Photoreactions of Ozone-Tetrahydrothiophene, Ozone-Pyrrolidine, and Ozone-Thiazolidine Complexes Studied Using Matrix-Isolation IR and Visible Absorption Spectroscopies.

The photoreactions of molecular complexes composed of O3 and three 5-membered heterocyclic compounds, tetrahydrothiophene (THT), pyrrolidine (PyD), and thiazolidine (TAD), are systematically investigated using matrix-isolation infrared (IR) and UV-visible spectroscopies. Two visible-light absorption bands appear in the visible spectra obtained for O3-THT and O3-PyD, whereas four bands are observed for O3-TAD, which contains both N and S atoms in the heterocyclic ring. Upon visible-light irradiation, O3-THT and O3-PyD form their corresponding oxide derivatives, tetrahydrothiophene-1-oxide and pyrrolidine-N-oxide. Although two O3-TAD complexes with different photoreactivities are detected, both structures form thiazolidine-1-oxide upon combining with O and S atom in the heterocyclic ring, but not thiazolidine-N-oxide. The mechanism of formation of these oxide compounds can be explained by the stability of the oxide compound in the triplet state formed via the combination of O(3P) and the paired ring molecule.

Visible-light-Induced Reaction of an Ozone-Trimethylamine Complex Studied by Matrix-Isolation IR and Visible Absorption Spectroscopies.

A visible-light-induced reaction of an O3-trimethylamine (TMA) complex isolated in low-temperature noble-gas matrices is investigated by infrared (IR) and visible absorption spectroscopies using the DFT calculation. The complex isolated in a Ne matrix yields trimethylamine-N-oxide (TMAO) upon irradiation (λ ≥ 800 nm) by dissociation of O3. When the wavelength of radiation is changed to λ = 455 nm, two stable conformers of dimethylaminomethanol (DMAM) are recognized besides TMAO. In an Ar matrix, DMAM and not TMAO is mainly produced upon λ = 455 nm irradiation. The photoreaction mechanism of the O3-TMA complex with a single collision reaction between O(3P) and TMA in the gas phase to produce OH and CH2N(CH3)2 radicals is discussed.

Reversible Photoisomerization among Triplet Amino Naphthylnitrene, Triplet Diimine Biradical, and Indazole: Matrix-Isolation IR Spectra of 8-Amino-1-naphthylnitrene, 1,8-Naphthalenediimine, and 1,2-Dihydrobenz[cd]indazole.

Reaction mechanisms of nitrene, one of the most famous biradicals, have been frequently studied, and many spectral data have been obtained so far. In the present study, the experimental IR spectra of triplet 8-amino-1-naphthylnitrene (3ANN), a triplet diimine biradical 1,8-dihydro-1,8-naphthalenediimine (3DND), and 1,2-dihydrobenz[cd]indazole (DBI), which are produced in the UV photolysis of 1,8-diaminonaphthalene in an Ar matrix and identified by a combination method of IR spectroscopy and DFT quantum chemical calculations, are first reported. 3ANN is found to change to DBI by hydrogen-atom migration with bond making between the two nitrogen atoms upon visible-light irradiation (λ > 580 nm) with its backward reaction caused by 350 nm irradiation. In addition, 3ANN isomerizes to 3DND by 700 nm irradiation, while its backward reaction occurs upon 500 nm irradiation. The wavelength dependences of these photoisomerizations are explained in terms of their electronic transition energies estimated by time-dependent DFT calculations. It is concluded that the novel reversible photoisomerization system among 3ANN, 3DND, and DBI is totally different from the well-known photoisomerization between phenylnitrene and a seven-membered cyclic compound.

Flow-Induced Assembly of Colloidal Liquid Crystalline Nanosheets Toward Unidirectional Macroscopic Structures.

Multiscale structures of anisotropic nanoparticles up to macroscopic scales are important in order to produce practical materials through nanotechnology. As an example of such structures, hierarchical organization of colloidal liquid crystals of niobium oxide nanosheets yields stripe textures observable by naked eyes. The stripes are generated by the growth of liquid crystalline domains (tactoids) and the alignment of the tactoids under an electric field and gravity applied in the directions orthogonal to each other. The nanosheets forming the tactoids are unidirectionally aligned along the flow induced by gravity, and the aligned tactoids are stretched to be connected each other to form the stripes. Time evolution of the stripes indicates that they are generated during the settlement of the nanosheets. The nanosheets are debundled with the settlement, and thus the stripes are gradually degenerated during the settlement. Larger tactoids cause faster nanosheet settlement and stripe degeneration. The electric field applied orthogonally to gravity has roles of pinning the nanosheets to slow down their settlement and retains the stripes for several hours.

Panoscopic organization of anisotropic colloidal structures from photofunctional inorganic nanosheet liquid crystals.

Colloidal liquid crystals of inorganic nanosheets with thickness of around 1 nm and lateral dimensions of several micrometers prepared by exfoliation of a layered niobate are converted to hierarchically organized arrays whose structures are controlled from the nano to macroscopic length scale through the growth of liquid crystalline domains called tactoids as the secondary building blocks followed by controlled application of external fields. Growth of the tactoids is attained by incubation of the liquid crystals at room temperature. The tactoids are then assembled into higher-order structures with characteristic lengths of sub-mm to mm under the simultaneous application of an ac electric field and gravity, whose directions determine the final textural motif of the arrays. Whereas a net-like texture is observed when applying the electric and gravitational forces in the same direction, a striped texture where the nanosheets are unidirectionally aligned is observed when the electric field is applied in the direction perpendicular to gravity. The use of well-grown tactoids is key to the macroscopic structural control. Since the niobate nanosheets have wide band-gap semiconducting nature, the nanosheet stripe arrays exhibit photocatalysis that reflected the alignment of the nanosheets with respect to the polarized direction of impinging light.

Excited-state intramolecular proton transfer and charge transfer in 2-(2'-hydroxyphenyl)benzimidazole crystals studied by polymorphs-selected electronic spectroscopy.

Crystal structures of polymorphs of 2-(2'-hydroxyphenyl)benzimidazole (HPBI), Forms α and ß, are analyzed by X-ray crystallography. The fluorescence excitation (FE) and fluorescence spectra of the polymorphs are separately observed at temperatures 77-298 K. It has been found that the electronic spectra of the two crystal forms are significantly different from each other. Photo-excitation of the enol forms in Forms α and ß induces the excited-state intramolecular proton transfer (ESIPT) to produce the S(1) state of the keto forms. In the FE spectra of Forms α and ß, the S(1) ← S(0) (ππ*) transition of the keto form is observed in the 360-420 nm region in addition to that of the enol form in the 250-420 nm region. In the FE spectrum of Form ß a new band peaking at 305 nm is observed, which is assigned to the S(1) ← S(0) transition of a non-planar enol form based on the observation of dual fluorescence in the UV and visible regions and quantum chemical calculation on the transition energy against the twisted angle between the benzimidazole and hydroxyphenyl rings. The fluorescence quantum yield (φ(T)) for the keto form is remarkably dependent on polymorphs at room temperature; φ(T) = 0.53 for Form α is much larger than φ(T) ≤ 0.23 for Form ß. At 77 K the φ(T) values for Forms α and ß increase to 0.67 and ≤0.57, respectively. The changes in the φ(T) values are associated with the intramolecular charge transfer (ICT) state. The potential barrier height between the S(1)-keto and S(1)-ICT states is significantly lower for Form ß than for Form α. At 77 K the S(1)-keto → S(1)-ICT process followed by S(1)-ICT → S(0)-keto internal conversion is significantly suppressed in Form ß. We compare difference in the dynamics between Forms α and ß in the electronic ground and excited states.

Thermal luminescence spectra of polyamides and their Maillard reaction with reducing sugars.

Thermal luminescence (TL) spectra of polyamides were measured with a Fourier-transform chemiluminescence spectrometer to elucidate the emission mechanism. A TL band of ε-polylysine with a peak at 542 nm observed at 403 K was assigned to the emission due to the interaction of the -CO-NH- group with oxygen molecules by comparison with nylon-6, polyglycine, and polyalanine. When the sample was kept at 453 K, the intensity of the TL band decreased and the wavelength of the peak shifted to 602 nm, which was assigned to the emission due to the interaction of the NH2 group on the side chain with oxygen molecules by comparison with monomeric lysine. A weak emission with a peak at 668 nm was assigned to the advanced glycosylation end products (AGEs) yielded by the Maillard reaction with a catalytic amount of water. To understand this reaction and to examine the TL emission of AGEs, we measured TL spectra of mixtures of polylysine and reducing sugars such as glucose, maltose, lactose, and dextrin. The minimum temperature for TL emission, wavelength of the peak and the relative intensities of the TL emission were found to depend on the size of the sugars.

Infrared and electronic spectra of radicals produced from 2-naphthol and carbazole by UV-induced hydrogen-atom eliminations.

The photoreaction mechanisms of 2-naphthol and carbazole in low-temperature argon matrices have been investigated by infrared and electronic absorption spectroscopy with aids of density-functional-theory (DFT) and time-dependent DFT (TD-DFT) calculations. When the matrix samples were irradiated upon UV light, 2-naphthoxyl and N-carbazolyl radicals were produced by the elimination of the H atom in the O-H group of 2-naphthol and in the N-H group of carbazole, respectively. The observed IR and electronic absorption spectra of the radicals were reproduced satisfactorily by the quantum chemical calculations. To understand a role of the radicals in the excited-state proton transfer (ESPT), the fluorescence and excitation spectra of 2-naphthol and carbazole were measured in aqueous solution at room temperature as well as in the low-temperature argon matrices. It was found that the intensity of the fluorescence emitted from carbazole anion in aqueous solution decreased when oxygen gas was blown into the solution.

Hydrogen-atom tunneling in isomerization around the C-O bond of 2-chloro-6-fluorophenol in low-temperature argon matrixes.

Infrared spectra of 2-chloro-6-fluorophenol in argon matrixes at 20 K revealed the presence of a "Cl-type" isomer, which has the OH···Cl hydrogen bond, but no "F-type" isomer with OH···F bonding, in striking contrast to the existence of both isomers in the gas and liquid phases at room temperature. This finding suggests that the F-type isomer changes to the more stable Cl-type one by hydrogen-atom tunneling in the matrixes. Similar experiments on the OD···X analog species were performed to confirm the tunneling isomerization, resulting in an O-D stretching band of the F-type isomer appearing as well as that of the Cl type, like the spectra reported in the gas and liquid phases. This implies that tunneling migration of the D atom is inhibited in the argon matrix. In addition, UV-induced photoreactions of 2-chloro-6-fluorophenol were studied by a joint use of matrix-isolation IR spectroscopy assisted by density functional theory calculations. It was found that 2-fluorocyclopentadienylidenemethanone and 4-chloro-2-fluorocyclohexadienone were produced from the Cl type; the former was by the Wolff rearrangement after dissociation of the H atom in the OH group and the Cl atom, and the latter was by intramolecular migration of the H and Cl atoms. As for the deuterated F-type isomer, however, 2-chlorocyclopentadienylidenemethanone was produced by the Wolff rearrangement after dissociation of the D atom in the OD group and the F atom, besides other photoproducts of the deuterated Cl-type isomer. It is thus concluded that the tunneling isomerization around the C-O bond occurs in the OH···X species but not in the OD···X species.

Automated specimen search in cryo-TEM observation with DIFF-defocus imaging.

We have developed an automated specimen search algorithm for cryo-electron microscopy imaging of ice-embedded single particles suspended across regularly spaced holes. To maximize the particle visibility under a low electron exposure rate condition, specimen searching is carried out in diffraction mode. However, images in diffraction mode contain significant pincushion distortion, making it difficult to computationally predict the locations of the regularly spaced holes. We have implemented a distortion-correction mechanism to restore the primitive distortion-free image and a correlation-based algorithm to accurately determine the periodicity of the holes. A stage-shift method to optimize positional reproducibility is also implemented. Addition of our algorithms to the JADAS software for automated transmission electron microscopy data acquisition has significantly improved the accuracy of specimen search.