Rhizosphere effect on the relationship between dissolved organic matter and functional genes in contaminated soil.

Arsenic contamination in a mining area is a potential threat to the local population. In the context of one-health, biological pollution in contaminated soil should be known and understandable. This study was conducted to clarify the effects of amendments on arsenic species and potential threat factors (e.g., arsenic-related genes (AMGs), antibiotic resistance genes (ARGs) and heavy-metal resistance genes (MRGs)). Ten groups (control (CK), T1, T2, T3, T4, T5, T6, T7, T8, and T9) were set up by adding different ratio of organic fertilizer, biochar, hydroxyapatite and plant ash. The maize crop was grown in each treatment. Compared with CK, the bioavailability of arsenic was reduced by 16.2%-71.8% in the rhizosphere soil treatments, and 22.4%-69.2% in the bulk soil treatments, except for T8. The component 2 (C2), component 3 (C3) and component 5 (C5) of dissolved organic matter (DOM) increased by 22.6%-72.6%, 16.8%-38.1%, 18.4%-37.1%, respectively, relative to CK in rhizosphere soil. A total of 17 AMGs, 713 AGRs and 492 MRGs were detected in remediated soil. The humidification of DOM might directly correlate with MRGs in both soils, while it was influenced directly on ARGs in bulk soil. This may be caused by the rhizosphere effect, which affects the interaction between microbial functional genes and DOM. These findings provide a theoretical basis for regulating soil ecosystem function from the perspective of arsenic contaminated soil.

Synergistic simultaneous endogenous partial denitrification/anammox (EPDA) and denitrifying dephosphatation for advanced nitrogen and phosphorus removal in a complete biofilm system.

To achieve simultaneous biological nitrogen and phosphorus removal from municipal wastewater, the endogenous partial denitrification/anammox (EPDA) was combined with denitrifying dephosphatation in a complete biofilm reactor. Advanced nitrogen and phosphorus removal were achieved with effluent total nitrogen (TN) and PO43--P concentrations of 7.77 ± 0.33 mg/L and 0.35 ± 0.10 mg/L, respectively. Anammox took a major role in the system, accounting for 76 ± 7% of nitrogen removal. 16S rRNA high-throughput sequencing results showed that the anammox bacteria co-existed with the denitrifying glycogen accumulating organisms (DGAOs) and the denitrifying phosphorus accumulating organisms (DPAOs). Anammox bacteria were mainly distributed in the inner layer, while DGAOs and DPAOs existed in the outer layer of EPDA biofilms. Furthermore, based on the EPDA biofilm system, a promising advanced nitrogen and phosphorus removal process was suggested to achieve lower requirements for energy and reagent consumption.

Temporal variation of the coupling relationship between methanogens and biogeochemical process in soil-microbes-rice system.

Microbial community were most resilient option for methane associated mitigation strategies. Biogas slurry provides plant nutrition and affects microbial community. However, little is known about the changes of the functional guilds (methanogen and methanotroph) in the geochemical context after addition biogas slurry. For this purpose, a pot experiment was conducted. Six treatment groups were included in this study, four with biogas slurry: water ratio (1:4, T02; 2:3, T04; 3:2, T06; 4:1, T08), one with a chemical fertilizer (F), and a control (CK). The effective tiller and biomass significantly increased by 1.9 times and 2.1 times in T02 relative to CK. The relative abundance of Bacteroidetes in the biogas slurry treatments was 31.5%, while that in CK was 11.4%. The dominant methanogens in CK, F and treatments were different at heading and mature stages. CK and F were hydrogenotrophs with relative abundance of 0.09% and 0.06%, and the treatment group was acetotrophs with mean value of 1.21% at heading stage. Compared with CK, the number of methanotrophs in the treatments at heading stage increased by 4.1 times, while that at mature increased by 10.3 times. The methanogenic community in the treatments may be shaped by the amount of biogas slurry applied rather than by biogeochemical processes at heading stage. Nevertheless, there may be existed synergistic interaction in the soil-microbes-rice system at mature stage. These findings may provide a better understanding of regulating soil respiration in agricultural land.

Ecological circular agriculture: A case study evaluating biogas slurry applied to rice in two soils.

In the context of carbon peak, neutrality, and circular agricultural economy, the use of renewable resources from agricultural processing for plant cultivation still needs to be explored to clarify material flow and its ecological effects. Paddy-upland rotation is an effective agricultural strategy to improve soil quality. This study evaluated the effects of biogas slurry application against those of chemical fertilisers in these two typical Chinese cropping soils. The application of biogas slurry increased total carbon content in paddy soil by 73.4%, and that in upland soil by 65.8%. Conversely, application of chemical fertiliser reduced total carbon in both soil types. There were significant positive correlations between total carbon and Zn, Cu, and Pb in rice husks grown in paddy soil (R2 = 0.95, 0.996, 0.95; p < 0.05). The content of amylose in biogas slurry treatment of paddy soil increased by 35.9%, while that in upland soil decreased by 19.2%. After biogas slurry was applied, the contents of fulvic acid- and humic acid-like substances in paddy soil average increased by 40.9% and 45.6%, while the contents of protein-like components were enhanced by 46.8% in upland soil. This result was consistent with predictions of microbial community function. Microorganisms in paddy soil generally preferred carbon fixation, while those in upland soil preferred hydrocarbon degradation and chemoheterotrophy. Understanding the changes in soil carbon stock and microbial function after biogas slurry application will contribute to sustainable agricultural development and food security.

Achieving advanced nitrogen removal in a novel partial denitrification/anammox-nitrifying (PDA-N) biofilter process treating low C/N ratio municipal wastewater.

For achieving mainstream anammox, a novel partial denitrification/anammox-nitrifying (PDA-N) biofilter process to treat municipal wastewater was developed. This process achieved a total inorganic nitrogen (TIN) removal efficiency of 81%, with an average effluent TIN of 7.31 mg·L-1, when the ratio of influent chemical oxygen demand (COD) to TIN was 3.2. Approximately 97% of the TIN was removed by anammox in the PDA biofilter. Nitrite was provided by partial denitrification for anammox. Partial denitrification was driven by Thaurea in the middle and lower regions of the PDA biofilter, while anammox was mainly driven by Candidatus Brocadia in the middle and upper regions. When treating real municipal wastewater, the TIN was efficiently removed in the PDA-N biofilter, with the effluent TIN of 5.96 mg·L-1. Anammox played a primary role, achieving approximately 98% of the TIN removal. Compared to the traditional nitrification/denitrification process, this process can economize organic carbon demand and oxygen consumption.

Feasibility of achieving advanced nitrogen removal via endogenous denitratation/anammox.

For achieving advanced nitrogen removal, a simultaneous endogenous denitratation/anammox (EDA) process was developed that could be undertaken in a sequencing batch reactor. The results indicated that, when the influent COD/TN ratio was 3.16, the advanced nitrogen removal was achieved with the effluent TN of 1.87 mg/L. Nitrogen removal by anammox accounted for 76% of TN removed in the EDA process. Microbial community analysis illuminated that anammox bacteria and denitrifying glycogen accumulating organisms (DGAOs) of 0.91% and 5.05% were detected, respectively. DGAOs could provide nitrite for anammox by using the intracellular carbon source to achieve advanced nitrogen removal. Additionally, based on the EDA process, a promising technique for achieving advanced nitrogen removal was proposed to reduce the consumptions of both the oxygen and the carbon sources.

Effective nitrogen removal in a granule-based partial-denitrification/anammox reactor treating low C/N sewage.

The partial-denitrification/anammox (PDA) process is a promising method to achieve mainstream anammox in wastewater treatment plants (WWTPs). To investigate the feasibility of developing a granule-based process for effective nitrogen removal via PDA, an upflow anaerobic sludge bed reactor was used as a PDA reactor treating low C/N sewage for over 200 days. Granules were formed with an average particle size of 1.92 mm. Metagenomic analysis revealed that the two most abundant genera in granules were Thauera (17.46%) and Candidatus Brocadia (6.24%) which played important roles in achieving partial-denitrification and anammox, respectively. Effective nitrogen removal was achieved with an average effluent TN concentration of 8.74 mg/L when influent TN concentration and COD/TN ratio were 42.56 mg/L and 1.52, respectively. Nitrogen removal via anammox accounted for 90% of dinitrogen production in the PDA reactor. Finally, a granule-based combined process of PDA with nitrification was proposed for achieving anammox in mainstream WWTPs.

Comparative transcriptomics in three Passerida species provides insights into the evolution of avian mitochondrial complex I.

Recent studies have shown that mitochondria play a crucial role in cellular energy production through the oxidative phosphorylation (OXPHOS) system. Complex I (NADH:ubiquinone oxidoreductase), the first and largest enzyme complex of the OXPHOS system, includes both nuclear- and mitochondrial-encoded proteins. However, the patterns of natural selection and phylogenetic implications of complex I in birds still remain unclear. In this study, we combined transcriptomic and phylogenetic analyses to comprehensively determine the evolution of avian complex I. The transcriptomes of three Passerida species (Leiothrix lutea, Spodiopsar sericeus, and Passer montanus) were obtained using the Illumina HiSeq™ 2500 system. More than 192,000,000 clean reads were assembled in a total of 828,267 transcripts. Evolutionary selection analysis suggested that six genes of the core subunits in avian complex I may have undergone putative positive selection. Notably, we found that the mean dN/dS (ω) ratio for mitochondrial genes of core subunits was significantly lower than that for nuclear genes of non-core subunits within complex I. The constructed maximum-parsimony, maximum-likelihood, and Bayesian inference phylogenetic trees were based on 44 complex I genes. We verified that the family Paridae (represented by Parus major and Pseudopodoces humilis) was clustered with Musicicapoidea. Our results provide new insights into the evolution of avian mitochondrial complex I.