Identification by culture, PCR, and immunohistochemistry of mycoplasmas and their molecular typing in sheep and lamb lungs with pneumonia in Eastern Turkey.

This study used cultures, polymerase chain reaction (PCR), and immunoperoxidase to examine samples from 216 lungs from sheep and lambs with macroscopic pneumonia lesions for the presence of Mycoplasma species. DNA was extracted from lung tissue samples and broth cultures with the help of a DNA extraction kit and replicated using genus-specific and species-specific primers for mycoplasma. The lung samples were examined by the immunoperoxidase method using hyperimmune Mycoplasma ovipneumoniae serum. The randomly amplified polymorphic DNA (RAPD) test was used for the molecular typing of M. ovipneumoniae isolates. Mycoplasma was isolated in the cultures of 80 (37.03 %) of a total of 216 lung samples. Genus-specific mycoplasma DNA was identified by PCR in 96 (44.44 %) samples in broth cultures and 36 (16.66 %) directly in the lung tissue. Of these 96 cases in which genus-specific identification was made, 57 (59.37 %) were positive for reaction with species-specific primers for M. ovipneumoniae and 31 (32.29 %) for Mycoplasma arginini. The DNA of neither of the latter two species could be identified in the remaining eight samples (8.33 %) where mycoplasma had been identified. As for the immunoperoxidase method, it identified M. ovipneumoniae in 61 of 216 lung samples (28 %). Positive staining was concentrated in the bronchial epithelium cell cytoplasm and cell surface. RAPD analysis resulted in 15 different profiles. Our results suggest that PCR methods could be successfully used in the diagnosis of mycoplasma infections as an alternative to culture method and identifying this agent at the species level.

Genotyping of broiler-originated Campylobacter jejuni and Campylobacter coli isolates using fla typing and random amplified polymorphic DNA methods.

Liver and intestine samples taken from 200 broilers at 20 flocks were inoculated onto Preston Enrichment broth and agar for selective isolation of Campylobacter jejuni and Campylobacter coli. The isolates were identified by both conventional and polymerase chain reaction (PCR) methods. Campylobacter spp. were identified in 102 of 400 samples (200 liver and 200 intestine), 57 (14.25%) of which were identified as C. jejuni and 45 (11.25%) as C. coli. PCR-restriction fragment length polymorphism (RFLP) of the flagellin gene (flaA) and random amplified polymorphic DNA (RAPD) typing were used to describe the heterogeneity among amplified DNA products of C. jejuni and C. coli isolates. Flagellin gene analysis by RFLP of the isolates produced seven different band profiles. On the other hand, five distinct band profiles were obtained in the examination of the isolates with RAPD assay using a random primer (OPA-11). The results of this study demonstrated that a relatively low heterogeneity existed among C. jejuni and C. coli strains isolated from the commercial broiler flocks in eastern Turkey. In the comparison of both typing methods, fla typing provided more discrimination than the RAPD assay used.