Characterization of 14 Triticum species for the NAM-B1 gene and its associated traits.

BACKGROUND: Wheat grain protein, zinc (Zn), and iron (Fe) content are important wheat qualities crucial for human nutrition and health worldwide. Increasing these three components simultaneously in wheat grains by a single gene came into the picture through NAM-B1 cloning. NAM-B1 gene and its association with the mentioned grain quality traits have been primarily studied in common and durum wheat and their progenitors T. dicoccum and T. dicoccoides. METHOD: In the present study, for the first time, 38 wheat accessions comprising ten hexaploids from five species and 28 tetraploids from nine species were evaluated in the field for two consecutive years. Additionally, the 582 first nucleotides of the NAM-B1 gene were examined. RESULT: The NAM-B1 gene was present in 21 tetraploids and five hexaploid accessions. Seven tetraploid accessions contained the wild-type allele (five T. dicoccum, one T. dicoccoides, and one T. ispahanicum) and fourteen the mutated allele with a 'T' insertion at position 11 in the open reading frame, causing a frameshift. In hexaploid wheat comprising the gene, only one accession of T. spelta contained the wild-type allele, and the rest resembled the insertion mutated type. In the two-year field experiment, eight accessions with the wild-type NAM-B1 allele had significantly higher protein, Zn and Fe grain content when compared to indel-type accessions. Additionally, these accessions exhibited a lower mean for seed-filling duration than all other accessions containing indel-type alleles. In terms of grain yield, 1,000-kernel weight, kernel diameter, and kernel length, T. dicoccum accessions having wild-type alleles were similar to the indel-type accessions over two years of evaluation. CONCLUSION: These findings further support the possibility of simultaneous improvement of wheat grain protein, Zn, and Fe content by a single gene crucial for human nutrition and health worldwide.

Water Stress and Seed Color Interacting to Impact Seed and Oil Yield, Protein, Mucilage, and Secoisolariciresinol Diglucoside Content in Cultivated Flax (Linum usitatissimum L.).

Flaxseed (Linum usitatissimum L.) is a plant with a wide range of medicinal, health, nutritional, and industrial uses. This study assessed the genetic potential of yellow and brown seeds in thirty F4 families under different water conditions concerning seed yield, oil, protein, fiber, mucilage, and lignans content. Water stress negatively affected seed and oil yield, while it positively affected mucilage, protein, lignans, and fiber content. The total mean comparison showed that under normal moisture conditions, seed yield (209.87 g/m2) and most quality traits, including oil (30.97%), secoisolariciresinol diglucoside (13.89 mg/g), amino acids such as arginine (1.17%) and histidine (1.95%), and mucilage (9.57 g/100 g) were higher in yellow-seeded genotypes than the brown ones ((188.78 g/m2), (30.10%), (11.66 mg/g), (0.62%), (1.87%), and (9.35 g/100 g), respectively). Under water stress conditions, brown-seeded genotypes had a higher amount of fiber (16.74%), seed yield (140.04 g/m2), protein (239.02 mg. g-1), methionine (5.04%), and secondary metabolites such as secoisolariciresinol diglucoside (17.09 mg/g), while their amounts in families with yellow seeds were 14.79%, 117.33 g/m2, 217.12 mg. g-1, 4.34%, and 13.98 mg/g, respectively. Based on the intended food goals, different seed color genotypes may be appropriate for cultivation under different moisture environments.

Combined foliar application of Zn and Fe increases grain micronutrient concentrations and alleviates water stress across diverse wheat species and ploidal levels.

This study aimed to examine the reaction of several wheat species with different ploidy levels to foliar application of zinc (Zn) and iron (Fe) under different water regimes. Thirty-five wheat genotypes, including nineteen tetraploids from ten different species, ten hexaploids from five species, and six diploids from three species, were evaluated in the field over two moisture regimes with the following four treatments: control, foliar Zn application, foliar Fe application, and foliar Zn + Fe application. The experiments were conducted according to a split-plot scheme in a randomized complete block design with two replications in each moisture regime. Water stress negatively affected all measured traits, except grain Zn and Fe content. Combined foliar application of Zn + Fe significantly increased yield and alleviated yield reduction caused by water stress. Applying Zn and Fe significantly increased both micronutrient content in grains under both moisture conditions. Tetra and hexaploid species yielded nearly four times as much grain as unimproved diploid species and were less affected by water stress. All ploidy levels responded almost similarly to Zn and Fe treatments, with the combined application being as effective as each element separately. The highest yield increase in response to combined application of Zn + Fe under the two moisture conditions and the highest grain Zn content in response to Zn application under water stress was observed in hexaploid wheat. Combined foliar application of Zn and Fe increases grain Zn and Fe and alleviates water stress's adverse effects on all wheat ploidy levels, making biofortification cost-effective.

Water stress intensified the relation of seed color with lignan content and seed yield components in flax (Linum usitatissimum L.).

This study aimed to investigate the effect of yellow and brown seed coat color of flax on lignan content, seed yield, and yield components under two contrasting environments of non-stress and water stress conditions. The water stress environment intensified the discrimination between the two seed color groups as the yellow seeded families had lower values for seed yield components under the water stress. Heritability and the genetic advance for seed yield were significantly higher in brown-seeded families than those of yellow-seeded ones at water stress conditions. Secoisolariciresinol diglucoside (SDG) as the chief lignan in flaxseed was more abundant in yellow-seeded families under the non-stress environment but under water stress conditions, it increased in brown seeded families and exceeded from yellow ones. Considering that the brown and yellow seed color families were full sibs and shared a similar genetic background but differed in seed color, it is concluded that a considerable interaction exists between the flax seed color and moisture stress concerning its effect on seed yield and yield components and also the seed SDG content. Brown-seeded genotypes are probably preferred for cultivation under water stress conditions for better exploitation of flax agronomic and nutritional potentials.

Polyphenolic and molecular variation in Thymus species using HPLC and SRAP analyses.

In the present research, inter and intra genetic variability of 77 accessions belonging to 11 Thymus species were assessed using eight SRAP primer combinations. High polymorphism (98.3%) was observed in the studied species. The cluster analysis classified Thymus species into five main groups. According to molecular variance (AMOVA) analysis, 63.14% of total genetic variation was obtained within the species, while 36.86% of variation was observed among species. STRUCTURE analysis was also performed to estimate the admixture of species. For instance, T. carmanicus and T. transcaspicus revealed high admixtures. HPLC analysis also demonstrated the presence of rosmarinic acid (32.3-150.7 mg/100 g DW), salvianolic acid (8-90 mg/100 g DW), and cinnamic acid (1.7-32.3 mg/100 g DW) as major phenolic acids, as well as apigenin, epicatechin, and naringenin as the major flavonoids. The highest phenolic and flavonoid contents were detected in T. transcaspicus (37.62 mg gallic acid equivalents (GAE) g-1 DW) and T. vulgaris (8.72 mg quercetin equivalents (QE) g-1 DW), respectively. The antioxidant properties and total phenolic of Thymus species were examined using DPPH and ß-carotene-linoleic acid model systems and consequently T. vulgaris and T. pubescens were detected with the highest and the lowest antioxidant activities respectively. Cluster and principal Components Analysis (PCA) of the components classified the species in to three groups. Finally, similarity within some species was observed comparing molecular and phytochemical markers. For instance, T. vulgaris separated from other species according to major polyphenolic profiles and molecular analyses, as well as T. transcaspicus, T. carmanicus, and T. fedtschenkoi that were clustered in the same groups.

Genetic relations among and within wild and cultivated Thymus species based on morphological and molecular markers.

In the present study, the diversity of 11 Thymus species was assessed using molecular and morphological markers. Essential oil content and morphological traits were also investigated during two agronomic years. The result of the analysis of variance showed considerable differences among morphological traits. In the first and second years, the essential oil content of the species varied from 0.63 to 1.94% and 0.86 to 2.34%, respectively. T. vulgaris and T. migricus showed the highest essential oil content in two agronomic years. In this research, nine ISSR primers were also used to amplify 151 polymorphic bands in 77 accessions belonging to 11 Thymus species. Cluster and principal component (PCA) analyses classified the species in three major groups. Among the species, T. vulgaris and T. fedtschenkoi presented relatively higher genetic distance in comparison with other species. Analysis of molecular variance (AMOVA) revealed that 72.34% of the total variation was belonged to within-species variation, while 27.66% was associated among the species. High gene flow (Nm = 1.11) and genetic differentiation (Gst = 0.31) were also observed among the species. T. transcaspicus exhibited the highest genetic variation (0.19), polymorphism % (57.69%), and Shannon index (0.29). The STRUCTURE analysis also showed a high admixture of Thymus species that might be originated from a high rate of natural hybridization. Finally, based on molecular and morphological information, T. vulgaris and T. carmanicus can be suggested as good candidate species for further breeding programs in Thymus species.

Evaluation of SRAP marker efficiency in identifying the relationship between genetic diversities of corn inbred lines with seed quantity and quality in derived hybrids.

In order to estimate the efficiency of SRAP markers for identifying the performance of seed quantity and quality in maize single crosses, 13 inbred lines obtained from CIMMYT germplasm bank were crossed to A679, K166B, K18 and MO17 testers using the line×tester method. The inbred lines and derived hybrids were evaluated in two experiments separately in a randomized complete block design with three replications during two growing seasons in 2014 and 2015. In order to evaluate genetic variation in the inbred lines, 25 SRAP markers were also used. The results of variance analysis between inbred lines were showed a significant variation (P≤0.01) for seed quantity and quality. The analysis of variance among the hybrids derived from inbred lines was showed a significant variation (P≤0.01) for oil percent, starch content, protein content, seed yield and thousand seed weights and a significant variation for the dry matter (P≤0.05). The maximum Euclidian distance between the two lines was 24.5 times greater than the minimum distance between two lines. The PCR amplification for the 17 parentallines with the 25 combinations of SRAP primers generated a total of 205 clear and scorable bands, of which 135 were polymorphic (65.75%). The average distance between the studied lines was 0.324 on the bases of the Jaccard coefficient and maximum distance between two lines was 2.87 times greater than the minimum distance between two lines. The M1E1, M1E5, M5E3, M5E4, and M5E5 were superior to other primer combinations in expressing genetic diversity based on the primer information indices. The banding pattern of the studied primer combinations related to the genetic variation of the inbred lines based on the studied traits revealed that the M5E1 primer pair can predict the distance of inbred lines for dry matter better than other primers. Also, the primers combination of M4E4 for protein percentage, M4E4 for starch percentage, M2E3 for crude fiber, M4E3 for oil percentage, M2E5, M4E1 and M5E1 for thousand seed weight and M3E1 for seed yield, can be introduced as informative primer combination, to estimate genetic distance determination of inbred lines based on these traits. Due to the relationship between inbred lines variation based on primers combinations with the traits in hybrids progenies showed that the M2E1, M2E2, M4E1 and M5E3 for dry matter and M2E4 for starch percentage have the ability to detect hybrid performance for these traits. For traits, protein percentage, crude fiber and oil percent no suitable primers combination were found. Also, for the seed yield, three primer combinations of M1E5, M2E2 and M3E2 had the highest negative correlation. Therefore, the hybrids derived from the inbred lines with high genetic distance based on these primers combinations will have a low seed yield. The M1E2, M2E3 and M5E5 can be introduced to identify the prediction of higher thousand seed weight.

Drought stress influenced sesamin and sesamolin content and polyphenolic components in sesame (Sesamum indicum L.) populations with contrasting seed coat colors.

Ten sesame genotypes planted under two irrigation regimes of 60% and 90%, as the maximum allowable depletion (MAD), were used to investigate the effects of drought stress on certain quantitative and qualitative characters of sesame seeds with four contrasting coat colors. The polyphenolic components, sesamin, sesamolin, total flavonoid content (TFC), total phenolic content (TPC), radical scavenging activity (RSA), seed yield, and oil content of the seeds were also examined. Results revealed that drought decreased seed yield, oil content, sesamin, and quercetin but increased TFC, TPC, and RSA as well as most of polyphenolic components and sesamolin. The drought-tolerant genotypes including Markazi1 exhibited higher chlorogenic, ellagic, and p-coumaric acids as well as TFC, RSA, and rutin. While the dark-seeded sesame genotypes contained higher caffeic, ferulic, ellagic acids as well as TPC and RSA, the light-seeded ones were richer in sesamin and sesamolin as well as p-coumaric and gallic acids. The findings of the study provided basic information on the changes in some seed secondary metabolites when sesame was subjected to drought stress. The results also confirmed not only the presence of considerable amounts of antioxidants in sesame seeds but also differences in secondary metabolite levels among the sesame seeds with different seed coat colors.

Effect of Drought Stress on Total Phenolic, Lipid Peroxidation, and Antioxidant Activity of Achillea Species.

The changes in total phenolic content (TPC), total flavonoid content (TFC), proline, malondialdehyde (MDA), H2O2, and antioxidant activity were assessed based on three model systems in three Achillea species (Achillea millefolium, A. nobilis, and A. filipendulina) growing under four irrigation regimes, including 100% FC (field capacity as normal irrigation) 75% FC (low stress), 50% FC (moderate stress), and 25% FC (severe stress) conditions. The highest TPC (47.13 mg tannic acid/g DW) and TFC (20.86 mg quercetin/g W) were obtained in A. filipendulina under moderate and severe stress conditions. In 2,2-diphenyl-1-picrylhydrazyl (DPPH) assay, the highest and the lowest antioxidant activity was obtained for A. millefolium (70.28%) and A. filipendulina (53.21%), respectively, while in the FTC model system A. nobilis revealed the highest antioxidant activity (1.934) in severe drought condition. In the linoleic model system, the highest antioxidant activity was observed under low drought stress condition in A. nobilis. MDA and H2O2 content were increased due to both low (75% FC) and moderate (50% FC) drought stress, but they were decreased under severe stress condition (25% FC). Furthermore, A. millefolium revealed the lowest H2O2 (4.96 nm/g FW) and MDA content (176.32 µmol/g). Investigation of the relationship among different metabolites showed a strong positive correlation with TPC and TFC. Finally, the moderate drought stress treatment (50% FC) was introduced as the optimum condition to obtain appreciable TPC and TFC,, while the highest antioxidant activity was obtained in severe stress condition (25%FC).

Mapping QTL for grain yield, yield components, and spike features in a doubled haploid population of bread wheat.

A doubled haploid (DH) population derived from a cross between the Japanese cultivar 'Fukuho-kumogi' and the Israeli wheat line 'Oligoculm' was used to map genome regions involved in the expression of grain yield, yield components, and spike features in wheat (Triticum aestivum L). A total of 371 markers (RAPD, SSR, RFLP, AFLP, and two morphological traits) were used to construct the linkage map that covered 4190 cM of wheat genome including 28 linkage groups. The results of composite interval mapping for all studied traits showed that some of the quantitative trait loci (QTL) were stable over experiments conducted in 2004 and 2005. The major QTL located in the Hair-Xpsp2999 interval on chromosome 1A controlled the expression of grains/spike (R(2) = 12.9% in 2004 and 22.4% in 2005), grain weight/spike (R(2) = 21.4% in 2004 and 15.8% in 2005), and spike number (R(2) = 15.6% in 2004 and 5.4% in 2005). The QTL for grain yield located on chromosomes 6A, 6B, and 6D totally accounted for 27.2% and 31.7% of total variation in this trait in 2004 and 2005, respectively. Alleles inherited from 'Oligoculm' increased the length of spikes and had decreasing effects on spike number. According to the data obtained in 2005, locus Xgwm261 was associated with a highly significant spike length QTL (R(2) = 42.33%) and also the major QTL for spikelet compactness (R(2) = 26.1%).

Diversity of Sinorhizobium strains nodulating Medicago sativa from different Iranian regions.

Alfalfa is believed to have originated in north-western Iran and has a long history of coexistence with its bacterial symbiont Sinorhizobium in soils of Iran. However, little is known about the diversity of Sinorhizobium strains nodulating Iranian alfalfa genotypes. In this study, Sinorhizobium populations were sampled from eight different Iranian sites using three cultivars of Medicago sativa as trap host plants. A total of 982 rhizobial strains were isolated and species were identified showing a large prevalence of Sinorhizobium meliloti over Sinorhizobium medicae. Analysis of salt tolerance demonstrated a great phenotypic diversity. The genetic diversity of the Sinorhizobium isolates was analysed using BOX-PCR and enterobacterial repetitive intergenic consensus (ERIC)-PCR. Patterns ofBOX-PCR fingerprinting were statistically analysed with AMOVA to evaluate the role of plant variety and site of origin in the genetic variance observed. Results indicated that most of the total molecular variance was attributable to divergence among strains isolated from different sites and cultivars (intrapopulation, strain-by-strain variance). Moreover, the analysis showed the presence of two geographic populations (west and northwest), indicating that the effect of the site of origin could be more relevant in shaping population genetic diversity than the effect of cultivar or individual plant.