A Device-on-Chip Solution for Real-Time Diffuse Correlation Spectroscopy Using FPGA.

Diffuse correlation spectroscopy (DCS) is a non-invasive technology for the evaluation of blood perfusion in deep tissue. However, it requires high computational resources for data analysis, which poses challenges in its implementation for real-time applications. To address the unmet need, we developed a novel device-on-chip solution that fully integrates all the necessary computational components needed for DCS. It takes the output of a photon detector and determines the blood flow index (BFI). It is implemented on a field-programmable gate array (FPGA) chip including a multi-tau correlator for the calculation of the temporal light intensity autocorrelation function and a DCS analyzer to perform the curve fitting operation that derives the BFI at a rate of 6000 BFIs/s. The FPGA DCS system was evaluated against a lab-standard DCS system for both phantom and cuff ischemia studies. The results indicate that the autocorrelation of the light correlation and BFI from both the FPGA DCS and the reference DCS matched well. Furthermore, the FPGA DCS system was able to achieve a measurement rate of 50 Hz and resolve pulsatile blood flow. This can significantly lower the cost and footprint of the computational components of DCS and pave the way for portable, real-time DCS systems.

FPGA Correlator for Applications in Embedded Smart Devices.

Correlation has a variety of applications that require signal processing. However, it is computationally intensive, and software correlators require high-performance processors for real-time data analysis. This is a challenge for embedded devices because of the limitation of computing resources. Hardware correlators that use Field Programmable Gate Array (FPGA) technology can significantly boost computational power and bridge the gap between the need for high-performance computing and the limited processing power available in embedded devices. This paper presents a detailed FPGA-based correlator design at the register level along with the open-source Very High-Speed Integrated Circuit Hardware Description Language (VHDL) code. It includes base modules for linear and multi-tau correlators of varying sizes. Every module implements a simple and unified data interface for easy integration with standard and publicly available FPGA modules. Eighty-lag linear and multi-tau correlators were built for validation of the design. Three input data sets-constant signal, pulse signal, and sine signal-were used to test the accuracy of the correlators. The results from the FPGA correlators were compared against the outputs of equivalent software correlators and validated with the corresponding theoretical values. The FPGA correlators returned results identical to those from the software references for all tested data sets and were proven to be equivalent to their software counterparts. Their computation speed is at least 85,000 times faster than the software correlators running on a Xilinx MicroBlaze processor. The FPGA correlator can be easily implemented, especially on System on a Chip (SoC) integrated circuits that have processor cores and FPGA fabric. It is the ideal component for device-on-chip solutions in biosensing.

Olfactory responses to explosives associated odorants are enhanced by zinc nanoparticles.

Many odorants related to manufactured explosives have low volatilities and are barely detectable as odors. We previously reported that zinc metal nanoparticles increased rat olfactory epithelium responses, measured by electroolfactogram (EOG), to several odorants. Here, we report that nanomolar concentrations of zinc metal nanoparticles strongly enhanced olfactory responses to the explosives related odorants cyclohexanone, methyl benzoate, acetophenone, and eugenol. Rat olfactory epithelium was exposed to metal nanoparticles and odorant responses were quantified by EOG. Zinc nanoparticles added to explosive odorants strongly increased the odorant response in a dose-dependent manner. The enzymatic breakdown of the second messenger cyclic adenosine monophosphate (cAMP) was prevented by adding the membrane-permeable phosphodiesterase inhibitor 3-isobutyl-1-methylxanthine (IBMX). This caused the olfactory cilia cAMP concentration to increase and generated EOG signals. The EOG responses generated by IBMX were not enhanced by zinc nanoparticles. Based on these observations, we conclude that zinc nanoparticles act at the receptor site and are involved in the initial events of olfaction. Our results suggest that zinc metal nanoparticles can be used to facilitate a canine detection of explosive odorants.

Cysteine S-glycosylation, a new post-translational modification found in glycopeptide bacteriocins.

O-Glycosylation is a ubiquitous eukaryotic post-translational modification, whereas early reports of S-linked glycopeptides have never been verified. Prokaryotes also glycosylate proteins, but there are no confirmed examples of sidechain glycosylation in ribosomal antimicrobial polypeptides collectively known as bacteriocins. Here we show that glycocin F, a bacteriocin secreted by Lactobacillus plantarum KW30, is modified by an N-acetylglucosamine ß-O-linked to Ser18, and an N-acetylhexosamine S-linked to C-terminal Cys43. The O-linked N-acetylglucosamine is essential for bacteriostatic activity, and the C-terminus is required for full potency (IC(50) 2 nM). Genomic context analysis identified diverse putative glycopeptide bacteriocins in Firmicutes. One of these, the reputed lantibiotic sublancin, was shown to contain a hexose S-linked to Cys22.