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1.
Biochem Soc Trans ; 34(Pt 6): 1170-2, 2006 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-17073778

RESUMO

P450 (cytochrome P450) enzymes have major roles in the biosynthesis of endogenous factors such as steroids and eicosanoids, in the termination of the action of endogenous factors such as retinoic acid, in the metabolism of most drugs and xenobiotics and in the generation of toxic and carcinogenic products. Understanding the determinants of the substrate and inhibitor specificities of these enzymes is important for drug design. The crystallographic analysis of the deformability of two bacterial P450 active sites associated with the binding of azole (a class of inhibitors with an imidazole or triazole ring that co-ordinates to the haem iron) inhibitors described in the present study illustrates the importance of protein conformational malleability in the binding of imidazole derivatives.


Assuntos
Sistema Enzimático do Citocromo P-450/química , Sistema Enzimático do Citocromo P-450/metabolismo , Imidazóis/farmacologia , Inibidores das Enzimas do Citocromo P-450 , Sistema Enzimático do Citocromo P-450/genética , Inibidores Enzimáticos/farmacologia , Proteínas Recombinantes/antagonistas & inibidores , Proteínas Recombinantes/química , Proteínas Recombinantes/metabolismo
2.
FEBS Lett ; 503(2-3): 135-41, 2001 Aug 17.
Artigo em Inglês | MEDLINE | ID: mdl-11513870

RESUMO

Dynein is a minus end-directed microtubule motor that serves multiple cellular functions. We have performed a fine mapping of the 8 kDa dynein light chain (LC8) binding sites throughout the development of a library of consecutive synthetic dodecapeptides covering the amino acid sequences of the various proteins known to interact with this dynein member according to the yeast two hybrid system. Two different consensus sequences were identified: GIQVD present in nNOS, in DNA cytosine methyl transferase and also in GKAP, where it is present twice in the protein sequence. The other LC8 binding motif is KSTQT, present in Bim, dynein heavy chain, Kid-1, protein 4 and also in swallow. Interestingly, this KSTQT motif is also present in several viruses known to associate with microtubules during retrograde transport from the plasma membrane to the nucleus during viral infection.


Assuntos
Dineínas/metabolismo , Motivos de Aminoácidos , Sequência de Aminoácidos , Animais , Sítios de Ligação , Dineínas do Citoplasma , Dineínas/química , Dineínas/genética , Humanos , Técnicas In Vitro , Microtúbulos/metabolismo , Dados de Sequência Molecular , Óxido Nítrico Sintase/química , Óxido Nítrico Sintase/genética , Óxido Nítrico Sintase/metabolismo , Óxido Nítrico Sintase Tipo I , Mapeamento de Peptídeos , Ligação Proteica , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo , Proteínas Virais/química , Proteínas Virais/genética , Proteínas Virais/metabolismo
3.
J Am Chem Soc ; 123(18): 4243-54, 2001 May 09.
Artigo em Inglês | MEDLINE | ID: mdl-11457190

RESUMO

Solution 1H NMR has been used to assign a major portion of the heme environment and the substrate-binding pocket of resting state horseradish peroxidase, HRP, despite the high-spin iron(III) paramagnetism, and a quantitative interpretive basis of the hyperfine shifts is established. The effective assignment protocol included 2D NMR over a wide range of temperatures to locate residues shifted by paramagnetism, relaxation analysis, and use of dipolar shifts predicted from the crystal structure by an axial paramagnetic susceptibility tensor normal to the heme. The most effective use of the dipolar shifts, however, is in the form of their temperature gradients, rather than by their direct estimation as the difference of observed and diamagnetic shifts. The extensive assignments allowed the quantitative determination of the axial magnetic anisotropy, Deltachi(ax) = -2.50 x 10(-8) m(3)/mol, oriented essentially normal to the heme. The value of Deltachi(ax) together with the confirmed T(-2) dependence allow an estimate of the zero-field splitting constant D = 15.3 cm(-1), which is consistent with pentacoordination of HRP. The solution structure was generally indistinguishable from that in the crystal (Gajhede, M.; Schuller, D. J.; Henriksen, A.; Smith, A. T.; Poulos, T. L. Nature Structural Biology 1997, 4, 1032-1038) except for Phe68 of the substrate-binding pocket, which was found turned into the pocket as found in the crystal only upon substrate binding (Henriksen, A.; Schuller, D. J.; Meno, K.; Welinder, K. G.; Smith, A. T.; Gajhede, M. Biochemistry 1998, 37, 8054-8060). The reorientation of several rings in the aromatic cluster adjacent to the proximal His170 is found to be slow on the NMR time scale, confirming a dense, closely packed, and dynamically stable proximal side up to 55 degrees C. Similar assignments on the H42A-HRP mutant reveal conserved orientations for the majority of residues, and only a very small decrease in Deltachi(ax) or D, which dictates that five-coordination is retained in the mutant. The two residues adjacent to residue 42, Ile53 and Leu138, reorient slightly in the mutant H42A protein. It is concluded that effective and very informative 1H NMR studies of the effect of either substrate binding or mutation can be carried out on resting state heme peroxidases.


Assuntos
Heme/química , Peroxidase do Rábano Silvestre/química , Algoritmos , Substituição de Aminoácidos , Anisotropia , Heme/genética , Peroxidase do Rábano Silvestre/genética , Mutação , Ressonância Magnética Nuclear Biomolecular , Ligação Proteica , Soluções
4.
J Am Chem Soc ; 123(21): 4877-85, 2001 May 30.
Artigo em Inglês | MEDLINE | ID: mdl-11457314

RESUMO

To examine the roles of the proximal thiolate iron ligand, the C357H mutant of P450(cam) (CYP101) was characterized by resonance Raman, UV, circular dichroism, and activity measurements. The C357H mutant must be reconstituted with hemin for activity to be observed. The reconstituted enzyme is a mixture of high and low spin species. Low temperature (10 degrees C), low enzyme concentration (1 microM), high camphor concentration (1 mM), and 5--50 mM buffer concentrations increase the high to low spin ratio, but under no conditions examined was the protein more than 60% high spin. The C357H mutant has a poorer K(m) for camphor (23 vs 2 microM) and a poorer K(d) for putidaredoxin (50 vs 20 microM) than wild-type P450(cam). The mutant also exhibits a greatly decreased camphor oxidation rate, elevated uncoupling rate, and much greater peroxidase activity. Electron transfer from putidaredoxin to the mutant is much slower than to the wild-type even though redox potential measurements show that the electron transfer remains thermodynamically favored. These experiments confirm that the thiolate ligand facilitates the O--O bond cleavage by P450 enzymes and also demonstrate that this ligand satisfies important roles in protein folding, substrate binding, and electron transfer.


Assuntos
Cânfora 5-Mono-Oxigenase/metabolismo , Heme/metabolismo , Compostos de Sulfidrila/metabolismo , Sequência de Bases , Cânfora/metabolismo , Primers do DNA , Heme/química , Peróxido de Hidrogênio/metabolismo , Cinética , Ligantes , Peroxidases/metabolismo , Análise Espectral
5.
J Am Chem Soc ; 123(15): 3412-7, 2001 Apr 18.
Artigo em Inglês | MEDLINE | ID: mdl-11472111

RESUMO

The pressure stability of the thermophilic CYP119 from Sulfolobus solfataricus and its active-site Thr213 and Thr214 mutants was investigated. At 20 degrees C and pH 6.5, the protein undergoes a reversible P450-to-P420 inactivation with a midpoint at 380 MPa and a reaction volume change of -28 mL/mol. The volume of activation of the process was -9.5 mL/mol. The inactivation transition was retarded, and the absolute reaction volume was decreased by increasing temperature or by mutations that decrease the size of the active-site cavity. High pressure affected the tryptophan fluorescence yield, which decreased by about 37% at 480 MPa. The effect was reversible and suggested considerable contraction of the protein. Aerobic decomposition of iron-aryl complexes of the CYP119 T213A mutant under increasing hydrostatic pressure resulted in variation of the N-arylprotoporphyrin-IX regioisomer (N(B):N(A):N(C):N(D)) adduct pattern from 39:47:07:07 at 0.1 MPa to 23:36:14:27 at 400 MPa. Preincubation of the protein at 400 MPa followed by complex formation and decomposition gave the same regioisomer distribution as untreated protein. The results indicate that the protein is reversibly inactivated by pressure, in contrast to the irreversible inactivation of P450(cam) and other P450 enzymes, and that this inactivation process is modulated by changes in the active-site cavity dimensions.


Assuntos
Sistema Enzimático do Citocromo P-450/química , Oxigenases/química , Proteínas Arqueais , Sistema Enzimático do Citocromo P-450/genética , Escherichia coli , Fluorescência , Mutação , Oxigenases/genética , Pressão , Conformação Proteica , Proteínas Recombinantes/química , Espectrofotometria Atômica , Temperatura
6.
J Biol Chem ; 276(19): 15676-87, 2001 May 11.
Artigo em Inglês | MEDLINE | ID: mdl-11297521

RESUMO

The majority of the active site residues of cyanide-inhibited, substrate-bound human heme oxygenase have been assigned on the basis of two-dimensional NMR using the crystal structure of the water-ligated substrate complex as a guide (Schuller, D. J., Wilks, A., Ortiz de Montellano, P. R., and Poulos, T. L. (1999) Nat. Struct. Biol. 6, 860-867). The proximal helix and the N-terminal portion of the distal helix are found to be identical to those in the crystal except that the heme for the major isomer ( approximately 75-80%) in solution is rotated 180 degrees about the alpha-gamma-meso axis relative to the unique orientation in the crystal. The central portion of the distal helix in solution is translated slightly over the heme toward the distal ligand, and a distal four-ring aromatic cluster has moved 1-2 A closer to the heme, which allows for strong hydrogen bonds between the hydroxyls of Tyr-58 and Tyr-137. These latter interactions are proposed to stabilize the closed pocket conducive to the high stereospecificity of the alpha-meso ring opening. The determination of the magnetic axes, for which the major axis is controlled by the Fe-CN orientation, reveals a approximately 20 degrees tilt of the distal ligand from the heme normal in the direction of the alpha-meso bridge, demonstrating that the close placement of the distal helix over the heme exerts control of stereospecificity by both blocking access to the beta, gamma, and delta-meso positions and tilting the axial ligand, a proposed peroxide, toward the alpha-meso position.


Assuntos
Cianetos/farmacologia , Heme Oxigenase (Desciclizante)/química , Heme Oxigenase (Desciclizante)/metabolismo , Sequência de Aminoácidos , Sítios de Ligação , Cristalografia por Raios X , Heme/química , Heme/metabolismo , Heme Oxigenase (Desciclizante)/antagonistas & inibidores , Humanos , Hidrogênio , Ligação de Hidrogênio , Ressonância Magnética Nuclear Biomolecular/métodos , Estrutura Secundária de Proteína , Tirosina , Água
7.
J Biol Chem ; 276(14): 11339-46, 2001 Apr 06.
Artigo em Inglês | MEDLINE | ID: mdl-11139583

RESUMO

Three independent experimental methods, liquid chromatography, denaturing gel electrophoresis with heme staining, and mass spectrometry, establish that the CYP4A class of enzymes has a covalently bound heme group even though the heme is not cross-linked to the protein in other P450 enzymes. Covalent binding has been demonstrated for CYP4A1, -4A2, -4A3, -4A8, and -4A11 heterologously expressed in Escherichia coli. However, the covalent link is also present in CYP4A1 isolated from rat liver and is not an artifact of heterologous expression. The extent of heme covalent binding in the proteins as isolated varies and is substoichiometric. In CYP4A3, the heme is attached to the protein via an ester link to glutamic acid residue 318, which is on the I-helix, and is predicted to be within the active site. This is the first demonstration that a class of cytochrome P450 enzymes covalently binds their prosthetic heme group.


Assuntos
Sistema Enzimático do Citocromo P-450/química , Heme/química , Oxigenases de Função Mista/química , Animais , Catálise , Cromatografia Líquida , Reagentes de Ligações Cruzadas , Citocromo P-450 CYP4A , Sistema Enzimático do Citocromo P-450/genética , Eletroforese , Espectrometria de Massas , Oxigenases de Função Mista/genética , Mutação , Conformação Proteica , Ratos
8.
J Biol Chem ; 275(46): 35999-6006, 2000 Nov 17.
Artigo em Inglês | MEDLINE | ID: mdl-10956654

RESUMO

Cytochrome P450(eryF) (CYP107A1), which hydroxylates deoxyerythronolide B in erythromycin biosynthesis, lacks the otherwise highly conserved threonine that is thought to promote O-O bond scission. The role of this threonine is satisfied in P450(eryF) by a substrate hydroxyl group, making deoxyerythronolide B the only acceptable substrate. As shown here, replacement of Ala(245) by a threonine enables the oxidation of alternative substrates using either H(2)O(2) or O(2)/spinach ferredoxin/ferredoxin reductase as the source of oxidizing equivalents. Testosterone is oxidized to 1-, 11alpha-, 12-, and 16alpha-hydroxytestosterone. A kinetic solvent isotope effect of 2.2 indicates that the A245T mutation facilitates dioxygen bond cleavage. This gain-of-function evidence confirms the role of the conserved threonine in P450 catalysis. Furthermore, a Hill coefficient of 1.3 and dependence of the product distribution on the testosterone concentration suggest that two testosterone molecules bind in the active site, in accord with a published structure of the P450(eryF)-androstenedione complex. P450(eryF) is thus a structurally defined model for the catalytic turnover of multiply bound substrates proposed to occur with CYP3A4. In view of its large active site and defined structure, catalytically active P450(eryF) mutants are also attractive templates for the engineering of novel P450 activities.


Assuntos
Sistema Enzimático do Citocromo P-450/química , Sistema Enzimático do Citocromo P-450/metabolismo , Oxigenases de Função Mista/química , Oxigenases de Função Mista/metabolismo , Mutação/genética , Saccharopolyspora/enzimologia , Testosterona/metabolismo , Treonina/metabolismo , Substituição de Aminoácidos/genética , Proteínas de Bactérias , Catálise , Cromatografia Líquida de Alta Pressão , Sistema Enzimático do Citocromo P-450/genética , Deutério/metabolismo , Eritromicina/análogos & derivados , Eritromicina/metabolismo , Peróxido de Hidrogênio/metabolismo , Hidroxilação , Cinética , Ligantes , Oxigenases de Função Mista/genética , Estrutura Molecular , Oxidantes/metabolismo , Ligação Proteica , Espectrofotometria , Especificidade por Substrato , Testosterona/química , Treonina/genética
9.
J Biol Chem ; 275(44): 34501-7, 2000 Nov 03.
Artigo em Inglês | MEDLINE | ID: mdl-10942763

RESUMO

The human heme oxygenase-1 crystal structure suggests that Gly-139 and Gly-143 interact directly with iron-bound ligands. We have mutated Gly-139 to an alanine, leucine, phenylalanine, tryptophan, histidine, or aspartate, and Gly-143 to a leucine, lysine, histidine, or aspartate. All of these mutants bind heme, but absorption and resonance Raman spectroscopy indicate that the water coordinated to the iron atom is lost in several of the Gly-139 mutants, giving rise to mixtures of hexacoordinate and pentacoordinate ligation states. The active site perturbation is greatest when large amino acid side chains are introduced. Of the Gly-139 mutants investigated, only G139A catalyzes the NADPH-cytochrome P450 reductase-dependent oxidation of heme to biliverdin, but most of them exhibit a new H(2)O(2)-dependent guaiacol peroxidation activity. The Gly-143 mutants, all of which have lost the water ligand, have no heme oxygenase or peroxidase activity. The results establish the importance of Gly-139 and Gly-143 in maintaining the appropriate environment for the heme oxygenase reaction and show that Gly-139 mutations disrupt this environment, probably by displacing the distal helix, converting heme oxygenase into a peroxidase. The principal role of the heme oxygenase active site may be to suppress the ferryl species formation responsible for peroxidase activity.


Assuntos
Glicina/metabolismo , Heme Oxigenase (Desciclizante)/metabolismo , Peroxidases/metabolismo , Heme Oxigenase (Desciclizante)/química , Heme Oxigenase (Desciclizante)/genética , Heme Oxigenase (Desciclizante)/isolamento & purificação , Heme Oxigenase-1 , Humanos , Peróxido de Hidrogênio/metabolismo , Proteínas de Membrana , Mutagênese , Peroxidases/química , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Proteínas Recombinantes/isolamento & purificação , Proteínas Recombinantes/metabolismo , Análise Espectral Raman
10.
J Biol Chem ; 275(40): 31086-92, 2000 Oct 06.
Artigo em Inglês | MEDLINE | ID: mdl-10859321

RESUMO

The structure of the first P450 identified in Archaea, CYP119 from Sulfolobus solfataricus, has been solved in two different crystal forms that differ by the ligand (imidazole or 4-phenylimidazole) coordinated to the heme iron. A comparison of the two structures reveals an unprecedented rearrangement of the active site to adapt to the different size and shape of ligands bound to the heme iron. These changes involve unraveling of the F helix C-terminal segment to extend a loop structure connecting the F and G helices, allowing the longer loop to dip down into the active site and interact with the smaller imidazole ligand. A comparison of CYP119 with P450cam and P450eryF indicates an extensive clustering of aromatic residues may provide the structural basis for the enhanced thermal stability of CYP119. An additional feature of the 4-phenylimidazole-bound structure is a zinc ion tetrahedrally bound by symmetry-related His and Glu residues.


Assuntos
Sistema Enzimático do Citocromo P-450/química , Oxigenases/química , Sulfolobus/enzimologia , Proteínas Arqueais , Sítios de Ligação , Cristalografia por Raios X , Elétrons , Escherichia coli/metabolismo , Glutamina/química , Histidina/química , Imidazóis/química , Íons , Ligantes , Modelos Químicos , Modelos Moleculares , Conformação Proteica , Estrutura Secundária de Proteína , Sais/química , Estereoisomerismo , Temperatura , Treonina/química , Zinco/química
11.
J Biol Chem ; 275(19): 14112-23, 2000 May 12.
Artigo em Inglês | MEDLINE | ID: mdl-10799487

RESUMO

CYP119 from Sulfolobus solfataricus, the first thermophilic cytochrome P450, is stable at up to 85 degrees C. UV-visible and resonance Raman show the enzyme is in the low spin state and only modestly shifts to the high spin state at higher temperatures. Styrene only causes a small spin state shift, but T(1) NMR studies confirm that styrene is bound in the active site. CYP119 catalyzes the H(2)O(2)-dependent epoxidation of styrene, cis-beta-methylstyrene, and cis-stilbene with retention of stereochemistry. This catalytic activity is stable to preincubation at 80 degrees C for 90 min. Site-specific mutagenesis shows that Thr-213 is catalytically important and Thr-214 helps to control the iron spin state. Topological analysis by reaction with aryldiazenes shows that Thr-213 lies above pyrrole rings A and B and is close to the iron atom, whereas Thr-214 is some distance away. CYP119 is very slowly reduced by putidaredoxin and putidaredoxin reductase, but these proteins support catalytic turnover of the Thr-214 mutants. Protein melting curves indicate that the thermal stability of CYP119 does not depend on the iron spin state or the active site architecture defined by the threonine residues. Independence of thermal stability from active site structural factors should facilitate the engineering of novel thermostable catalysts.


Assuntos
Sistema Enzimático do Citocromo P-450/metabolismo , Oxigenases/metabolismo , Sulfolobus/enzimologia , Sequência de Aminoácidos , Proteínas Arqueais , Sequência de Bases , Sítios de Ligação , Catálise , Cromatografia Gasosa , Sistema Enzimático do Citocromo P-450/química , Sistema Enzimático do Citocromo P-450/genética , Primers do DNA , Eletroforese em Gel de Poliacrilamida , Estabilidade Enzimática , Oxigenases/química , Oxigenases/genética , Homologia de Sequência de Aminoácidos , Análise Espectral , Treonina/genética , Treonina/metabolismo
12.
J Biol Inorg Chem ; 5(2): 204-12, 2000 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-10819465

RESUMO

CYP119, the first thermophilic P450 enzyme, reacts much more slowly than CYP101 (P450cam) with aryldiazenes to give sigma-bonded aryl-iron complexes. The CYP119 complexes are stable anaerobically at 80 degrees C but are readily oxidized by O2 to give the N-arylprotoporphyrin IX regioisomers. The aryl shift can also be initiated in the absence of O2 by K3Fe(CN)6. In contrast, the corresponding CYP101 complexes are insensitive to O2 but decompose at temperatures above 50 degrees C owing to denaturation of the protein. The rate of the CYP119 aryl shift is decreased by electron-withdrawing substituents, with rho = -1.50 for both the O2- and K3Fe(CN)6-dependent reactions. A similar dependence (rho = -0.90) is observed for the K3Fe(CN)6-dependent CYP101 shift. The enthalpies and entropies of activation suggest that the CYP119 and CYP101 K3Fe(CN)6-mediated reactions are similar, but the CYP119 O2-dependent reaction proceeds via a different transition state. In all cases, the rate-determining step is oxidation of the aryl-iron complex. The temperature dependence of the O2- and K3Fe(CN)6-dependent CYP119 shifts provides evidence for temperature-dependent equilibration of two active site conformations. The oxygen sensitivity of the CYP119 aryl-iron complexes, and the temperature dependence of their rearrangement, reflect the unique active site properties of this thermophilic P450 enzyme.


Assuntos
Sistema Enzimático do Citocromo P-450/química , Ferro/química , Oxigenases/química , Aerobiose , Proteínas Arqueais , Ferricianetos/química , Iminas/química , Indicadores e Reagentes , Oxirredução , Protoporfirinas/química , Espectrofotometria Ultravioleta , Temperatura
13.
J Biol Chem ; 275(25): 18801-9, 2000 Jun 23.
Artigo em Inglês | MEDLINE | ID: mdl-10766746

RESUMO

The peroxiredoxin AhpC from Mycobacterium tuberculosis has been expressed, purified, and characterized. It differs from other well characterized AhpC proteins in that it has three rather than one or two cysteine residues. Mutagenesis studies show that all three cysteine residues are important for catalytic activity. Analysis of the M. tuberculosis genome identified a second protein, AhpD, which has no sequence identity with AhpC but is under the control of the same promoter. This protein has also been cloned, expressed, purified, and characterized. AhpD, which has only been identified in the genomes of mycobacteria and Streptomyces viridosporus, is shown here to also be an alkylhydroperoxidase. The endogenous electron donor for catalytic turnover of the two proteins is not known, but both can be turned over with AhpF from Salmonella typhimurium or, particularly in the case of AhpC, with dithiothreitol. AhpC and AhpD reduce alkylhydroperoxides more effectively than H(2)O(2) but do not appear to interact with each other. These two proteins appear to be critical elements of the antioxidant defense system of M. tuberculosis and may be suitable targets for the development of novel anti-tuberculosis strategies.


Assuntos
Antioxidantes/metabolismo , Proteínas de Bactérias/metabolismo , Mycobacterium tuberculosis/metabolismo , Peroxidases/metabolismo , Proteínas de Bactérias/química , Sequência de Bases , Catálise , Primers do DNA , Ditiotreitol/metabolismo , Oxirredução , Peroxidases/química , Peroxirredoxinas , Conformação Proteica , Especificidade por Substrato
14.
Biochemistry ; 39(16): 4684-91, 2000 Apr 25.
Artigo em Inglês | MEDLINE | ID: mdl-10769124

RESUMO

All parasitic protozoa lack the ability to synthesize purine nucleotides de novo, relying instead on purine salvage enzymes for their survival. Hypoxanthine-guanine-xanthine phosphoribosyltransferase (HGXPRT) from the protozoan parasite Tritrichomonas foetus is a rational target for antiparasitic drug design because it is the primary enzyme the parasite uses to salvage purine bases from the host. The study presented here is a continuation of our efforts to use the X-ray structure of the T. foetus HGXPRT-GMP complex to design compounds that bind tightly to the purine pocket of HGXPRT. The goal of the current project was to improve the affinity and selectivity of previously identified HGXPRT inhibitor TF1 [4-(3-nitroanilino)phthalic anhydride]. A virtual library of substituted 4-phthalimidocarboxanilides was constructed using methods of structure-based drug design, and was implemented synthetically on solid support. Compound 20 [(4'-phthalimido)carboxamido-3-benzyloxybenzene] was then used as a secondary lead for the second round of combinatorial chemistry, producing a number of low-micromolar inhibitors of HGXPRT. One of these compounds, TF2 [(4'-phthalimido)carboxamido-3-(4-bromobenzyloxy)benzene], was further characterized as a competitive inhibitor of T. foetus HGXPRT with respect to guanine with a K(I) of 0.49 microM and a 30-fold selectivity over the human HGPRT. TF2 inhibited the growth of cultured T. foetus cells in a concentration-dependent manner with an ED(50) of 2.8 microM, and this inhibitory effect could be reversed by addition of exogenous hypoxanthine. These studies underscore the efficiency of combining structure-based drug design with combinatorial chemistry to produce effective species-specific enzyme inhibitors of medicinal importance.


Assuntos
Técnicas de Química Combinatória , Desenho de Fármacos , Inibidores Enzimáticos/química , Inibidores Enzimáticos/farmacologia , Pentosiltransferases/antagonistas & inibidores , Tritrichomonas foetus/enzimologia , Anilidas/síntese química , Anilidas/química , Anilidas/metabolismo , Anilidas/farmacologia , Animais , Ligação Competitiva , Divisão Celular/efeitos dos fármacos , Células Cultivadas , Inibidores Enzimáticos/síntese química , Humanos , Hipoxantina/química , Hipoxantina/metabolismo , Hipoxantina/farmacologia , Concentração Inibidora 50 , Modelos Moleculares , Mimetismo Molecular , Pentosiltransferases/química , Pentosiltransferases/metabolismo , Ftalimidas/síntese química , Ftalimidas/química , Ftalimidas/metabolismo , Ftalimidas/farmacologia , Ligação Proteica , Software , Especificidade por Substrato , Tritrichomonas foetus/citologia , Tritrichomonas foetus/efeitos dos fármacos
15.
Biochem Biophys Res Commun ; 270(1): 199-202, 2000 Apr 02.
Artigo em Inglês | MEDLINE | ID: mdl-10733927

RESUMO

Incubation of myeloperoxidase (MPO) with H(2)O(2) in the presence of the spin trap DBNBS (3,5-dibromo-4-nitrosobenzenesulfonic acid) results in the EPR-detectable formation of a partially immobilized protein radical. The radical was only formed in the presence of both MPO and H(2)O(2), indicating that catalytic turnover of the protein is required. The changes in the EPR spectrum of the adduct upon treatment with pronase confirm that the spin trap is bound to a protein residue. These results establish that MPO, like lactoperoxidase [Lardinois, O. M., Medzihradszky, K. F., and Ortiz de Montellano, P. R. (1999) J. Biol. Chem. 274, 35441-35448], reacts with H(2)O(2) to give a protein radical intermediate. The protein radical may have a catalytic role, may be related to covalent binding of the prosthetic heme group to the protein, or may reflect a process that leads to inactivation of the enzyme.


Assuntos
Peroxidase/metabolismo , Benzenossulfonatos , Espectroscopia de Ressonância de Spin Eletrônica , Radicais Livres , Humanos , Modelos Químicos , Neutrófilos/enzimologia , Compostos Nitrosos , Peroxidase/química , Detecção de Spin
16.
J Biol Chem ; 275(8): 5297-307, 2000 Feb 25.
Artigo em Inglês | MEDLINE | ID: mdl-10681502

RESUMO

Heme oxygenase converts heme to biliverdin, iron, and CO in a reaction with two established intermediates, alpha-meso-hydroxyheme and verdoheme. Transient kinetic studies show that the conversion of Fe(3+)-heme to Fe(3+)-verdoheme is biphasic. Electron transfer to the heme (0.11 s(-1) at 4 degrees C and 0.49 s(-1) at 25 degrees C) followed by rapid O(2) binding yields the ferrous dioxy complex. Transfer of an electron (0.056 s(-1) at 4 degrees C and 0.21 s(-1) at 25 degrees C) to this complex triggers the formation of alpha-meso-hydroxyheme and its subsequent O(2)-dependent fragmentation to Fe(3+)-verdoheme. The conversion of Fe(3+)-verdoheme to Fe(3+)-biliverdin is also biphasic. Thus, reduction of Fe(3+) to Fe(2+)-verdoheme (0.15 s(-1) at 4 degrees C and 0.55 s(-1) at 25 degrees C) followed by O(2) binding and an electron transfer produces Fe(3+)-biliverdin (0.025 s(-1) at 4 degrees C and 0.10 s(-1) at 25 degrees C). The conversion of Fe(3+)-biliverdin to free biliverdin is triphasic. Reduction of Fe(3+)-biliverdin (0.035 s(-1) at 4 degrees C and 0.15 s(-1) at 25 degrees C), followed by rapid release of Fe(2+) (0.19 s(-1) at 4 degrees C and 0.39 s(-1) at 25 degrees C), yields the biliverdin-enzyme complex from which biliverdin slowly dissociates (0.007 s(-1) at 4 degrees C and 0.03 s(-1) at 25 degrees C). The rate of Fe(2+) release agrees with the rate of Fe(3+)-biliverdin reduction. Fe(2+) release clearly precedes biliverdin dissociation. In the absence of biliverdin reductase, biliverdin release is the rate-limiting step, but in its presence biliverdin release is accelerated and the overall rate of heme degradation is limited by the conversion of Fe(2+)-verdoheme to the Fe(3+)-biliverdin.


Assuntos
Biliverdina/metabolismo , Heme Oxigenase (Desciclizante)/metabolismo , Heme/análogos & derivados , Heme/metabolismo , Animais , Compostos Férricos/metabolismo , Heme Oxigenase-1 , Humanos , Cinética , Fígado/enzimologia , Proteínas de Membrana , Modelos Químicos , Ratos , Espectrometria de Fluorescência , Temperatura , Fatores de Tempo
17.
Arch Biochem Biophys ; 373(1): 63-71, 2000 Jan 01.
Artigo em Inglês | MEDLINE | ID: mdl-10620324

RESUMO

The substrate and regiospecificities of the known CYP4A enzymes from rat (CYP4A1, -4A2, -4A3, and -4A8) and human (CYP4A11) have been determined using lauric (C12), myristic (C14), palmitic (C16), oleic (C18:1), and arachidonic (C20:4) acids. The CYP4A2 and CYP4A8 cDNAs required to complete the enzyme set were cloned from a rat kidney library. All five proteins were expressed in Escherichia coli and were purified with the help of a six-histidine tag at the carboxyl terminus. Two complementary CYP4A2-CYP4A3 chimeras fused at residue 119 (CYP4A2) and 122 (CYP4A3) were constructed to explore the roles of the 18 amino acid differences between the parent proteins in determining their catalytic profiles. The chimera in which the first 119 amino acids are from CYP4A2 indicates that the first 120 amino acids control the substrate specificity. The chimera in which the first 122 amino acids are from CYP4A3 is inactive due to a defect in electron transfer to the heme group. The highest activity for lauric acid was obtained with CYP4A1 and CYP4A8, but for all the proteins the activity decreased with increasing fatty acid chain length. The fact that none of the rat and human CYP4A enzymes exhibits a high activity with arachidonic acid appears to limit their role as catalysts for the physiologically important conversion of arachidonic acid to 20-hydroxyeicosatetraenoic acid (20-HETE).


Assuntos
Sistema Enzimático do Citocromo P-450/química , Sistema Enzimático do Citocromo P-450/metabolismo , Oxigenases de Função Mista/química , Oxigenases de Função Mista/metabolismo , Sequência de Aminoácidos , Animais , Sequência de Bases , Domínio Catalítico/genética , Citocromo P-450 CYP4A , Sistema Enzimático do Citocromo P-450/genética , Primers do DNA/genética , Escherichia coli/genética , Ácidos Graxos , Humanos , Técnicas In Vitro , Isoenzimas/química , Isoenzimas/genética , Isoenzimas/metabolismo , Oxigenases de Função Mista/genética , Modelos Moleculares , Dados de Sequência Molecular , Conformação Proteica , Ratos , Proteínas Recombinantes de Fusão/química , Proteínas Recombinantes de Fusão/genética , Proteínas Recombinantes de Fusão/metabolismo , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo , Homologia de Sequência de Aminoácidos , Espectrofotometria , Especificidade por Substrato
18.
J Biol Chem ; 274(50): 35441-8, 1999 Dec 10.
Artigo em Inglês | MEDLINE | ID: mdl-10585414

RESUMO

Lactoperoxidase (LPO) reacts with H(2)O(2) to sequentially give two Compound I intermediates: the first with a ferryl (Fe(IV)=O) species and a porphyrin radical cation, and the second with the same ferryl species and a presumed protein radical. However, little actual evidence is available for the protein radical. We report here that LPO reacts with the spin trap 3,5-dibromo-4-nitroso-benzenesulfonic acid to give a 1:1 protein-bound radical adduct. Furthermore, LPO undergoes the H(2)O(2)-dependent formation of dimeric and trimeric products. Proteolytic digestion and mass spectrometric analysis indicates that the dimer is held together by a dityrosine link between Tyr-289 in each of two LPO molecules. The dimer retains full catalytic activity and reacts to the same extent with the spin trap, indicating that the spin trap reacts with a radical center other than Tyr-289. The monomeric protein recovered from incubations of LPO with H(2)O(2) is fully active but no longer forms dimers when incubated with H(2)O(2), clear evidence that it has also been structurally modified. Myeloperoxidase, a naturally dimeric protein, and eosinophil peroxidase do not undergo H(2)O(2)-dependent oligomerization. Analysis of the interface in the LPO dimers indicates that the same protein surface is involved in LPO dimerization as in the normal formation of myeloperoxidase dimers. Oligomerization of LPO alters its physical properties and may alter its ability to interact with macromolecular substrates.


Assuntos
Benzenossulfonatos/farmacologia , Lactoperoxidase/química , Lactoperoxidase/metabolismo , Compostos Nitrosos/farmacologia , Animais , Bovinos , Cromatografia Líquida de Alta Pressão , Reagentes de Ligações Cruzadas , Cristalografia por Raios X , Espectroscopia de Ressonância de Spin Eletrônica , Eletroforese em Gel de Poliacrilamida , Radicais Livres , Peróxido de Hidrogênio/metabolismo , Lactoperoxidase/isolamento & purificação , Substâncias Macromoleculares , Modelos Moleculares , Peso Molecular , Conformação Proteica , Estrutura Secundária de Proteína , Espectrometria de Fluorescência , Espectrometria de Massas por Ionização e Dessorção a Laser Assistida por Matriz , Marcadores de Spin
19.
Nat Struct Biol ; 6(9): 860-7, 1999 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-10467099

RESUMO

Heme oxygenase catalyzes the first step in the oxidative degradation of heme. The crystal structure of heme oxygenase-1 (HO-1) reported here reveals a novel helical fold with the heme sandwiched between two helices. The proximal helix provides a heme iron ligand, His 25. Conserved glycines in the distal helix near the oxygen binding site allow close contact between the helix backbone and heme in addition to providing flexibility for substrate binding and product release. Regioselective oxygenation of the alpha-meso heme carbon is due primarily to steric influence of the distal helix.


Assuntos
Heme Oxigenase (Desciclizante)/química , Heme Oxigenase (Desciclizante)/metabolismo , Heme/metabolismo , Sítios de Ligação , Cristalografia por Raios X , Glicina/química , Glicina/metabolismo , Heme/química , Heme Oxigenase-1 , Histidina/química , Histidina/metabolismo , Humanos , Ferro/química , Ferro/metabolismo , Ligantes , Proteínas de Membrana , Modelos Moleculares , Dados de Sequência Molecular , Oxigênio/metabolismo , Fragmentos de Peptídeos/química , Fragmentos de Peptídeos/metabolismo , Maleabilidade , Conformação Proteica , Dobramento de Proteína , Estrutura Secundária de Proteína , Solventes , Eletricidade Estática , Especificidade por Substrato
20.
Biochemistry ; 38(33): 10808-13, 1999 Aug 17.
Artigo em Inglês | MEDLINE | ID: mdl-10451377

RESUMO

We report solid-state deuterium magic angle spinning NMR spectra of perdeuterated adamantane bound to the active site of microcrystalline cytochrome P450cam (CP450cam) in its resting state. CP450cam contains a high-spin ferric (Fe3+) heme in the resting state; the isotropic shift was displaced from the diamagnetic value and varied with temperature consistent with Curie-law dependence. A nondeuterated competitive tighter binding ligand, camphor, was used to displace the adamantane-bound species. This addition resulted in the disappearance of the hyperfine-shifted signal associated with a perdeuterated adamantane bound to CP450cam, while signals presumably associated with adamantane bound to other cavities persisted. We simulated the deuterium spinning side-band intensities for the enzyme-bound species using dipolar hyperfine coupling as the only anisotropic interaction; the deuterium quadrupolar interaction was apparently averaged due to a fast high-symmetry motion. These data provide direct support for previous proposals that substrates are conformationally mobile on the time scale of enzymatic turnover. The simulations suggested that the adamantane binds with an average metal-deuterium distance of 6.2 (+/-0.2) A, corresponding to a dipolar coupling constant of 6.5 (+/-0.5) kHz.


Assuntos
Sistema Enzimático do Citocromo P-450/química , Deutério , Adamantano/química , Adamantano/metabolismo , Sítios de Ligação , Ligação Competitiva , Cânfora/química , Cânfora/metabolismo , Catálise , Sistema Enzimático do Citocromo P-450/metabolismo , Deutério/metabolismo , Ligantes , Modelos Moleculares , Ressonância Magnética Nuclear Biomolecular/métodos , Especificidade por Substrato
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