Abrupt shift in the organic matter input to sediments in Lake Liangzi, a typical macrophyte-dominated shallow lake in Eastern China, and its response to anthropogenic impacts.

Understanding the historical variations in organic matter (OM) input to lake sediments and the possible mechanisms regulating this phenomenon is important for studying carbon cycling and burial in lake systems; however, this topic remains poorly addressed for macrophyte-dominated lakes. To bridge these gaps, we analyzed bulk OM and molecular geochemical proxies in a dated sediment core from Lake Liangzi, a typical submerged macrophyte-dominated lake in East China, to infer changes in OM input to sediments over the past 169 years due to the intensification of human activities in the catchment. A relatively primitive OM input pattern was observed in ca. 1841-1965, during which the lowest hydrogen index (HI), short-chain n-alkane abundance, and n-C17/n-C16 alkane indicated minimal input from phytoplankton, whereas the high Paq (proxy of aquatic macrophyte input) and long-chain n-alkane abundance suggested dominant and subordinate inputs from submerged and emergent macrophytes, respectively. OM input transitioned during ca. 1965-1993, with the highest Paq and lowest long-chain n-alkane abundance, indicating an increase of submerged macrophyte input and concurrent decline of emergent macrophyte input, probably caused by hydrological regulation practices and land reclamation in the 1960s, respectively. A further shift in OM input was observed since ca. 1993, characterized by the beginning of an increase in phytoplankton input, as indicated by the greater HI, short-chain n-alkane abundance, and n-C17/n-C16 alkane in sediments. Moreover, a lower Paq and higher abundance of long-chain n-alkanes indicated a decline in input from submerged macrophytes and an elevated input from terrestrial plants. The increase in αß-hopane abundance and homohopane index value indicated that petroleum-sourced OM was first introduced into the sediments. The causes of these OM input changes included nutrient influx associated with domestic and industrial discharge, aquaculture within the lake, and widespread deforestation and land clearance in the catchment.

Local in Time Conservative Binary Dynamics at Fourth Post-Minkowskian Order.

Leveraging scattering information to describe binary systems in generic orbits requires identifying local and nonlocal in time tail effects. We report here the derivation of the universal (nonspinning) local in time conservative dynamics at fourth post-Minkowskian order, i.e., O(G^{4}). This is achtieved by computing the nonlocal-in-time contribution to the deflection angle, and removing it from the full conservative value in [C. Dlapa et al., Phys. Rev. Lett. 128, 161104 (2022).PRLTAO0031-900710.1103/PhysRevLett.128.161104; C. Dlapa et al., Phys. Rev. Lett. 130, 101401 (2023).PRLTAO0031-900710.1103/PhysRevLett.130.101401]. Unlike the total result, the integration problem involves two scales-velocity and mass ratio-and features multiple polylogarithms, complete elliptic and iterated elliptic integrals, notably in the mass ratio. We reconstruct the local radial action, center-of-mass momentum and Hamiltonian, as well as the exact logarithmic-dependent part(s), all valid for generic orbits. We incorporate the remaining nonlocal terms for ellipticlike motion to sixth post-Newtonian order. The combined Hamiltonian is in perfect agreement in the overlap with the post-Newtonian state of the art. The results presented here provide the most accurate description of gravitationally bound binaries harnessing scattering data to date, readily applicable to waveform modeling.

Composition regulates dissolved organic matter adsorption onto iron (oxy)hydroxides and its competition with phosphate: Implications for organic carbon and phosphorus immobilization in lakes.

Dissolved organic matter (DOM) is a heterogeneous pool of compounds and exhibits diverse adsorption characteristics with or without phosphorous (P) competition. The impacts of these factors on the burial and mobilization of organic carbon and P in aquatic ecosystems remain uncertain. In this study, an algae-derived DOM (ADOM) and a commercially available humic acid (HA) with distinct compositions were assessed for their adsorption behaviors onto iron (oxy)hydroxides (FeOx), both in the absence and presence of phosphate. ADOM contained less aromatics but more protein-like and highly unsaturated structures with oxygen compounds (HUSO) than HA. The adsorption capacity of FeOx was significantly greater for ADOM than for HA. Protein-like and HUSO compounds in ADOM and humic-like compounds and macromolecular aromatics in HA were preferentially adsorbed by FeOx. Moreover, ADOM demonstrated a stronger inhibitory effect on phosphate adsorption than HA. This observation suggests that the substantial release of autochthonous ADOM by algae could elevate internal P loading and pose challenges for the restoration of restore eutrophic lakes. The presence of phosphate suppressed the adsorption of protein-like compounds in ADOM onto FeOx, resulting in an increase in the relative abundance of protein-like compounds and a decrease in the relative abundance of humic-like compounds in post-adsorption ADOM. In contrast, phosphate exhibited no discernible impact on the compositional fractionation of HA. Collectively, our results show the source-composition characters of DOM influence the immobilization of both DOM and P in aquatic ecosystems through adsorption processes. The preferential adsorption of proteinaceous compounds within ADOM and aromatics within HA highlights the potential for the attachment with FeOx to diminish the original source-specific signatures of DOM, thereby contributing to the shared DOM characteristics observed across diverse aquatic environments.

Genome-wide identification of the TIFY gene family in tobacco and expression analysis in response to Ralstonia solanacearum infection.

The TIFY gene family plays an essential role in plant development and abiotic and biotic stress responses. In this study, genome-wide identification of TIFY members in tobacco and their expression pattern analysis in response to Ralstonia solanacearum infection were performed. A total of 33 TIFY genes were identified, including the TIFY, PPD, ZIM&ZML and JAZ subfamilies. Promoter analysis results indicated that a quantity of light-response, drought-response, SA-response and JA-response cis-elements exist in promoter regions. The TIFY gene family exhibited expansion and possessed gene redundancy resulting from tobacco ploidy change. In addition, most NtTIFYs equivalently expressed in roots, stems and leaves, while NtTIFY1, NtTIFY4, NtTIFY18 and NtTIFY30 preferentially expressed in roots. The JAZ III clade showed significant expression changes after inoculation with R. solanacearum, and the expression of NtTIFY7 in resistant varieties, compared with susceptible varieties, was more stably induced. Furthermore, NtTIFY7-silenced plants, compared with the control plants, were more susceptible to bacterial wilt. These results lay a foundation for exploring the evolutionary history of TIFY gene family and revealing gene function of NtTIFYs in tobacco bacterial wilt resistance.

Comprehensive genome sequence analysis of Ralstonia solanacearum gd-2, a phylotype I sequevar 15 strain collected from a tobacco bacterial phytopathogen.

Introduction: Plant bacterial wilt is an important worldwide disease caused by Ralstonia solanacearum which is a complex of species. Methods: In this study, we identified and sequenced the genome of R. solanacearum strain gd-2 isolated from tobacco. Results: Strain gd-2 was identified as R. solanacearum species complex (RSSC) phylotype I sequevar 15 and exhibited strong pathogenicity to tobacco. The genome size of gd-2 was 5.93 Mb, including the chromosomes (3.83 Mb) and the megaplasmid (2.10 Mb). Gene prediction results showed that 3,434 and 1,640 genes were identified in the chromosomes and plasmids, respectively. Comparative genomic analysis showed that gd-2 exhibited high conservation with ten highly similar strain genomes and the differences between gd-2 and other genomes were mainly located at positions GI12-GI14. 72 type III effectors (T3Es) were identified and RipAZ2 was a T3E specific to gd-2 compared with other eight sequenced strain. Discussion: Our study provides a new basis and evidence for studying the pathogenic mechanism of R. solanacearum.

NanoLAS: a comprehensive nanobody database with data integration, consolidation and application.

Nanobodies, a unique subclass of antibodies first discovered in camelid animals, are composed solely of a single heavy chain's variable region. Their significantly reduced molecular weight, in comparison to conventional antibodies, confers numerous advantages in the treatment of various diseases. As research and applications involving nanobodies expand, the quantity of identified nanobodies is also rapidly growing. However, the existing antibody databases are deficient in type and coverage, failing to satisfy the comprehensive needs of researchers and thus impeding progress in nanobody research. In response to this, we have amalgamated data from multiple sources to successfully assemble a new and comprehensive nanobody database. This database has currently included the latest nanobody data and provides researchers with an excellent search and data display interface, thus facilitating the progression of nanobody research and their application in disease treatment. In summary, the newly constructed Nanobody Library and Archive System may significantly enhance the retrieval efficiency and application potential of nanobodies. We envision that Nanobody Library and Archive System will serve as an accessible, robust and efficient tool for nanobody research and development, propelling advancements in the field of biomedicine. Database URL: https://www.nanolas.cloud.

Transcriptomics and virus-induced gene silencing identify defence-related genes during Ralstonia solanacearum infection in resistant and susceptible tobacco.

Bacterial wilt (BW) caused by Ralstonia solanacearum is a globally prevalent bacterial soil-borne disease. In this study, transcriptome sequencing were subjected to roots after infection with the R. solanacearum in the resistant and susceptible tobacco variety. DEGs that responded to R. solanacearum infection in both resistant and susceptible tobacco contributed to pectinase and peroxidase development and were enriched in plant hormone signal transduction, signal transduction and MAPK signalling pathway KEGG terms. Core DEGs in the resistant tobacco response to R. solanacearum infection were enriched in cell wall, membrane, abscisic acid and ethylene terms. qRT-PCR indicated that Nitab4.5_0004899g0110, Nitab4.5_0004234g0080 and Nitab4.5_0001439g0050 contributed to the response to R. solanacearum infection in different resistant and susceptible tobacco. Silencing the p450 gene Nitab4.5_0001439g0050 reduced tobacco resistance to bacterial wilt. These results improve our understanding of the molecular mechanism of BW resistance in tobacco and solanaceous plants.

The effects of different doses of lanthanum-modified bentonite in combination with a submerged macrophyte (Vallisneria denseserrulata) on phosphorus inactivation and macrophyte growth: A mesocosm study.

The combination of chemical phosphorus (P) inactivation and submerged macrophyte transplantation has been widely used in lake restoration as it yields stronger effects than when applying either method alone. However, the dose effect of chemical materials on P inactivation when used in combination with submerged macrophytes and the influences of the chemicals used on the submerged macrophytes growth remain largely unknown. In this study, we investigated P inactivation in both the water column and the sediment, and the responses of submerged macrophytes to Lanthanum modified bentonite (LMB) in an outdoor mesocosm experiment where Vallisneria denseserrulata were transplanted into all mesocosms and LMB was added at four dosage levels, respectively: control (LMB-free), low dosage (570 g m-2), middle dosage (1140 g m-2), and high dosage (2280 g m-2). The results showed that the combination of LMB dosage and V. denseserrulata reduced TP in the water column by 32%-38% compared to V. denseserrulata alone, while no significant difference was observed among the three LMB treatments. Porewater soluble reactive P, two-dimensional diffusive gradient in thin films (DGT)-labile P concentrations, and P transformation in the 0-1 cm sediment layer exhibited similar trends along the LMB dosage gradient. Besides, LMB inhibited plant growth and reduced the uptake of mineral elements (i.e., calcium, manganese, iron, and magnesium) in a dosage-dependent manner with LMB. LMB may reduce plant growth by creating a P deficiency risk for new ramets and by interfering with the uptake of mineral elements. Considering both the dose effect of LMB on P inactivation and negative effect on macrophyte growth, we suggest a "small dosage, frequent application" method for LMB application to be used in lake restoration aiming to recover submerged macrophytes and clear water conditions.

Climate-associated variation in the drivers of benthic macroinvertebrate species-area relationships across shallow freshwater lakes.

The island species-area relationship (ISAR) describes how species richness increases with increasing area of a given island or island-like habitat, such as freshwater lakes. While the ISAR is one of the most common phenomena observed in ecology, there is variation in both the form of the relationship and its underlying mechanisms. We compiled a global data set of benthic macroinvertebrates from 524 shallow freshwater lakes, ranging from 1 to 293,300 ha in area. We used individual-based rarefaction to determine the degree to which ISAR was influenced by mechanisms other than passive sampling (larger islands passively sample more individuals from the regional pool and, therefore, have more species than smaller islands), which would bias results away from expected relationships between rarefied species richness (and other measures that capture relative abundances) and lake area. We also examined how climate may alter the shape of the ISARs. We found that both rarefied species richness (the number of species standardized by area or number of individuals) and a measure of evenness emphasizing common species exhibit shallow slopes in relationships with lake area, suggesting that the expected ISARs in these lakes most likely result from passive sampling. While there was considerable variation among ISARs across the investigated lakes, we found an overall positive rarefied ISAR for lakes in warm (i.e. tropical/subtropical) regions (n = 195), and in contrast, an overall negative rarefied ISAR in cool (i.e. north temperate) lakes (n = 329). This suggested that mechanisms beyond passive sampling (e.g. colonization-extinction dynamics and/or heterogeneity) were more likely to operate in warm lakes. One possible reason for this difference is that the area-dependent intensity of fish predation, which can lead to flatter ISARs, is weaker in warmer relative to cooler lakes. Our study illustrates the importance of understanding both the pattern and potential processes underlying the ISARs of freshwater lakes in different climatic regions. Furthermore, it provides a baseline for understanding how further changes to the ecosystem (i.e. in lake area or climate) might influence biodiversity patterns.

Native molluscs alleviate water quality impacts of invasive crayfish.

Freshwaters are considered to be the most vulnerable ecosystems facing biological invasions, and the red swamp crayfish (Procambarus clarkii) is one of the most widespread aquatic invasive species in the world. P. clarkii has negative impacts on water quality in the lakes that it invades by, for instance, increasing their turbidity and nutrient concentrations and reducing macrophyte biomass. However, native taxa such as snails and mussels could potentially help to maintain a clear-water status in lakes by grazing on periphyton or by phytoplankton filtration. To examine the potential negative effects of P. clarkii on the clear-water state in lakes dominated by the macrophyte Vallisneria denseserrulata and the potential for native species to buffer these effects, we tested the crayfish impact in the absence and presence of the snail Bellamya aeruginosa and the mussel Sinanodonta woodiana at different biomasses. In the presence of crayfish, total suspended solids, total phosphorus, and chlorophyll a concentrations significantly increased compared to the control treatments without crayfish. However, when crayfish coexisted with snails or mussels, these three environmental variables all decreased in concentration compared to the crayfish-only treatment. Low (500 g/m2) and high (1500 g/m2) snail or mussel biomass had similar buffering effects. Macrophyte biomass in the crayfish and high mussel biomass treatment was 43 % higher than in the crayfish-only treatment. Native molluscs therefore alleviated the negative effects of crayfish on lake water quality and promoted native macrophyte growth. We conclude that a thriving native mollusc community may help in maintaining the clear-water state in lakes following crayfish invasion.