Chromosome Folding Promotes Intrachromosomal Aberrations under Radiation- and Nuclease-Induced DNA Breakage.

The long-standing question in radiation and cancer biology is how principles of chromosome organization impact the formation of chromosomal aberrations (CAs). To address this issue, we developed a physical modeling approach and analyzed high-throughput genomic data from chromosome conformation capture (Hi-C) and translocation sequencing (HTGTS) methods. Combining modeling of chromosome structure and of chromosomal aberrations induced by ionizing radiation (IR) and nuclease we made predictions which quantitatively correlated with key experimental findings in mouse chromosomes: chromosome contact maps, high frequency of cis-translocation breakpoints far outside of the site of nuclease-induced DNA double-strand breaks (DSBs), the distinct shape of breakpoint distribution in chromosomes with different 3D organizations. These correlations support the heteropolymer globule principle of chromosome organization in G1-arrested pro-B mouse cells. The joint analysis of Hi-C, HTGTS and physical modeling data offers mechanistic insight into how chromosome structure heterogeneity, globular folding and lesion dynamics drive IR-recurrent CAs. The results provide the biophysical and computational basis for the analysis of chromosome aberration landscape under IR and nuclease-induced DSBs.

Biofilter performance of pine nuggets and lava rock as media.

Wood chips and bark mulch are commonly used biofilter media because they are generally locally available and inexpensive. Nevertheless, these organic materials degrade and require replacement every 2-5 years. In this study, airflow characteristics and gas reduction efficiencies of two alternative biofilter media (pine nuggets and lava rock) with high porosity and potentially longer service lives were evaluated at three empty bed contact times (1, 3, and 5s) and two moisture levels (82% and 90% relative humidity). The lava rock had a lower pressure drop across the media and maintained higher media depth. Gas reduction efficiencies were highest for lava rock at 5s empty bed contact time and 90% humidity. The reduction efficiencies at these conditions were 56%, 88%, 87%, 25%, and 0.7% for ammonia, hydrogen sulfide, total reduced sulfur, methane and nitrous oxide, respectively. Odor reduction up to 48% was observed but was not consistent.