Isotopic tracing reveals single-cell assimilation of a macroalgal polysaccharide by a few marine Flavobacteria and Gammaproteobacteria.

Algal polysaccharides constitute a diverse and abundant reservoir of organic matter for marine heterotrophic bacteria, central to the oceanic carbon cycle. We investigated the uptake of alginate, a major brown macroalgal polysaccharide, by microbial communities from kelp-dominated coastal habitats. Congruent with cell growth and rapid substrate utilization, alginate amendments induced a decrease in bacterial diversity and a marked compositional shift towards copiotrophic bacteria. We traced 13C derived from alginate into specific bacterial incorporators and quantified the uptake activity at the single-cell level, using halogen in situ hybridization coupled to nanoscale secondary ion mass spectrometry (HISH-SIMS) and DNA stable isotope probing (DNA-SIP). Cell-specific alginate uptake was observed for Gammaproteobacteria and Flavobacteriales, with carbon assimilation rates ranging from 0.14 to 27.50 fg C µm-3 h-1. DNA-SIP revealed that only a few initially rare Flavobacteriaceae and Alteromonadales taxa incorporated 13C from alginate into their biomass, accounting for most of the carbon assimilation based on bulk isotopic measurements. Functional screening of metagenomic libraries gave insights into the genes of alginolytic Alteromonadales active in situ. These results highlight the high degree of niche specialization in heterotrophic communities and help constraining the quantitative role of polysaccharide-degrading bacteria in coastal ecosystems.

Sources partitioning in the diet of the shipworm Bankia carinata (J.E. Gray, 1827): An experimental study based on stable isotopes.

Adaptations that allow teredinids to maintain and thrive on wood, a nutritionally unbalanced food, make these marine bivalves remarkable. Capable of filter-feeding, shipworms house endosymbiotic bacteria synthesizing cellulolytic enzymes for digestion of wood carbohydrates and providing nitrogen to their host through nitrogen fixation. To what extent each of these nutrition modes contributes to the shipworm's metabolism remains an open question. In this experimental study, we estimated source partitioning through the determination of δ13C and δ15N values in original biological samples. For this purpose, pieces of common alder (Alnus glutinosa) were immersed at a coastal station of the north-western Mediterranean Sea. The shipworm Bankia carinata infected wood logs and stable isotope mixing models suggested it got most of the carbon and nitrogen it needs from separate sources. From 71 to 77% of the carbon was derived from the digestion of wood carbohydrates, whereas between 42 and 82% of the nitrogen originated from N2 fixation. These first semi-quantitative estimations suggest that the contribution of N2 fixers to nitrogen requirements of this shipworm species is far from incidental.

Impact of ocean acidification and warming on the productivity of a rock pool community.

This study examined experimentally the combined effect of ocean acidification and warming on the productivity of rock pool multi-specific assemblages, composed of coralline algae, fleshy algae, and grazers. Natural rock pool communities experience high environmental fluctuations. This may confer physiological advantage to rock pool communities when facing predicted acidification and warming. The effect of ocean acidification and warming have been assessed at both individual and assemblage level to examine the importance of species interactions in the response of assemblages. We hypothesized that rock pool assemblages have physiological advantage when facing predicted ocean acidification and warming. Species exhibited species-specific responses to increased temperature and pCO2. Increased temperature and pCO2 have no effect on assemblage photosynthesis, which was mostly influenced by fleshy algal primary production. The response of coralline algae to ocean acidification and warming depended on the season, which evidenced the importance of physiological adaptations to their environment in their response to climate change. We suggest that rock pool assemblages are relatively robust to changes in temperature and pCO2, in terms of primary production.

Stable isotope analyses on archived fish scales reveal the long-term effect of nitrogen loads on carbon cycling in rivers.

Stable isotope analysis of organic matter in sediment records has long been used to track historical changes in productivity and carbon cycling in marine and lacustrine ecosystems. While flow dynamics preclude stratigraphic measurements of riverine sediments, such retrospective analysis is important for understanding biogeochemical cycling in running waters. Unique collections of riverine fish scales were used to analyse δ(15) N and δ(13) C variations in the food web of two European rivers that experience different degrees of anthropogenic pressure. Over the past four decades, dissolved inorganic N loading remained low and constant in the Teno River (70°N, Finland); in contrast, N loading increased fourfold in the Scorff River (47°N, France) over the same period. Archived scales of Atlantic salmon parr, a riverine life-stage that feeds on aquatic invertebrates, revealed high δ(15) N values in the Scorff River reflecting anthropogenic N inputs to that riverine environment. A strong correlation between dissolved inorganic N loads and δ(13) C values in fish scales was observed in the Scorff River, whereas no trend was found in the Teno River. This result suggests that anthropogenic N-nutrients enhanced atmospheric C uptake by primary producers and its transfer to fish. Our results illustrate for the first time that, as for lakes and marine ecosystems, historical changes in anthropogenic N loading can affect C cycling in riverine food webs, and confirm the long-term interactions between N and C biogeochemical cycles in running waters.

Seasonal variations in maternal provisioning of Crepidula fornicata (Gastropoda): fatty acid composition of females, embryos and larvae.

Recruitment success of marine invertebrate populations not only depends on the number of recruits but also on their quality which affects their survival. In species characterized by a mixed development (encapsulated embryonic development and release of planktotrophic larvae), the offspring quality depends on both maternal provisioning and larval feeding. Here, we investigated potential changes of maternal provisioning over the whole reproductive period in a gastropod with a mixed development: Crepidula fornicata. In its introduction area, C. fornicata reproduces from February to October, which implies that both adults and larvae are exposed to different food availabilities. Maternal provisioning was assessed by measuring the fatty acid (FA) composition of females, encapsulated embryos and larvae, in February, May, July and September 2009. FA are essential resources for the development of embryos and larvae, and are key biomarkers of offspring quality. Our results showed differences in FA composition between muscles, visceral masses, and encapsulated embryos. In particular, FA composition of embryos was similar to that of the visceral mass. Seasonal variations in FA composition were observed: in the middle of the reproductive season (May and July), female tissues and embryos showed a higher proportion of polyunsaturated fatty acids and especially ω3, as compared to the beginning and end of the reproductive season (February and September). This showed that through maternal provisioning the quality of C. fornicata offspring was higher in the middle of the reproductive season. Whether this would result in an increase of recruitment success and juvenile performance would require further investigations.