | ID: mdl-38640716

RESUMO

Skin, the largest organ of body, is a highly immunogenic tissue with a diverse collection of immune cells. Highly polymorphic human leukocyte antigen (HLA) molecules have a central role in coordinating immune responses as recognition molecules. Nevertheless, HLA gene expression patterns among diverse cell types within a specific organ, like the skin, have yet to be thoroughly investigated, with stromal cells attracting much less attention than immune cells. To illustrate HLA expression profiles across different cell types in the skin, we performed single-cell RNA sequencing (scRNA-seq) analyses on skin datasets, covering adult and fetal skin, and hair follicles as the skin appendages. We revealed the variation in HLA expression between different skin populations by examining normal adult skin datasets. Moreover, we evaluated the potential immunogenicity of multiple skin populations based on the expression of classical HLA class I genes, which were well represented in all cell types. Furthermore, we generated scRNA-seq data of developing skin from fetuses of 15 post conception weeks (PCW), 17 PCW, and 22 PCW, delineating the dynamic expression of HLA genes with cell type-dependent variation among various cell types during development. Notably, the pseudotime trajectory analysis unraveled the significant variance in HLA genes during the evolution of vascular endothelial cells. Moreover, we uncovered the immune-privileged properties of hair follicles at single-cell resolution. Our study presents a comprehensive single-cell transcriptomic landscape of HLA genes in the skin, which provides new insights into variation in HLA molecules and offers a clue for allogeneic skin transplantation.


Assuntos
Perfilação da Expressão Gênica , Antígenos HLA , Análise de Célula Única , Pele , Transcriptoma , Humanos , Pele/imunologia , Pele/metabolismo , Antígenos HLA/genética , Antígenos HLA/imunologia , Folículo Piloso/imunologia , Folículo Piloso/metabolismo , Feto/imunologia , Adulto , Privilégio Imunológico
8.
Nat Commun ; 15(1): 3124, 2024 Apr 10.
Artigo em Inglês | MEDLINE | ID: mdl-38600164

RESUMO

Crop wild relatives offer natural variations of disease resistance for crop improvement. Here, we report the isolation of broad-spectrum powdery mildew resistance gene Pm36, originated from wild emmer wheat, that encodes a tandem kinase with a transmembrane domain (WTK7-TM) through the combination of map-based cloning, PacBio SMRT long-read genome sequencing, mutagenesis, and transformation. Mutagenesis assay reveals that the two kinase domains and the transmembrane domain of WTK7-TM are critical for the powdery mildew resistance function. Consistently, in vitro phosphorylation assay shows that two kinase domains are indispensable for the kinase activity of WTK7-TM. Haplotype analysis uncovers that Pm36 is an orphan gene only present in a few wild emmer wheat, indicating its single ancient origin and potential contribution to the current wheat gene pool. Overall, our findings not only provide a powdery mildew resistance gene with great potential in wheat breeding but also sheds light into the mechanism underlying broad-spectrum resistance.


Assuntos
Ascomicetos , Triticum , Triticum/genética , Melhoramento Vegetal , Genes de Plantas , Ascomicetos/genética , Mapeamento Cromossômico , Resistência à Doença/genética , Doenças das Plantas/genética
9.
Tob Induc Dis ; 222024.
Artigo em Inglês | MEDLINE | ID: mdl-38686042

RESUMO

INTRODUCTION: This study aimed to investigate the effects of nicotine on the activation of pancreatic stellate cells (PSCs) and pancreatic fibrosis in chronic pancreatitis (CP), along with its underlying molecular mechanisms. METHODS: This was an in vivo and in vitro study. In vitro, PSCs were cultured to study the effects of nicotine on their activation and oxidative stress. Transcriptome sequencing was performed to identify potential signaling pathways involved in nicotine action. And the impact of nicotine on mitochondrial Ca2+ levels and Ca2+ transport-related proteins in PSCs was analyzed. The changes in nicotine effects were observed after the knockdown of the mitochondrial calcium uniporter (MCU) in PSCs. In vivo experiments were conducted using a mouse model of CP to assess the effects of nicotine on pancreatic fibrosis and oxidative stress in mice. The alterations in nicotine effects were observed after treatment with the MCU inhibitor Ru360. RESULTS: In vitro experiments demonstrated that nicotine promoted PSCs activation, characterized by increased cell proliferation, elevated α-SMA and collagen expression. Nicotine also increased the production of reactive oxygen species (ROS) and cellular malondialdehyde (MDA), exacerbating oxidative stress damage. Transcriptome sequencing revealed that nicotine may exert its effects through the calcium signaling pathway, and it was verified that nicotine elevated mitochondrial Ca2+ levels and upregulated MCU expression. Knockdown of MCU reversed the effects of nicotine on mitochondrial calcium homeostasis, improved mitochondrial oxidative stress damage and structural dysfunction, thereby alleviating the activation of PSCs. In vivo validation experiments showed that nicotine significantly aggravated pancreatic fibrosis in CP mice, promoted PSCs activation, exacerbated pancreatic tissue oxidative stress, and increased MCU expression. However, treatment with Ru360 significantly mitigated these effects. CONCLUSIONS: This study confirms that nicotine upregulates the expression of MCU, leading to mitochondrial calcium overload and exacerbating oxidative stress in PSCs, and ultimately promoting PSCs activation and exacerbating pancreatic fibrosis in CP.

10.
J Environ Manage ; 358: 120870, 2024 May.
Artigo em Inglês | MEDLINE | ID: mdl-38640757

RESUMO

Bacterium with high Cr(VI) detoxification capability belonged to the genus Bacillus have been largely explored, yet their reduction strategies are still in debate. Cr(VI) removal performance and mechanism of Bacillus sp. HL1 isolated from tailings a site was comprehensively investigated in this study. Approximately 88.31% of 100 mg/L Cr(VI) was continuously removed within 72 h, while it could resist up to 300 mg/L Cr(VI). Metal ions Mn2+ and Cu2+ could effectively improve the Cr(VI) removal performance to 14.41% and 3.41% under the optimal conditions, respectively. Cr(VI) removal performances by subcellular extracts showed that nearly 45.28% of 100 mg/L extracellular Cr(VI) was efficaciously reduced to Cr(III), while only 14.27%, 6.40%, and 2.73% of the cell-free extract, resting cells, and cell debris were reduced, respectively. This suggested that extracellular bioreduction was the primary Cr(VI) detoxification strategy despite a small part of Cr(VI) reduction took place intracellularly. In particular, the reduction products of the intracellular and extracellular compounds significantly differed, with organo-Cr(III) complex outside the cell and crystalline Cr(III) precipitate inside. Such observation was also evidenced by the intracellular black precipitate observed in the TEM image. XRD, XPS, and EPR analysis showed different Cr(III) compositions of intracellular and extracellular products. This study deepens our insights into the different fates of microorganisms that reduce Cr(VI) intracellularly and extracellularly.


Assuntos
Bacillus , Biodegradação Ambiental , Cromo , Bacillus/metabolismo , Cromo/metabolismo , Oxirredução
11.
Diagn Microbiol Infect Dis ; 109(1): 116234, 2024 May.
Artigo em Inglês | MEDLINE | ID: mdl-38432126

RESUMO

A multiplex real-time PCR has been developed to simultaneously detect transfusion-transmissible pathogens cytomegalovirus, Epstein-Barr virus and herpes simplex virus, as well as to provide sample quality testing, for the conserved regions of the cytomegalovirus UL123 gene, the Epstein-Barr virus BKRF1 gene, and the herpes simplex virus 1/2 UL30 gene, tested on 500 blood donors and 320 transfusion recipients. The laboratory sensitivities for all 3 pathogens were 100 copies/µL. Compared to the commercial real-time PCR reference kit, the multiplex real-time PCR assay for the detection of CMV, EBV and HSV presented 100% consistency. In 820 whole blood samples, the multiplex real-time PCR assay identified 34 (4.15%) positive for CMV DNA, 15 (1.83%) positive for EBV DNA, and 6 (0.73%) positive for HSV DNA. For blood transfusions in high-risk groups, whole blood herpes virus test should be included in the spectrum of pathogen testing for blood donors and recipients.


Assuntos
Infecções por Citomegalovirus , Infecções por Vírus Epstein-Barr , Herpesvirus Humano 1 , Humanos , Herpesvirus Humano 4/genética , Citomegalovirus/genética , Reação em Cadeia da Polimerase em Tempo Real , Herpesvirus Humano 1/genética , Herpesvirus Humano 2/genética , Infecções por Citomegalovirus/diagnóstico , DNA Viral/genética , DNA Viral/análise
12.
Sci Adv ; 10(12): eadk9484, 2024 Mar 22.
Artigo em Inglês | MEDLINE | ID: mdl-38507477

RESUMO

Epileptogenesis, arising from alterations in synaptic strength, shares mechanistic and phenotypic parallels with memory formation. However, direct evidence supporting the existence of seizure memory remains scarce. Leveraging a conditioned seizure memory (CSM) paradigm, we found that CSM enabled the environmental cue to trigger seizure repetitively, and activating cue-responding engram cells could generate CSM artificially. Moreover, cue exposure initiated an analogous process of memory reconsolidation driven by mammalian target of rapamycin-brain-derived neurotrophic factor signaling. Pharmacological targeting of the mammalian target of rapamycin pathway within a limited time window reduced seizures in animals and interictal epileptiform discharges in patients with refractory seizures. Our findings reveal a causal link between seizure memory engrams and seizures, which leads us to a deeper understanding of epileptogenesis and points to a promising direction for epilepsy treatment.


Assuntos
Eletroencefalografia , Epilepsia , Animais , Humanos , Convulsões/etiologia , Sirolimo , Serina-Treonina Quinases TOR , Mamíferos
13.
Gut Microbes ; 16(1): 2329147, 2024.
Artigo em Inglês | MEDLINE | ID: mdl-38528729

RESUMO

BACKGROUND: Inflammatory bowel disease (IBD) is characterized by immune-mediated, chronic inflammation of the intestinal tract. The occurrence of IBD is driven by the complex interactions of multiple factors. The objective of this study was to evaluate the therapeutic effects of IAA in colitis. METHOD: C57/BL6 mice were administered 2.5% DSS in drinking water to induce colitis. IAA, Bifidobacterium pseudolongum, and R-equol were administered by oral gavage and fed a regular diet. The Disease Activity Index was used to evaluate disease activity. The degree of colitis was evaluated using histological morphology, RNA, and inflammation marker proteins. CD45+ CD4+ FOXP3+ Treg and CD45+ CD4+ IL17A+ Th17 cells were detected by flow cytometry. Analysis of the gut microbiome in fecal content was performed using 16S rRNA gene sequencing. Gut microbiome metabolites were analyzed using Untargeted Metabolomics. RESULT: In our study, we found IAA alleviates DSS-induced colitis in mice by altering the gut microbiome. The abundance of Bifidobacterium pseudolongum significantly increased in the IAA treatment group. Bifidobacterium pseudolongum ATCC25526 alleviates DSS-induced colitis by increasing the ratio of Foxp3+T cells in colon tissue. R-equol alleviates DSS-induced colitis by increasing Foxp3+T cells, which may be the mechanism by which ATCC25526 alleviates DSS-induced colitis in mice. CONCLUSION: Our study demonstrates that IAA, an indole derivative, alleviates DSS-induced colitis by promoting the production of Equol from Bifidobacterium pseudolongum, which provides new insights into gut homeostasis regulated by indole metabolites other than the classic AHR pathway.


Assuntos
Bifidobacterium , Colite , Microbioma Gastrointestinal , Doenças Inflamatórias Intestinais , Camundongos , Animais , Equol/metabolismo , Equol/farmacologia , Equol/uso terapêutico , RNA Ribossômico 16S/genética , Colite/induzido quimicamente , Colite/tratamento farmacológico , Colite/metabolismo , Ácidos Indolacéticos/metabolismo , Doenças Inflamatórias Intestinais/patologia , Inflamação/patologia , Fatores de Transcrição Forkhead/genética , Fatores de Transcrição Forkhead/metabolismo , Fatores de Transcrição Forkhead/farmacologia , Sulfato de Dextrana/toxicidade , Camundongos Endogâmicos C57BL , Modelos Animais de Doenças , Colo/metabolismo
14.
ACS Appl Mater Interfaces ; 16(12): 15308-15321, 2024 Mar 27.
Artigo em Inglês | MEDLINE | ID: mdl-38477047

RESUMO

Colloidal photonic composites (CPCs) are unique optical materials that combine flexible and responsive polymers with colloidal photonic crystals, and they have promising applications in colorful displays, optical anticounterfeiting, and visual sensors. However, conventional self-assembly strategies for constructing CPCs via solvent evaporation have faced limitations due to the meticulous regulation required during the evaporation process and typically long preparation durations. Here, we present an external force method to achieve a long-range ordered arrangement in CPCs by hot-pressing poly(2-[[(butylamino)carbonyl]oxy]ethyl acrylate (PBCOE)) brush-grafted silica colloidal particles (SiO2-g-PBCOE). We show that the hot-pressing conditions (i.e., temperature and pressure) and the silica volume fraction (φsilica) of the SiO2-g-PBCOE colloidal particles play crucial roles in determining their ordering and optical properties. By optimization of the hot-pressing temperature up to 100 °C and pressure of 5 MPa, a long-range ordered arrangement of SiO2-g-PBCOE colloidal particles with a φsilica of 20.3% can be achieved. For the effect of structural features, our findings reveal that SiO2-g-PBCOE colloidal particles featuring a higher φsilica are more prone to obtain a long-range ordered arrangement compared to a lower φsilica under hot-pressing conditions at relatively low temperature and pressure (50 °C and 5 MPa), which is mainly attributed to the chain entanglement and hydrogen bonding interactions induced by grafted longer polymer brushes, leading to additional energy inputs and weakening the ordering. Significantly, the critical φsilica (φc) of SiO2-g-PBCOE colloidal particles is discerned, strongly influencing the optical properties of the hot-pressed films. Specifically, a hot-pressed SiO2-g-PBCOE film with a critical φsilica of 29.3% displays enhanced optical properties characterized by intensified reflection peaks, narrowed full width at half-maximum (FWHM), and brilliant structural colors. Notably, in this work, we reveal the mechanism of hot-pressing-driven core-shell colloidal particle ordering and the key factors affecting the ordering of colloidal particles, i.e., chain entanglement and hydrogen-bonding interactions, which play a crucial role in obtaining CPCs with controllable structures. Moreover, angle-dependent structural color is observed in the hot-pressed SiO2-g-PBCOE film with a φsilica content of 29.3% due to the unique attributes of the highly ordered arrangement, while the films exhibit mechanochromic properties due to chain entanglement and hydrogen bonding interactions. This work provides valuable insights into the rapid construction of highly ordered CPCs and establishes a solid foundation for external force-assisted ordering of colloidal particles.

15.
Mol Plant Pathol ; 25(3): e13446, 2024 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-38502176

RESUMO

Animal studies have shown that virus infection causes changes in host chromatin accessibility, but little is known about changes in chromatin accessibility of plants infected by viruses and its potential impact. Here, rice infected by rice stripe virus (RSV) was used to investigate virus-induced changes in chromatin accessibility. Our analysis identified a total of 6462 open- and 3587 closed-differentially accessible chromatin regions (DACRs) in rice under RSV infection by ATAC-seq. Additionally, by integrating ATAC-seq and RNA-seq, 349 up-regulated genes in open-DACRs and 126 down-regulated genes in closed-DACRs were identified, of which 34 transcription factors (TFs) were further identified by search of upstream motifs. Transcription levels of eight of these TFs were validated by reverse transcription-PCR. Importantly, four of these TFs (OsWRKY77, OsWRKY28, OsZFP12 and OsERF91) interacted with RSV proteins and are therefore predicted to play important roles in RSV infection. This is the first application of ATAC-seq and RNA-seq techniques to analyse changes in rice chromatin accessibility caused by RSV infection. Integrating ATAC-seq and RNA-seq provides a new approach to select candidate TFs in response to virus infection.


Assuntos
Oryza , Infecções por Vírus Respiratório Sincicial , Tenuivirus , Animais , Fatores de Transcrição/genética , Oryza/genética , Tenuivirus/genética , Sequenciamento de Cromatina por Imunoprecipitação , RNA-Seq , Cromatina , Análise de Dados
16.
Quant Imaging Med Surg ; 14(3): 2370-2390, 2024 Mar 15.
Artigo em Inglês | MEDLINE | ID: mdl-38545083

RESUMO

Background: Dual-energy computed tomography (CT) can provide a range of image information beyond conventional CT through virtual monoenergetic images (VMIs). The purpose of this study was to investigate the impact of material decomposition in detector-based spectral CT on radiomics features and effectiveness of using deep learning-based image synthesis to improve the reproducibility of radiomics features. Methods: In this paper, spectral CT image data from 45 esophageal cancer patients were collected for investigation retrospectively. First, we computed the correlation coefficient of radiomics features between conventional kilovoltage peak (kVp) CT images and VMI. Then, a wavelet loss-enhanced CycleGAN (WLL-CycleGAN) with paired loss terms was developed to synthesize virtual monoenergetic CT images from the corresponding conventional single-energy CT (SECT) images for improving radiomics reproducibility. Finally, the radiomic features in 6 different categories, including gray-level co-occurrence matrix (GLCM), gray-level difference matrix (GLDM), gray-level run-length matrix (GLRLM), gray-level size-zone matrix (GLSZM), neighborhood gray-tone difference matrix (NGTDM), and wavelet, were extracted from the gross tumor volumes from conventional single energy CT, synthetic virtual monoenergetic CT images, and virtual monoenergetic CT images. Comparison between errors in the VMI and synthetic VMI (sVMI) suggested that the performance of our proposed deep learning method improved the radiomic feature accuracy. Results: Material decomposition of dual-layer dual-energy CT (DECT) can substantially influence the reproducibility of the radiomic features, and the degree of impact is feature dependent. The average reduction of radiomics errors for 15 patients in testing sets was 96.9% for first-order, 12.1% for GLCM, 12.9% for GLDM, 15.7% for GLRLM, 50.3% for GLSZM, 53.4% for NGTDM, and 6% for wavelet features. Conclusions: The work revealed that material decomposition has a significant effect on the radiomic feature values. The deep learning-based method reduced the influence of material decomposition in VMIs and might improve the robustness and reproducibility of radiomic features in esophageal cancer. Quantitative results demonstrated that our proposed wavelet loss-enhanced paired CycleGAN outperforms the original CycleGAN.

17.
ACS Appl Mater Interfaces ; 16(14): 17377-17392, 2024 Apr 10.
Artigo em Inglês | MEDLINE | ID: mdl-38551391

RESUMO

Quinolone residues resulting from body metabolism and waste discharge pose a significant threat to the ecological environment and to human health. Therefore, it is essential to monitor quinolone residues in the environment. Herein, an efficient and sensitive matrix-assisted laser desorption/ionization mass spectrometry (MALDI/MS) method was devised by using a novel molecularly imprinted heterojunction (MIP-TNs@GCNs) as the matrix. Molecularly imprinted titanium dioxide nanosheets (MIP-TNs) and graphene-like carbon nitrides (GCNs) were associated at the heterojunction interface, allowing for the specific, rapid, and high-throughput ionization of quinolones. The mechanism of MIP-TNs@GCNs was clarified using their adsorption properties and laser desorption/ionization capability. The prepared oxygen-vacancy-rich MIP-TNs@GCNs heterojunction exhibited higher light absorption and ionization efficiencies than TNs and GCNs. The good linearity (in the quinolone concentration range of 0.5-50 pg/µL, R2 > 0.99), low limit of detection (0.1 pg/µL), good reproducibility (n = 8, relative standard deviation [RSD] < 15%), and high salt and protein resistance for quinolones in groundwater samples were achieved using the established MIP-TNs@GCNs-MALDI/MS method. Moreover, the spatial distributions of endogenous compounds (e.g., amino acids, organic acids, and flavonoids) and xenobiotic quinolones from Rhizoma Phragmitis and Rhizoma Nelumbinis were visualized using the MIP-TNs@GCNs film as the MALDI/MS imaging matrix. Because of its superior advantages, the MIP-TNs@GCNs-MALDI/MS method is promising for the analysis and imaging of quinolones and small molecules.


Assuntos
Quinolonas , Humanos , Reprodutibilidade dos Testes , Espectrometria de Massas por Ionização e Dessorção a Laser Assistida por Matriz/métodos , Proteínas , Adsorção
18.
Int J Gen Med ; 17: 885-894, 2024.
Artigo em Inglês | MEDLINE | ID: mdl-38468821

RESUMO

Background and Objective: Congenital hypothyroidism (CH) is indeed a prevalent neonatal endocrine disorder, affecting approximately 1 in 2000-3000 newborns worldwide, and 1 in 2400 newborns in China. Despite its high incidence, the genetic causes of CH, particularly those related to thyroid dysgenesis (TD), are still not well understood. However, previous studies have suggested that JAG1 may be a potential susceptibility gene for congenital thyroid defects. To explore the association between JAG1 and CH, we screened JAG1 variants in a large cohort of 813 CH patients. Methods: We performed genetic analysis of JAG1 using next-generation sequencing in 813 CH cases. The pathogenicity of the variants was assessed by bioinformatics softwares, protein sequence conservation analysis, and hydrophobic analysis. Further genetic analysis was conducted targeting 20 CH-related genes in these 25 JAG1 variant carriers. Results: We identified 10 pathogenic missense mutations (p.V45L, p.V272I, p.P552L, p.G610E, p.G852D, p.A891T, p.E1030K, p.R1060W, p.A1131T, p.P1174L) carried by 25 patients, the mutation rate of JAG1 in CH was 3.08%. Among these 25 patients, 16 with 1 variant, 6 with 2 variants, and the other 3 with 3 variants. Our findings indicated that JAG1 variants confer genetic susceptibility to both TD and DH, but with different inheritance models. JAG1 variants lead to TD mainly through monogenic model, while for DH cases, both monogenic mechanisms and oligogenic mechanisms play a pivotal role. Oligogenicity may contribute to the disease severity of DH. Conclusion: JAG1 is a shared genetic factor in TD and DH, with a detection rate of 3.08% in Chinese individuals with CH. A comparison between the oligogenic and monogenic groups suggests a gene dosage effect in CH. Patients with the same JAG1 mutation exhibit diverse clinical phenotypes, indicating complex mechanisms underlying phenotypic heterogeneity.

19.
Exp Lung Res ; 50(1): 42-52, 2024.
Artigo em Inglês | MEDLINE | ID: mdl-38425288

RESUMO

BACKGROUND: Acute respiratory distress syndrome (ARDS) is a respiratory failure syndrome characterized by hypoxemia and changes in the respiratory system. ARDS is the most common cause of death in COVID-19 deaths was ARDS. In this study, we explored the role of miR-223 in exosomes in ARDS. METHODS: Exosomes were purified from the supernatants of macrophages. qPCR was used to detect relative mRNA levels. A luciferase reporter assay was performed to verify the miRNA target genes. Western blotting was used to detect the activation of inflammatory pathways. Flow cytometry was performed to assess apoptosis. An LPS-induced ARDS mouse model was used to assess the function of miR-223 in ARDS. RESULTS: Exosomes secreted by macrophages promoted apoptosis in A549 cells. Macrophages and exosomes contain high levels of miR-223. Exogenous miR-223 can decrease the expression of insulin-like growth factor 1 receptor (IGF-1R) in A549 and promote the apoptosis of A549.Transfection of anti-miR223 antisense nucleotides effectively reduced the level of miR-223 in macrophages and exosomes and eliminated the pro-apoptotic effect of A549. In vivo, LPS stimulation increased inflammatory cell infiltration in the lungs of mice, whereas knockdown of miR-223 in mice resulted in significantly reduced eosinophil infiltration. CONCLUSIONS: Macrophages can secrete exosomes containing miR-223 and promote apoptosis by targeting the IGF-1R/Akt/mTOR signaling pathway in A549 cells and mouse models, suggesting that miR-223 is a potential target for treating COVID-19 induced ARDS.


Assuntos
COVID-19 , MicroRNAs , Síndrome do Desconforto Respiratório , Animais , Camundongos , Comunicação Celular , Peptídeos Semelhantes à Insulina , Lipopolissacarídeos , MicroRNAs/genética , MicroRNAs/metabolismo , Síndrome do Desconforto Respiratório/genética , Humanos
20.
Front Bioeng Biotechnol ; 12: 1328996, 2024.
Artigo em Inglês | MEDLINE | ID: mdl-38481572

RESUMO

Introduction: Walking speed can affect gait stability and increase the risk of falling. Methods: In this study, we design a device to measure the distribution of the plantar pressure to investigate the impact of the walking speed on the stability of the human gait and movements of the body. We fused the entropy acquired at multiple scales with signals of the plantar pressure to evaluate the effects of the walking speed on the stability of the human gait. We simultaneously collected data on the motion-induced pressure from eight plantar regions to obtain the fused regional pressure. To verify their accuracy, we obtained data on the plantar pressure during walking by using the force table of the Qualisys system. We then extracted the peak points and intervals of the human stride from pressure signals fused over three regions, and analyzed the mechanics of their regional fusion by using the regional amplitude-pressure ratio to obtain the distribution of the plantar pressure at an asynchronous walking speed. Furthermore, we introduced multi-scale entropy to quantify the complexity of the gait and evaluate its stability at different walking speeds. Results: The results of experiments showed that increasing the speed from 2 to 6 km/h decreased the stability of the gait, with a 26.7% increase in the amplitude of pressure in the region of the forefoot. The hindfoot and forefoot regions were subjected to the minimal pressure at a speed of 2 km/h, while the most consistent stress was observed in regions of the forefoot, midfoot, and hindfoot. Moreover, the curve of entropy at a speed of 2 km/h exhibited a slow decline at a small scale and high stability at a large scale. Discussion: The multi-scale entropy increased the variation in the stability of the synchronous velocity of walking compared with the sample entropy and the analysis of regional fusion mechanics. Multi-scale entropy can thus be used to qualitatively assess the relationship between the speed and stability of the gait, and to identify the most stable gait speed that can ensure gait stability and posture control.

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