A database of zooplankton biomass in Australian marine waters.

Zooplankton biomass data have been collected in Australian waters since the 1930s, yet most datasets have been unavailable to the research community. We have searched archives, scanned the primary and grey literature, and contacted researchers, to collate 49187 records of marine zooplankton biomass from waters around Australia (0-60°S, 110-160°E). Many of these datasets are relatively small, but when combined, they provide >85 years of zooplankton biomass data for Australian waters from 1932 to the present. Data have been standardised and all available metadata included. We have lodged this dataset with the Australian Ocean Data Network, allowing full public access. The Australian Zooplankton Biomass Database will be valuable for global change studies, research assessing trophic linkages, and for initialising and assessing biogeochemical and ecosystem models of lower trophic levels.

The Australian Monstrilloida (Crustacea: Copepoda) II. Cymbasoma Thompson, 1888.

Monstrilloid copepods collected during the past two decades from zooplankton surveys in reef and coastal areas of Australia were analyzed. A first contribution included the taxonomic analysis of three genera of the Monstrilloida, Monstrillopsis Sars, 1921, Maemonstrilla Grygier & Ohtsuka, 2008, and the newly described Australomonstrillopsis Suárez-Morales & McKinnon, 2014. In this document a taxonomic analysis of the species belonging to the genus Cymbasoma Thompson, 1888 is provided. A total of 28 species were found, most of them being undescribed. Seventeen species were described based on females only and eight on male specimens while three species were described from both sexes. Males of Australian species of Cymbasoma are distinguished by details of the genital complex, body size and proportions, ornamentation and processes of the cephalic region, number of caudal setae, and the characteristic structure or ornamentation of the genital lappets. Two main groups of males were distinguished on the basis of the number of caudal setae (3 or 4). As for the females, 20 of the 25 new species of Cymbasoma have fifth legs with an unarmed inner lobe and three setae on the outer lobe; one of these species (C. jinigudira sp. nov.) belongs to the C. longispinosum species-group (sensu Üstün et al. 2014). Another group, consisting of five species, has only two setae on the outer (exopodal) lobe. There were no Australian species of Cymbasoma with a single lobe. A species group, named after C. agoense, is proposed to include species sharing a globose body and a female fifth leg with a large endopodal lobe and an outer (exopodal) lobe with two setae. The females of the new species of Cymbasoma from Australia can be distinguished from their known congeners by unique combinations of characters including the type of body ornamentation, body size and shape, antennule armature and proportions, the presence of distinctive features of the legs 1-4, the presence/absence of processes on the genital compound somite, and the presence/absence of a constriction of the anal somite. We report the occurrence of two previously described species, C. agoense Sekiguchi, 1982 from Japan and C. bali Desai & Krishnaswamy, 1962 from India in Australian waters. Considering the addition of the 25 new species here described, the number of nominal species of the genus is now 66. A key to the Australian species of Cymbasoma (males and females) and a map showing their occurrence in Australia are also provided.

A database of marine phytoplankton abundance, biomass and species composition in Australian waters.

There have been many individual phytoplankton datasets collected across Australia since the mid 1900s, but most are unavailable to the research community. We have searched archives, contacted researchers, and scanned the primary and grey literature to collate 3,621,847 records of marine phytoplankton species from Australian waters from 1844 to the present. Many of these are small datasets collected for local questions, but combined they provide over 170 years of data on phytoplankton communities in Australian waters. Units and taxonomy have been standardised, obviously erroneous data removed, and all metadata included. We have lodged this dataset with the Australian Ocean Data Network (http://portal.aodn.org.au/) allowing public access. The Australian Phytoplankton Database will be invaluable for global change studies, as it allows analysis of ecological indicators of climate change and eutrophication (e.g., changes in distribution; diatom:dinoflagellate ratios). In addition, the standardised conversion of abundance records to biomass provides modellers with quantifiable data to initialise and validate ecosystem models of lower marine trophic levels.

Zooplankton Growth, Respiration and Grazing on the Australian Margins of the Tropical Indian and Pacific Oceans.

The specific activity of aminoacyl-tRNA synthetases (spAARS), an index of growth rate, and of the electron transport system (spETS), an index of respiration, was measured in three size fractions (73-150 µm, >150 µm and >350 µm) of zooplankton during five cruises to tropical coastal waters of the Kimberley coast (North West Australia) and four cruises to waters of the Great Barrier Reef (GBR; North East Australia). The N-specific biomass of plankton was 3-4-fold higher in the Kimberley than on the GBR in all 3 size classes: Kimberley 1.27, 3.63, 1.94 mg m-3; GBR 0.36, 0.88 and 0.58 mg m-3 in the 73-150 µm, >150 µm and >350 µm size classes, respectively. Similarly, spAARS activity in the Kimberley was greater than that of the GBR: 88.4, 132.2, and 147.6 nmol PPi hr-1 mg protein -1 in the Kimberley compared with 71.7, 82.0 and 83.8 nmol PPi hr-1 mg protein -1 in the GBR, for the 73-150 µm, >150 µm and >350 µm size classes, respectively. Specific ETS activity showed similar differences in scale between the two coasts: 184.6, 148.8 and 92.2 µL O2 hr-1 mg protein-1 in the Kimberley, against 86.5, 88.3 and 71.3 µL O2 hr-1 mg protein-1 in the GBR. On the basis of these measurements, we calculated that >150 µm zooplankton grazing accounted for 7% of primary production in the Kimberley and 8% in GBR waters. Area-specific respiration by >73 µm zooplankton was 7-fold higher in the Kimberley than on the GBR and production by >150 µm zooplankton was of the order of 278 mg C m-2 d-1 in the Kimberley and 42 mg C m-2 d-1 on the GBR. We hypothesize that the much stronger physical forcing on the North West shelf is the principal driver of higher rates in the west than in the east of the continent.

The Australian Monstrilloida (Crustacea: Copepoda) I. Monstrillopsis Sars, Maemonstrilla Grygier & Ohtsuka, and Australomonstrillopsis gen. nov.

Monstrilloid copepods were collected during zooplankton surveys in reef and coastal areas of Australia. Representatives of all four genera of the Monstrilloida (Monstrilla Dana, Monstrillopsis Sars, Cymbasoma Thompson, and Maemonstrilla Grygier & Ohtsuka) were recorded. In this contribution a taxonomic analysis of specimens belonging to the latter two genera is provided, and a new genus described. The genus Monstrillopsis was represented exclusively by male specimens, on the basis of which three new species are described: Mon. hastata sp. nov., Mon. boonwurrungorum sp. nov., and Mon. nanus sp. nov. These are distinguished from each other and previously described species of this genus by details of the genital complex (or genital apparatus), body size, ornamentation of the cephalic surface, number of caudal setae, and characteristic modifications of the fifth antennular segment. All have distinctive characters not associated with sexual modifications, which will ease the task of matching females collected in future studies. Australomonstrillopsis gen. nov. is proposed to accommodate a male specimen with a unique combination of characters including massively developed caudal rami, cephalic perioral protuberances, and absence of an inner seta on the first exopodal segment of legs 1-4, among other characters. The new genus is monotypic and contains A. crassicaudata sp. nov. Three of the four new species of Maemonstrilla (Mae. ohtsukai sp. nov., Mae. hoi sp. nov., and Mae. protuberans sp. nov.) belong to the Mae. hyottoko species group, and the remaining one, Mae. crenulata sp. nov., belongs to the Mae. turgida group. Each of the new species of Maemonstrilla from Australia can be distinguished from its known congeners by a unique combination of characters including the type of body reticulation, body size, antennule and body proportions, distinctive characters of the swimming legs, details of the antennular armature, and the presence/absence of a posteroventral process on the genital compound somite. With the addition of the four new species of Monstrillopsis and the four of Maemonstrilla described herein, the number of species in these genera has increased to 13 and 11 species, respectively. In no case did congeneric species co-occur, hinting that there may be a rich species diversity yet to be discovered within the Australian Monstrilloida.

Tropical marginal seas: priority regions for managing marine biodiversity and ecosystem function.

Tropical marginal seas (TMSs) are natural subregions of tropical oceans containing biodiverse ecosystems with conspicuous, valued, and vulnerable biodiversity assets. They are focal points for global marine conservation because they occur in regions where human populations are rapidly expanding. Our review of 11 TMSs focuses on three key ecosystems-coral reefs and emergent atolls, deep benthic systems, and pelagic biomes-and synthesizes, illustrates, and contrasts knowledge of biodiversity, ecosystem function, interaction between adjacent habitats, and anthropogenic pressures. TMSs vary in the extent that they have been subject to human influence-from the nearly pristine Coral Sea to the heavily exploited South China and Caribbean Seas-but we predict that they will all be similarly complex to manage because most span multiple national jurisdictions. We conclude that developing a structured process to identify ecologically and biologically significant areas that uses a set of globally agreed criteria is a tractable first step toward effective multinational and transboundary ecosystem management of TMSs.

The coral sea: physical environment, ecosystem status and biodiversity assets.

The Coral Sea, located at the southwestern rim of the Pacific Ocean, is the only tropical marginal sea where human impacts remain relatively minor. Patterns and processes identified within the region have global relevance as a baseline for understanding impacts in more disturbed tropical locations. Despite 70 years of documented research, the Coral Sea has been relatively neglected, with a slower rate of increase in publications over the past 20 years than total marine research globally. We review current knowledge of the Coral Sea to provide an overview of regional geology, oceanography, ecology and fisheries. Interactions between physical features and biological assemblages influence ecological processes and the direction and strength of connectivity among Coral Sea ecosystems. To inform management effectively, we will need to fill some major knowledge gaps, including geographic gaps in sampling and a lack of integration of research themes, which hinder the understanding of most ecosystem processes.

Impact of hydrotalcite deposition on biogeochemical processes in a shallow tropical bay.

The biogeochemistry of a tropical shoal bay (Melville Bay, Australia) impacted by the effluent release, precipitation, and deposition of hydrotalcite from an alumina refinery was studied in both wet and dry seasons. Within the deposition zone, sulfate reduction dominated benthic carbon cycling accounting for ≈100% of total microbial activity, with rates greater than those measured in most other marine sediments. These rapid rates of anoxic metabolism resulted in high rates of sulfide and ammonium production and low C:S ratios, implying significant preservation of S in stable sulfide minerals. Rates of total microbial activity were significantly less in control sediments of equivalent grain size, where sulfate reduction accounted for ≈50% of total benthic metabolism. Rates of planktonic carbon cycling overlying the deposition zone were also greater than those measured in the control areas of southern Melville Bay. At the sediment surface, productive algal and cyanobacterial mats helped stabilize the sediment surface and oxidize sulfide to sulfate to maintain a fully oxygenated water-column overlying the impacted zone. The mats utilized a significant fraction of dissolved inorganic N and P released from the sea bed; some nutrients escaped to the water-column such that benthic regeneration of NH4+ and PO4³â» accounted for 100% and 42% of phytoplankton requirements for N and P, respectively. These percentages are high compared to other tropical coastal environments and indicate that benthic nutrient recycling may be a significant factor driving water-column production overlying the deposition zone. With regard to remediation, it is recommended that the sea bed not be disturbed as attempts at removal may result in further environmental problems and would require specific assessment of the proposed removal process.

Seacage aquaculture in a World Heritage Area: the environmental footprint of a Barramundi farm in tropical Australia.

The fate of aquaculture wastes from a seacage farm within a pristine mangrove environment was studied. Seasonal and tidal differences were most important in determining water quality within receiving waters and obscured any nutrient enrichment effect by the farm. Farm wastes added significantly to the N budget status of the creek system, but overall water quality conformed to Queensland EPA Water Quality standards. Mangrove trees throughout the creek system contained (15)N signatures traceable to aquaculture feeds, but the footprint of the farm itself was best indicated by the ratio of Zn:Li in sediments. The creek became hypoxic (<2 mgl(-1)) during wet season low tides. Consequently, we recommended monitoring of water-column oxygen concentrations to warn of hypoxic conditions threatening to fish health, as well as Zn:Li ratios in sediment accumulation zones to determine the area of influence of the farm.