Determination of complex type free, non-conjugated oligosaccharide glucose unit values in tomato xylem sap for early detection of nutrient deficiency.

Although knowledge on glycan biosynthesis and processing is continuously maturing, there are still a limited number of studies that examine biological functions of N-glycan structures in plants, which remain virtually unknown. Here, the statistical correlation between nutrient (nitrogen) deficiency symptoms of crops and changes in 8-aminopyrene-1,3,6-trisulfonic acid (APTS)-labeled complex type free oligosaccharides is reported. While deficiency symptoms are predicted by multispectral images and Kjeldahl digestion, APTS-labeled complex type free oligosaccharides are identified by their glucose unit (GU) values in tomato xylem sap, using capillary electrophoresis with laser induced fluorescence detection (CE-LIF). Given the limited number of structures obtained from plants, archived in the literature, in the future, it is intended to create an open access database of promising indicators, namely, glycan structures that are presumably responsible for the nutrient deficiency caused stress in plants (http://glycoplants.org).

Incidence of the thermal transition in the range of 45-5°C in chromatophores present in the wings of Schistocerca americana.

The variation of the color intensity of the chromatophores present in the wings of Schistocerca americana was analyzed by exposing 31 specimens to thermal transitions within the range of 45 - 5 °C.  The adult specimens were collected using a mini-terrarium of dimensions 40x40x30 cm. As a substrate, a layer of soil, stones, and finally a layer of grass were used along with branches of bushes and leaves; hydroponic lettuce, cabbage and the grass were used as food for the specimens. Optical microscopy of the wings of the insects was used for live observation without coverslips or contrasting substances. At 45°C, degradation of color intensity was observed in the chromatophores present in the wings. At 5°C, chromatophores intensify their color to brownish-black. This temperature was the extreme minimum that S. americana could tolerate. We found negative correlation between the temperature and the degree of darkness (R2 = 0.8038). Our results are in accordance with a previously published study in which Phaulacridium vittatum was examined, as the decrease of temperature caused darkening color change in melanin-type chromatophores. The present investigation can be considered as the first initial study of its kind for S. americana, in terms of examining the changes in the color intensity of the chromatophores present in the wings caused by thermal transition under laboratory conditions.

Decision support algorithm for the selection of analytical methods in organic compounds detection for future extraterrestrial exploratory missions.

The search for biotic compounds beyond planet Earth is among the highest priorities in space discovery. We sought to detect organic molecules in various earth soil samples collected from environments with extreme climatic conditions comparable to extraterrestrial environments using HPLC, spectrophotometry (UV, IR), GC/MS and vertical gel electrophoresis analyses systems. The applied methods in the study were compared using a self-developed software tool that was designed to evaluate the viability of instrument selection for organics detection in any given exploratory mission. The tool was created to aid further development and refinements of rapidly improving technological solutions such as MCE and MS instruments. Such comparison can be done quickly and easily, acting as a decision support tool when choosing between analytical methods during any planning phase of future exploration missions led by space agencies (i.e., NASA).

Xylariales: First results of mycological exploration in the Sangay and Llanganates National Parks, Ecuador.

In the present study fungi collections were sampled in the Sangay (SP) and Llanganates (LP) National Parks, from which sequences of the regions of the internal transcribable spacer (ITS1-5.8S-ITS2) of the ribosomal DNA were obtained (RDNA). The taxonomic identification of fungi of the order Xylariales was achieved with the bioinformatic tools, to further study the phylogenetic relationships among the collected individuals and thus contribute with base information on their biological diversity, necessary to design and implement measures for the conservation of fungi. All records belong to the genus Xylaria, of these eight belong to PL and two to SP. A record was not identified at the species level, suggesting that it could be a new species. A phylogenetic tree of Maximum Likelihood was built.

Cryopreservation of orchid seeds through rapid and step freezing methods.

Ecuador has a great variety of climatic regions that potentiate biodiversity. The family Orchidaceae constitutes one of the most important of the country, having identified about 4032 species with a high degree of endemism, therefore the development and research of alternative methods of storage and conservation of species is a strategy of primary interest for researchers and for society in general. In cryopreservation, temperatures reach below -190°C in order to paralyze the chemical reactions and keep the plant material viable for long periods. The present research focuses on the development of protocols for cryopreservation of seeds, aimed at the preservation of biodiversity, focusing on the family Orchidaceae, for the subsequent generation of a seed bank. The assays were performed on seeds of Epidendrum quitensium, Sobralia rosea, and Epidendrum anderssonii. Two freezing rates were tested: rapid freezing at -196°C; and step freezing at -22°C, -60°C to 196°C, further analyzed four combinations from Dimethylsulfoxide DMSO, glycerol and sucrose (DMSO 1M; DMSO 1M + glycerol 1M; DMSO 1M + sucrose 1M; DMSO 1M + glycerol 0,5M + sucrose 0,5M). The best results were obtained both in rapid and stepped freezing without the use of cryo-protective substances, by introducing the seeds directly into liquid nitrogen. Species of the genus Epidendrum presented a more efficient response in comparison to Sobralia. The viability of the seeds was evaluated by the tetrazolium test.

Comparing organic versus conventional soil management on soil respiration.

Soil management has great potential to affect soil respiration. In this study, we investigated the effects of organic versus conventional soil management on soil respiration.  We measured the main soil physical-chemical properties from conventional and organic managed soil in Ecuador. Soil respiration was determined using alkaline absorption according to Witkamp.  Soil properties such as organic matter, nitrogen, and humidity, were comparable between conventional and organic soils in the present study, and in a further analysis there was no statically significant correlation with soil respiration. Therefore, even though organic farmers tend to apply more organic material to their fields, but this did not result in a significantly higher CO2 production in their soils in the present study.

Analysis of removal of cadmium by action of immobilized Chlorella sp. micro-algae in alginate beads.

Cadmium (Cd) is a metal that can negatively interfere with the metabolic systems of living beings. The objective of this work was to evaluate the capacity for cadmium removal in aqueous solutions by immobilized Chlorella sp. in calcium alginate beads. Beads without Chlorella sp. were used as a control. All the treatments were established in triplicate for 80 min, at four concentrations of cadmium (0, 20, 100 and 200 ppm), taking samples of aqueous solution every 10 min, to be read using atomic absorption equipment. The study determined that the treatment of alginate beads with immobilized Chlorella sp. removed 59.67% of cadmium at an initial concentration of 20 ppm, this being the best removal result.

Modelling risk using Bayes theorem of infection by antibiotic-resistant Escherichia coli in rural and urban populations of Ecuador.

Strains of antibiotic-resistant bacteria have become more and more prevalent. This has attracted the attention of health agencies worldwide, leading to an urgent search for mechanisms to put a stop to this phenomenon. This study focuses on estimating the probability of a person in Ecuador (at potential risk) contracting an infection due to ampicillin-resistant Escherichia coli through the consumption of contaminated water, for which a residence area of people was considered in urban or rural areas. The analysis was carried out using the Bayes Theorem and the results show that in the rural population the probability of contracting an infection of this kind is 8.41% whilst in the urban area the probability is 3.57%. These results show an urgent need to provide safe water sources to the population, as well as to instigate an environmental legislation reform that allows for controlling the release of emerging pollutants, including antibiotics.

Unexpected results in Chernozem soil respiration while measuring the effect of a bio-fertilizer on soil microbial activity.

The number of studies investigating the effect of bio-fertilizers is increasing because of their importance in sustainable agriculture and environmental quality. In our experiments, we measured the effect of different fertilizers on soil respiration. In the present study, we were looking for the cause of unexpected changes in CO2 values while examining Chernozem soil samples. We concluded that CO2 oxidizing microbes or methanotrophs may be present in the soil that periodically consume CO2 . This is unusual for a sample taken from the upper layer of well-ventilated Chernozem soil with optimal moisture content.

A novel data storage logic in the cloud.

Databases which store and manage long-term scientific information related to life science are used to store huge amounts of quantitative attributes. Introduction of a new entity attribute requires modification of the existing data tables and the programs that use these data tables. The solution is increasing the virtual data tables while the number of screens remains the same. The main objective of the present study was to introduce a logic called Joker Tao (JT) which provides universal data storage for cloud-based databases. It means all types of input data can be interpreted as an entity and attribute at the same time, in the same data table.