Divergent synthesis of difluoromethylated indole-3-carbinols, bisindolylmethanes and indole-3-methanamines.

Indole-3-carbinol, bisindolylmethanes (BIMs) and indole-3-methanamines exhibit diverse therapeutic activities. Fluorinated molecules are widely used in pharmaceuticals. Herein we report a facile and straightforward method for the successful synthesis of difluoromethylated indole-3-carbinols, bisindolylmethanes and indole-3-methanamines by a Friedel-Crafts reaction. The reaction involves the in situ generation of difluoroacetaldehyde from difluoroacetaldehyde ethyl hemiacetal in the presence of a base or an acid. This protocol is distinguished by its good to excellent yields, broad substrate compatibility, good functional group tolerance and scalability.

The Complete Mitogenome of Xeruca formosensis (Rathbun, 1921) (Crustacea: Brachyura: Ocypodidae), a Fiddler Crab Endemic to Taiwan, with its Phylogenetic Position in the Family.

Xeruca formosensis is a species and genus of fiddler crab endemic to Taiwan, with limited distribution in western Taiwan and the offshore Penghu Islands. This study reports the complete mitochondrial genome (mitogenome) of this species using next-generation sequencing. The mitogenome contains 15,684 bp, comprising 13 protein-coding genes, 22 tRNAs, 2 ribosomal RNAs and a 750-bp intergenic space (control region). The nucleotide composition is biased toward A+T (69.4%). A phylogenetic analysis based on the concatenated protein-coding genes showed that the genera Xeruca Shih, 2015 and Tubuca Bott, 1973 are sister to each other. In addition, the phylogeny of the 16 available mitogenomes in the family Ocypodidae also supports the current systematics of this family based on one nuclear and two mitochondrial markers. As this species inhabits high intertidal mudflats with high temperature and high salinity, mitogenome analyses may help us understand the mechanisms of adaptation to extreme environments, as well as the connectivity of metapopulations based on mitogenomes from different populations.

Phylogeography of the Fiddler Crab Tubuca arcuata (Crustacea: Brachyura: Ocypodidae) in East Asia and Northern Vietnam.

The fiddler crab Tubuca arcuata (Crustacea: Ocypodidae: Gelasiminae) is widely distributed across East Asia and northern Vietnam. Particularly, this species inhabits estuarine mangroves and mudflats of the East Asian continent, as well as the main islands of Japan and the Ryukyus. By comparing sequences of the mitochondrial 16S, cytochrome oxidase subunit I (COI), and control region genes, two main clades of this species were elucidated. The northern (N) clade was mostly restricted to the region north of the Taiwan Strait, whereas the wide (W) clade could be found throughout the entire range inhabited by this species. Based on the distribution of the ancestral haplotypes of COI and the divergence time of the two clades, our findings suggest that the land bridge barrier present in the Taiwan Strait during glaciations might have played an important role in their cladogenesis, approximately 0.93 million years ago. Here, we propose that the distribution of the ancestral haplotype of the W clade in the Ryukyus and the main islands of Japan was determined by the Paleo-Kuroshio Current, whereas the modern distribution pattern is shaped by the modern Kuroshio Current and other warm currents during the crab reproduction season in the summer.

DNA metabarcoding for dietary analysis of Holland's carp (Spinibarbus hollandi) to evaluate the threat to native fishes in Taiwan.

DNA metabarcoding analysis for gut contents has been shown to compensate the disadvantage of traditionally morphological identification and offer higher resolution of prey items in an efficient way. Holland's carp (Spinibarbus hollandi) is a freshwater fish native to southern and eastern Taiwan. In the past two decades, this species has been introduced as a sport fish into the river basins of northern and western Taiwan. The large body size and active predation make it a potential threat for native fishes, but which native species are preyed by Holland's carp remains unknown. In this study, the diet from the gut contents of Holland's carp from the Zhonggang River, an invaded basin, was examined using DNA metabarcoding from 51 individuals and by morphological examinations on 140 samples. Detritus of plants were found in 83.6% samples (117 individuals). Twenty fish species of seven families were identified by DNA metabarcoding, including species of all water layers. Taiwan torrent carp (Acrossocheilus paradoxus) and Rhinogobius spp. are the most common prey items. Based on the results of this study, Holland's carp is considered an opportunistic omnivore because of its diverse diet items, which is an important trait for successful invasive fish species. The population decline of Opsariichthys pachycephalus may not result from the invasion of Holland's carps. Nonetheless, the time lag between successful invasion and the samplings of this study may be a concern because the population size of O. pachycephalus may have declined and become difficult to prey. The Holland's carps consumed the least species in winter; nonetheless, the occurrence frequencies of preys among seasons were not significantly different probably because of limited temperature fluctuation. The smallest Holland's carps consumed the least prey species compared to other size categories, similar to the relationship of prey species number to size of invasive largemouth bass (Micropterus salmoides).

Cholest-4-en-3-one attenuates TGF-ß responsiveness by inducing TGF-ß receptors degradation in Mv1Lu cells and colorectal adenocarcinoma cells.

PURPOSE: The transforming growth factor-beta (TGF-ß) pathway is an important in the initiation and progression of cancer. Due to a strong association between an elevated colorectal cancer risk and increase fecal excretion of cholest-4-en-3-one, we aim to determine the effects of cholest-4-en-3-one on TGF-ß signaling in the mink lung epithelial cells (Mv1Lu) and colorectal cancer cells (HT29) in vitro. METHODS: The inhibitory effects of cholest-4-en-3-one on TGF-ß-induced Smad signaling, cell growth inhibition, and the subcellular localization of TGF-ß receptors were investigated in epithelial cells using a Western blot analysis, luciferase reporter assays, DNA synthesis assay, confocal microscopy, and subcellular fractionation. RESULTS: Cholest-4-en-3-one attenuated TGF-ß signaling in Mv1Lu cells and HT29 cells, as judged by a TGF-ß-specific reporter gene assay of plasminogen activator inhibitor-1 (PAI-1), Smad2/3 phosphorylation and nuclear translocation. We also discovered that cholest-4-en-3-one suppresses TGF-ß responsiveness by increasing lipid raft and/or caveolae accumulation of TGF-ß receptors and facilitating rapid degradation of TGF-ß and thus suppressing TGF-ß-induced signaling. CONCLUSIONS: Our results suggest that cholest-4-en-3-one inhibits TGF-ß signaling may be due, in part to the translocation of TGF-ß receptor from non-lipid raft to lipid raft microdomain in plasma membranes. Our findings also implicate that cholest-4-en-3-one may be further explored for its potential role in colorectal cancer correlate to TGF-ß deficiency.

The complete mitochondrial genome sequence of Nemateleotris decora (gobiiformes, gobiidae).

We determined the mitochondrial genome (mitogenome) sequence of Nemateleotris decora by using a long polymerase chain reaction (PCR) method and next-generation sequence (NGS) technology. The total length of N. decora mitogenome is 16 502 bp, consisting of 13 protein-coding genes, 22 transfer RNAs, two ribosomal RNAs genes, and a non-coding control region. The overall base composition of N. decora is 25.22% for A, 25.90% for T, 30.69% for G, and 18.19% for C. Our results showed the complete mitogenome is a good marker for the phylogenetic study.

Complete mitochondrial genome of Rasbora trilineata (Cypriniformes, Cyprinidae).

We describe the complete mitochondrial genome sequence of Rasbora trilineata, which is a small cyprinid popular in aquarium trade. The circle genome (16,747 bp) has the typical vertebrate mitochondrial gene arrangement, including 13 protein-coding genes, 22 tRNA genes, 2 rRNA genes and a non-coding control region. The overall base composition of R. trilineata is 25.35% for T, 26.43% for C, 33.57% for A, and 14.65% for G, with a slight AT bias of 58.92%.

The complete mitochondrial genome sequence of Belligobio nummifer (Cypriniformes, Cyprinidae).

We determined the complete mitochondrial genome (mitogenome) sequence of Belligobio nummifer, which is known as a cyprinid fish in mainland China, with a long polymerase chain reaction (PCR) method. The total length of B. nummifer mitogenome is 16,610 bp, consisting of 13 protein-coding genes, 22 transfer RNAs, 2 ribosomal RNAs genes and a noncoding control region. The overall base composition of B. nummifer is 29.74% for A, 26.12% for T, 17.18% for G, and 26.97% for C, with a slight AT bias of 55.86%. The complete mitogenomic data may provide more informative for phylogenetic approach for gudgeons phylogeny.

Smilosicyopus leprurus (Teleostei: Gobiidae) is a Fin-eater.

Ying-Tzu Lu, Min-Yun Liu, You He, and Te-Yu Liao (2016) Smilosicyopus leprurus is a small goby distributed in the Ishigaki Island and Taiwan. Hobbyists found S. leprurus attacked on the caudal fin of fishes kept together. In this study we investigate whether this fin-eating behavior occurs in the field and whether S. leprurus can be considered a fin-eater. Behavior observation in a tank showed S. leprurus snapped off a piece of fins and swallowed. Among S. leprurus preserved immediately after capture, a fin fragment and a few scales were recovered in the gut of a specimen and DNA barcoding shows the fin fragment belonging to Sicyopterus japonicas. The fin-eating behavior of S. leprurus occurs in captivity and in the wild. In addition, the 3D renderings of oral jaws of S. leprurus were provided. Oral teeth are numerous and arranged in close proximity to each other all together like a bladed dentition, which may provide the capability to shear the fin of its prey. The present study shows S. leprurus a fin-eater despite not feeding exclusively on fins.

Population genetics of the fiddler crab Uca sindensis (Alcock, 1900) (Crustacea: Brachyura: Ocypodidae) from the Arabian Sea.

BACKGROUND: The fiddler crab Ucasindensis (Alcock, 1900) (Crustacea: Brachyura: Ocypodidae) is distributed in the northern coasts of the Arabian Sea (Pakistan, Iran, Iraq, and Kuwait). Its typical habitat is on high intertidal areas with higher salinity, which might restrict its distribution, especially within the Persian Gulf. The purpose of the present phylogeographicstudy is to understand whether the Strait of Hormuz acts as a barrier to the gene flow of this species. RESULTS: The genetic analyses of the mitochondrial 16S rRNA, cytochrome oxidase subunit I (COI), and control region (CR) of specimens from various localities showed that there was no genetic differentiation between the populations inside and outside of the Persian Gulf. CONCLUSIONS: We conclude that the narrow Strait of Hormuz does not form a barrier for the larval dispersal in this species. Its restricted distribution in the northern Arabian Sea may instead be associated with its preference for higher salinity sediments present in the coasts of thisregion.

A new species of fiddler crab from the Ogasawara (Bonin) Islands, Japan, separated from the widely-distributed sister species Uca (Paraleptuca) crassipes (White, 1847) (Crustacea: Decapoda: Brachyura: Ocypodidae).

A new species of fiddler crab (Brachyura: Ocypodidae), Uca boninensis sp. nov., is described from the Ogasawara (Bonin) Islands, Japan. The new species has previously been identified with the widely distributed U. crassipes (White, 1847), from which it differs by having a slightly differently shaped carapace, and relatively stouter male first gonopods (G1). The recognition of the new species is also supported by differences in the mitochondrial cytochrome oxidase I (COI) and control region (CR) genes. U. boninensis sp. nov., appears to be endemic to the Ogasawara Islands, and as the only known population is small, urgent conservation measures are needed for its protection. Our study brings the total number of the Japanese fiddler crab species to 12.