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The utility of a universal DNA 'barcode' fragment (658 base pairs of the Cytochrome C Oxidase I [COI] gene) has been established as a useful tool for species identification, and widely criticized as one for understanding the evolutionary history of a group. Large amounts of COI sequence data have been produced that hold promise for rapid species identification, for example, for biosecurity. The fruit fly tribe Dacini holds about a thousand species, of which 80 are pests of economic concern. We generated a COI reference library for 265 species of Dacini containing 5601 sequences that span most of the COI gene using circular consensus sequencing. We compared distance metrics versus monophyly assessments for species identification and although we found a 'soft' barcode gap around 2% pairwise distance, the exceptions to this rule dictate that a monophyly assessment is the only reliable method for species identification. We found that all fragments regularly used for Dacini fruit fly identification >450 base pairs long provide similar resolution. 11.3% of the species in our dataset were non-monophyletic in a COI tree, which is mostly due to species complexes. We conclude with recommendations for the future generation and use of COI libraries. We revise the generic assignment of Dacus transversus stat. rev. Hardy 1982, and Dacus perpusillus stat. rev. Drew 1971 and we establish Dacus maculipterus White 1998 syn. nov. as a junior synonym of Dacus satanas Liang et al. 1993.
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Código de Barras de DNA Taxonômico , Complexo IV da Cadeia de Transporte de Elétrons , Animais , Código de Barras de DNA Taxonômico/métodos , Complexo IV da Cadeia de Transporte de Elétrons/genética , Filogenia , Análise de Sequência de DNA/métodos , Tephritidae/genética , Tephritidae/classificaçãoRESUMO
Two planthopper species of the family Nogodinidae are added to the fauna of Vietnam, both from two localities in Thua Thien-Hue Province: Bach Ma National Park and Phong Dien District. The first species belongs to Goniopsarites Meng, Wang & Wang, 2014, G.mientrunganus Constant & Pham, sp. nov., and the second belongs to Pisacha Distant, 1906, P.yinggensis Meng, Wang & Wang, 2014. Pisachayinggensis was previously recorded from Hainan Island, China. These new records greatly extend the distribution of both genera, which were known from southern China, Hainan and North Vietnam, to the south, reaching the mid area of Central Vietnam. Sexual dimorphism is reported in P.yinggensis for the first time. Illustrations of habitus and male terminalia of the new species are given as well as distribution maps and photographs of live specimens and their habitat. The family Nogodinidae now comprises nine species in Vietnam, with three of them present in Bach Ma National Park.
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BACKGROUND: Most skin-related traits have been studied in Caucasian genetic backgrounds. A comprehensive study on skin-associated genetic effects on underrepresented populations such as Vietnam is needed to fill the gaps in the field. OBJECTIVES: We aimed to develop a computational pipeline to predict the effect of genetic factors on skin traits using public data (GWAS catalogs and whole-genome sequencing (WGS) data from the 1000 Genomes Project-1KGP) and in-house Vietnamese data (WGS and genotyping by SNP array). Also, we compared the genetic predispositions of 25 skin-related traits of Vietnamese population to others to acquire population-specific insights regarding skin health. METHODS: Vietnamese cohorts of whole-genome sequencing (WGS) of 1008 healthy individuals for the reference and 96 genotyping samples (which do not have any skin cutaneous issues) by Infinium Asian Screening Array-24 v1.0 BeadChip were employed to predict skin-associated genetic variants of 25 skin-related and micronutrient requirement traits in population analysis and correlation analysis. Simultaneously, we compared the landscape of cutaneous issues of Vietnamese people with other populations by assessing their genetic profiles. RESULTS: The skin-related genetic profile of Vietnamese cohorts was similar at most to East Asian cohorts (JPT: Fst = 0.036, CHB: Fst = 0.031, CHS: Fst = 0.027, CDX: Fst = 0.025) in the population study. In addition, we identified pairs of skin traits at high risk of frequent co-occurrence (such as skin aging and wrinkles (r = 0.45, p = 1.50e-5) or collagen degradation and moisturizing (r = 0.35, p = 1.1e-3)). CONCLUSION: This is the first investigation in Vietnam to explore genetic variants of facial skin. These findings could improve inadequate skin-related genetic diversity in the currently published database.
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Predisposição Genética para Doença , Polimorfismo de Nucleotídeo Único , Pele , População do Sudeste Asiático , Humanos , Estudo de Associação Genômica Ampla , Fenótipo , VietnãRESUMO
Current theory for surface tension-dominant jumps on water, created for small- and medium-sized water strider species and used in bioinspired engineering, predicts that jumping individuals are able to match their downward leg movement speed to their size and morphology such that they maximize the takeoff speed and minimize the takeoff delay without breaking the water surface. Here, we use empirical observations and theoretical modeling to show that large species (heavier than ~80 mg) could theoretically perform the surface-dominated jumps according to the existing model, but they do not conform to its predictions, and switch to using surface-breaking jumps in order to achieve jumping performance sufficient for evading attacks from underwater predators. This illustrates how natural selection for avoiding predators may break the theoretical scaling relationship between prey size and its jumping performance within one physical mechanism, leading to an evolutionary shift to another mechanism that provides protection from attacking predators. Hence, the results are consistent with a general idea: Natural selection for the maintenance of adaptive function of a specific behavior performed within environmental physical constraints leads to size-specific shift to behaviors that use a new physical mechanism that secure the adaptive function.
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Movimento , Água , Humanos , Tamanho Corporal , Tensão Superficial , Fenômenos Biomecânicos , LocomoçãoRESUMO
A list of 10 species from three subfamilies of Tetrigidae from Bach Mã National Park in the province of Thua Thiên-Hue, Vietnam is presented here. Eight of which are new for the national park. Among these, two new species are described: Miriatroides luna Tan & Storozhenko, sp. nov. and Rhopalina bachma Tan & Storozhenko, sp. nov. New synonymy is proposed: Systolederus cinereus Brunner von Wattenwyl, 1893 = Systolederus ridleyi Hancock, 1909, syn. nov. Three species are also recorded in Vietnam for the first time: Tegotettix bufocrocodil (Storozhenko & Dawwrueng, 2015) previously known from Thailand and Cambodia, Zhengitettix albitarsus Storozhenko, 2013 so far considered as endemic to Thailand, and Systolederus cinereus widely distributed in Southeast Asia.
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Gafanhotos , Ortópteros , Animais , Vietnã , Parques RecreativosRESUMO
The new genus Pumatiraciagen. nov. is described to accommodate a new species, P.venosagen. et sp. nov. from Pu Mat National Park in Vietnam. The new genus is placed in the subtribe Parahiraciina of the Parahiraciini. It is compared with the genera Laohiracia Constant, 2021, Macrodarumoides Che, Zhang et Wang, 2012, Pseudochoutagus Che, Zhang et Wang, 2011, and Rostrolatum Che, Zhang et Wang, 2020 with which it shares possessing an elongate head. Illustrations of habitus, details, and male genitalia are given as well as a distribution map and photographs of the habitat. Laohiraciaacuta Constant, 2021 is recorded for the first time from Vietnam, Pu Luong National Park; living specimens and habitat are illustrated, and the distribution map updated. The Parahiraciini fauna of Vietnam now comprises 14 species belonging to 11 genera.
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The cicada species, Hyalessa fuscata and H. maculaticollis(Hemiptera: Cicadidae), share numerous morphological characters, and their status as distinct species remains controversial. We reconstructed a phylogeny based on two new mitogenomes of H. fuscata from Korea and H. maculaticollis from Japan, in combination with GenBank sequences of H. maculaticollis from China and Japan, and other closely related cicada species. Maximum likelihood and Bayesian inference phylogenies showed that H. fuscata from Korea is more closely related to H. maculaticollis from China than either is to H. maculaticollis from Japan. The time-calibrated Bayesian evolutionary analysis by sampling trees (BEAST) phylogeny indicated that the mainland and insular forms diverged approximately 1.7-2.6 million years ago. This coincides with the formation of the East China Sea land bridge between East Asia and the Japanese archipelago, which would provide a dispersal corridor for Hyalessa from the mainland via the Korean peninsula southeastward to Japan. East Asian H. fuscata is a geographic variant that may be considered synonymous with H. maculaticollis.
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Hemípteros , Teorema de Bayes , Filogenia , República da Coreia , Hemípteros/genética , AnimaisRESUMO
Two new planthopper species of the tropiduchid genus Connelicita Wang & Bourgoin, 2015, C.bachmaensis Constant & Pham, sp. nov., and C.phongdienensis Constant & Pham, sp. nov. are described from Bach Ma National Park and from the Centre for Conservation of Vietnam Natural Resources and Rescue of Animals and plants, Phong Dien District in Thua Thien-Hue Province, respectively. These new records greatly extend the distribution of the genus, which was known from southern China (Guangxi) and North Vietnam, to the south, reaching the mid area of Central Vietnam. New records are provided for C.haiphongensis Wang & Zhang, 2015, extending the distribution of the species from Cat Ba Island to a large zone in North Vietnam. Illustrations of habitus, details, and male genitalia are given as well as a distribution map and photographs of the habitat. An identification key to the species of Vietnam is provided. The genus Connelicita now comprises five species.
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Contamination of a genetic sample with DNA from one or more nontarget species is a continuing concern of molecular phylogenetic studies, both Sanger sequencing studies and next-generation sequencing studies. We developed an automated pipeline for identifying and excluding likely cross-contaminated loci based on the detection of bimodal distributions of patristic distances across gene trees. When contamination occurs between samples within a data set, a comparison between a contaminated sample and its contaminant taxon will yield bimodal distributions with one peak close to zero patristic distance. This new method does not rely on a priori knowledge of taxon relatedness nor does it determine the causes(s) of the contamination. Exclusion of putatively contaminated loci from a data set generated for the insect family Cicadidae showed that these sequences were affecting some topological patterns and branch supports, although the effects were sometimes subtle, with some contamination-influenced relationships exhibiting strong bootstrap support. Long tip branches and outlier values for one anchored phylogenomic pipeline statistic (AvgNHomologs) were correlated with the presence of contamination. While the anchored hybrid enrichment markers used here, which target hemipteroid taxa, proved effective in resolving deep and shallow level Cicadidae relationships in aggregate, individual markers contained inadequate phylogenetic signal, in part probably due to short length. The cleaned data set, consisting of 429 loci, from 90 genera representing 44 of 56 current Cicadidae tribes, supported three of the four sampled Cicadidae subfamilies in concatenated-matrix maximum likelihood (ML) and multispecies coalescent-based species tree analyses, with the fourth subfamily weakly supported in the ML trees. No well-supported patterns from previous family-level Sanger sequencing studies of Cicadidae phylogeny were contradicted. One taxon (Aragualna plenalinea) did not fall with its current subfamily in the genetic tree, and this genus and its tribe Aragualnini is reclassified to Tibicininae following morphological re-examination. Only subtle differences were observed in trees after the removal of loci for which divergent base frequencies were detected. Greater success may be achieved by increased taxon sampling and developing a probe set targeting a more recent common ancestor and longer loci. Searches for contamination are an essential step in phylogenomic analyses of all kinds and our pipeline is an effective solution. [Auchenorrhyncha; base-composition bias; Cicadidae; Cicadoidea; Hemiptera; phylogenetic conflict.].
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Hemípteros , Animais , Hemípteros/genética , Sequenciamento de Nucleotídeos em Larga Escala , Insetos/genética , FilogeniaRESUMO
Background: On the basis of molecular dating, Pleistocene glaciations have been proposed as the major driving force of biota speciation in the Palearctic and the pre-Quaternary origin of Amazonian taxa. However, the major driving factors in East Asia remain unclear. All 16 saturniine species inhabiting Taiwan with congeners of populations, subspecies, or species in East Asia constitute research objects for addressing the mode of speciation because of the repeated formation and disappearance of a landbridge from the Asian mainland to Taiwan during glacial cycles. Methods: The genetic divergences of mitochondrial cytochrome c oxidase subunit I (COI) and 16S rDNA and the nuclear 28S rDNA of the saturniine species from Taiwan and the Asian mainland were assessed to determine the monophyly of each genus and species of Saturniinae. Moreover, 519 saturniine COI sequences of 114 taxa from adjacent East and Southeast Asian populations and closely related species were retrieved from GenBank and analyzed. The differentiation timing and possible origination of the insular saturniines were elucidated based on phylogenetic relationships, haplotype networks, and lineage calibrations. Results: Approximately 90% of intraspecific COI divergence was <2%; all divergences exceeding 2% originated from comparisons between allopatric populations or subspecies. Relationship analyses revealed that multiple introductions likely occurred in insular saturniines and that some East Asian saturniines were paraphyletic as deduced by analyzing endemic insular species. Calibration dating revealed that Taiwanese endemic saturniines split from sibling Asian species 0.2-2.7 million years ago (Mya), whereas subspecific-level and population-level splitting events occurred 0.1-1.7 Mya and 0.2-1.2 Mya, respectively. Moreover, phylogenetic patterns combined with geographical distributions revealed that hill-distributed Taiwanese saturniines are closely related to those from southern China and Southeast Asia, whereas saturniines inhabiting altitudes higher than 1,500 m in Taiwan have siblings distributed in temperate Northeast Asia. Discussion: The Global DNA Barcoding Initiative was successfully applied to study the population genetic structure in species. Most Formosan saturniines are distinct and monophyletic, reflecting the vicariant barrier of the Taiwan Strait; Pleistocene glacial cycles provided opportunities for insular saturniines to experience repeated isolation from and secondary contact with the continental mainland. Each insular saturniine may have evolved with a unique differentiation timing pattern that possibly emerged in the Early, Middle, or Late Pleistocene with these patterns differing from the consistent pattern that occurred in the temperate Palearctic and tropical Amazonian regions. Moreover, multiple migrations or artificial genetic admixtures may have also occurred, as suggested by the coexistence of two divergent lineages in a few Taiwanese saturniines.
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Manduca , Mariposas , Animais , Filogenia , Mariposas/genética , DNA Mitocondrial/genética , Evolução Biológica , Ásia Oriental , Manduca/genéticaRESUMO
The species of the genus Cacodaemon of Vietnam are revised. A new species, Cacodaemonvietnamensis sp. nov., is described and C.laotinuslaotinus (Arrow, 1920) is newly recorded from Vietnam. A previously known species, C.proavus Strohecker, 1964 is redescribed based on an additional female specimen and a key to species of the genus Cacodaemon in Vietnam is provided.
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Eighteen xyleborine ambrosia beetles are described and illustrated: Anisandrus proscissus Smith, Beaver, Pham & Cognato sp. nov. (Vietnam), Anisandrus simplex Smith, Beaver & Cognato sp. nov. (Nepal), Arixyleborus belalongi Smith, Beaver & Cognato sp. nov. (Brunei Darussalam), Beaverium brevicaudatus Smith, Beaver & Cognato sp. nov. (Indonesia), Cnestus luculentus Smith, Beaver & Cognato sp. nov. (India), Cyclorhipidion achlys Smith, Beaver, Pham & Cognato sp. nov. (Vietnam), Cyclorhipidion conidentatus Smith, Beaver & Cognato sp. nov. (Indonesia), Cyclorhipidion gladigerum Smith, Beaver & Cognato sp. nov. (Thailand), Cyclorhipidion lapilliferum Smith, Beaver, Pham & Cognato sp. nov. (Vietnam), Cyclorhipidion nepalense Smith, Beaver & Cognato sp. nov. (Nepal), Cyclorhipidion taedulum Smith, Beaver, Pham & Cognato sp. nov. (Vietnam), Cyclorhipidion titorum Smith, Beaver, Pham & Cognato sp. nov. (Vietnam), Euwallacea alastos Smith, Beaver & Cognato sp. nov. (Japan), Leptoxyleborus regina Smith, Beaver & Cognato sp. nov. (Papua New Guinea), Tricosa hipparion Smith, Beaver & Cognato sp. nov. (Malaysia), Xyleborinus acanthopteron Smith, Beaver & Cognato sp. nov. (Thailand), Xyleborinus dumosus Smith, Beaver, Pham & Cognato sp. nov. (Vietnam), Xyleborinus nobuchii Smith, Beaver & Cognato sp. nov. (Japan). New distribution records are reported for 67 Asian species. Cyclorhipidion nemesis Smith & Cognato, described from U. S. A., is reported from Asia (China), its hypothesized native continent, for the first time. Its identity is confirmed with COI and CAD DNA within a phylogenetic analysis including other Cyclorhipidion species.
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Besouros , Gorgulhos , Animais , Papua Nova Guiné , Japão , FilogeniaRESUMO
Exotic diseases and pests of trees have caused continental-scale disturbances in forest ecosystems and industries, and their invasions are considered largely unpredictable. We tested the concept of preinvasion assessment of not yet invasive organisms, which enables empirical risk assessment of potential invasion and impact. Our example assesses fungi associated with Old World bark and ambrosia beetles and their potential to impact North American trees. We selected 55 Asian and European scolytine beetle species using host use, economic, and regulatory criteria. We isolated 111 of their most consistent fungal associates and tested their effect on four important southeastern American pine and oak species. Our test dataset found no highly virulent pathogens that should be classified as an imminent threat. Twenty-two fungal species were minor pathogens, which may require context-dependent response for their vectors at North American borders, while most of the tested fungi displayed no significant impact. Our results are significant in three ways; they ease the concerns over multiple overseas fungus vectors suspected of heightened potential risk, they provide a basis for the focus on the prevention of introduction and establishment of species that may be of consequence, and they demonstrate that preinvasion assessment, if scaled up, can support practical risk assessment of exotic pathogens.
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Besouros , Árvores , Animais , Besouros/microbiologia , Besouros/fisiologia , Ecossistema , Fungos/fisiologia , Casca de Planta , Doenças das Plantas/microbiologia , Árvores/microbiologiaRESUMO
Females of the East Asian velvet-ant genus Andreimyrme Lelej, 1995 are reviewed. The genus definition is extended to accommodate A. borkenti (Williams, 2019), comb. nov. (from Smicromyrme Thomson, 1870), and nine new species: A. auricoma Okayasu, sp. nov. (Malaysia), A. laminatihumeralis Okayasu, sp. nov. (Indonesia, Malaysia), A. matsumotoi Okayasu, sp. nov. (Vietnam), A. naturalis Williams, sp. nov. (Indonesia), A. rong Williams, sp. nov. (Thailand, Vietnam), A. silvorientalis Okayasu, sp. nov. (Indonesia), A. takensis Okayasu, sp. nov. (Thailand), A. ursasolaris Williams, sp. nov. (Indonesia), and A. yotoi Okayasu, sp. nov. (Laos, Vietnam). Diagnoses, distributional records, and illustrations are provided for these and four previously recognized species, A. neaera (Mickel, 1935), A. paniya Terine, Lelej Girish Kumar, 2021, A. sarawakensis Lelej, 1996, and A. substriolata (Chen, 1957). Andreimyrme borkenti is newly recorded from Vietnam. A key to species known from females is provided. Habitat preference of this genus is discussed based on collecting records.
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Himenópteros , Animais , FemininoRESUMO
The following six new Oecetis species have been described and illustrated: O. lata, O. gretae, O. malickyi, O. porntipae, O. olahi, and O. hageni. The following three Oecetis species are recorded for the first time from Vietnam: O. maron Malicky Chantaramongkol 2005 (in Malicky 2005), O. iakchos Malicky 2005, and O. jachin Malicky Mey 2010 (in Malicky 2010a). We present new records of the following six Oecetis species that are previously known from Vietnam: O. raghava Schmid 1995, O. biramosa Martynov 1936, O. tripunctata (Fabricius 1793), O. meleagros Malicky Thani 2005, O. asmada Malicky 1979, and O. empusa Malicky Chaibu 2000. A map presents the distribution of the Oecetis species included in this report.
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Insetos , Animais , Holometábolos , VietnãRESUMO
Worldwide pollinator declines have dramatically increased our need to survey and monitor pollinator distributions and abundances. The giant honey bee, Apis laboriosa, is one of the important pollinators at higher altitudes of the Himalayas. This species has a restricted distribution along the Himalayas and neighbouring mountain ranges of Asia. Previous assessments of its distribution, published more than 20 years ago, were based on museum specimens. Since then, 244 additional localities have been revealed through field trips by the authors, publications, and websites. We present a revised distribution for A. laboriosa that better defines its range and extends it eastward to the mountains of northern Vietnam, southward along the Arakan Mountains to west-central Myanmar, into the Shillong Hills of Meghalaya, India, and northwestward in Uttarakhand, India. This species is generally found at elevations between 1000-3000 m a.s.l.. In northeastern India A. laboriosa colonies occur during summer at sites as low as 850 m a.s.l. and some lower elevation colonies maintain their nests throughout the winter. Finally, we report three regions in Arunachal Pradesh, India, and nine locations in northern Vietnam, where we observed workers of A. laboriosa and A. dorsata foraging sympatrically; their co-occurrence supports the species status of Apis laboriosa.
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The first record of the genus Sinotympana Lee, 2009 from Vietnam is presented. Sinotympana caobangensis sp. nov. (Hemiptera: Cicadidae) from Phia Oac-Phia Den National Park, Cao Bang Province, northern Vietnam is described as new. Photographs of an adult male, illustrations of the male genitalia, a distribution map and biological data for Sinotympana caobangensis sp. nov. are provided.
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Hemípteros , Distribuição Animal , Estruturas Animais , Animais , Tamanho Corporal , Masculino , Tamanho do Órgão , VietnãRESUMO
A new species of cicada, Orientopsaltria dongnaiensis sp. nov., (Hemiptera: Cicadidae) is described from southern Vietnam. Photos of the adult, illustrations of the male genitalia, a distribution map and biological data are provided.
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Hemípteros , Distribuição Animal , Animais , Masculino , VietnãRESUMO
The redbay ambrosia beetle, Xyleborus glabratus Eichhoff, is native to Southeast Asia, where it specializes on Lauraceae trees. It forms a symbiosis with the ambrosia fungus Raffaelea lauricola T.C. Harr., Fraedrich & Aghayeva, which can act as a pathogen in living host trees. The beetle and fungus were recently introduced into the United States, where they have killed millions of native Lauraceae trees and threaten the avocado industry. These introduced populations have limited genetic variation. In the native range, the fungi are genetically variable, but the native genetic variability of the beetles is unknown. It is important to assess the beetle's native genetic variation because different lineages may vary in the capacity to vector this fungus, which may affect disease etiology. Here, we analyzed genetic variation in several Chinese, Taiwanese, and Vietnamese populations of X. glabratus using mitochondrial (COI) and nuclear DNA (CAD) markers. Phylogenetic analysis revealed nine COI haplotypes and four CAD genotypes. Uncorrected 'p' distance for intrapopulation comparisons ranged from 0 to 0.1 and 0 to 0.013 and interpopulation comparisons ranged from 0.137 to 0.168 and 0.015 to 0.032 for COI and CAD, respectively. Two populations exceeded the range of intraspecific nucleotide differences for both genes. Given that individuals from these populations also exhibited consistent morphological differences, they are described as two new species: Xyleborus insidiosus Cognato & Smith, n. sp. and Xyleborus mysticulus Cognato & Smith, n. sp. Xyleborus glabratus was redescribed and a lectotype was designated to facilitate its recognition in light of these new species. These results indicate that X. glabratus is genetically variable and is related to two morphologically similar species. Whether these new species and X. glabratus lineages associate with different fungal strains is unknown. Given that the biology and host colonization of these new species are unknown, preventing their introduction to other regions is prudent.