Endolithic Fungal Diversity in Antarctic Oligocene Rock Samples Explored Using DNA Metabarcoding.

In this study, we evaluated the fungal diversity present associated with cores of Oligocene rocks using a DNA metabarcoding approach. We detected 940,969 DNA reads grouped into 198 amplicon sequence variants (ASVs) representing the phyla Ascomycota, Basidiomycota, Mortierellomycota, Chytridiomycota, Mucoromycota, Rozellomycota, Blastocladiomycota, Monoblepharomycota, Zoopagomycota, Aphelidiomycota (Fungi) and the fungal-like Oomycota (Stramenopila), in rank abundance order. Pseudogymnoascus pannorum, Penicillium sp., Aspergillus sp., Cladosporium sp., Aspergillaceae sp. and Diaporthaceae sp. were assessed to be dominant taxa, with 22 fungal ASVs displaying intermediate abundance and 170 being minor components of the assigned fungal diversity. The data obtained displayed high diversity indices, while rarefaction indicated that the majority of the diversity was detected. However, the diversity indices varied between the cores analysed. The endolithic fungal community detected using a metabarcoding approach in the Oligocene rock samples examined contains a rich and complex mycobiome comprising taxa with different lifestyles, comparable with the diversity reported in recent studies of a range of Antarctic habitats. Due to the high fungal diversity detected, our results suggest the necessity of further research to develop strategies to isolate these fungi in culture for evolutionary, physiological, and biogeochemical studies, and to assess their potential role in biotechnological applications.

Genomic analysis of feed efficiency traits in beef cattle using random regression models.

Feed efficiency plays a major role in the overall profitability and sustainability of the beef cattle industry, as it is directly related to the reduction of the animal demand for input and methane emissions. Traditionally, the average daily feed intake and weight gain are used to calculate feed efficiency traits. However, feed efficiency traits can be analysed longitudinally using random regression models (RRMs), which allow fitting random genetic and environmental effects over time by considering the covariance pattern between the daily records. Therefore, the objectives of this study were to: (1) propose genomic evaluations for dry matter intake (DMI), body weight gain (BWG), residual feed intake (RFI) and residual weight gain (RWG) data collected during an 84-day feedlot test period via RRMs; (2) compare the goodness-of-fit of RRM using Legendre polynomials (LP) and B-spline functions; (3) evaluate the genetic parameters behaviour for feed efficiency traits and their implication for new selection strategies. The datasets were provided by the EMBRAPA-GENEPLUS beef cattle breeding program and included 2920 records for DMI, 2696 records for BWG and 4675 genotyped animals. Genetic parameters and genomic breeding values (GEBVs) were estimated by RRMs under ssGBLUP for Nellore cattle using orthogonal LPs and B-spline. Models were compared based on the deviance information criterion (DIC). The ranking of the average GEBV of each test week and the overall GEBV average were compared by the percentage of individuals in common and the Spearman correlation coefficient (top 1%, 5%, 10% and 100%). The highest goodness-of-fit was obtained with linear B-Spline function considering heterogeneous residual variance. The heritability estimates across the test period for DMI, BWG, RFI and RWG ranged from 0.06 to 0.21, 0.11 to 0.30, 0.03 to 0.26 and 0.07 to 0.27, respectively. DMI and RFI presented within-trait genetic correlations ranging from low to high magnitude across different performance test-day. In contrast, BWG and RWG presented negative genetic correlations between the first 3 weeks and the other days of performance tests. DMI and RFI presented a high-ranking similarity between the GEBV average of week eight and the overall GEBV average, with Spearman correlations and percentages of individuals selected in common ranging from 0.95 to 1.00 and 93 to 100, respectively. Week 11 presented the highest Spearman correlations (ranging from 0.94 to 0.98) and percentages of individuals selected in common (ranging from 85 to 94) of BWG and RWG with the average GEBV of the entire period of the test. In conclusion, the RRM using linear B-splines is a feasible alternative for the genomic evaluation of feed efficiency. Heritability estimates of DMI, RFI, BWG and RWG indicate enough additive genetic variance to achieve a moderate response to selection. A new selection strategy can be adopted by reducing the performance test to 56 days for DMI and RFI selection and 77 days for BWG and RWG selection.

Influence of the intertropical convergence zone on early cretaceous plant distribution in the South Atlantic.

The influence of the Intertropical Convergence Zone (ITCZ) in the emerging South Atlantic region during the late Aptian (Early Cretaceous) is reflected in the spatio-temporal distribution of plant communities recorded in eight Brazilian sedimentary basins. The distribution of the bioclimatic groups of hygrophytes, hydrophytes, tropical lowland flora, upland flora, and xerophytes was quantified using pollen and spores. A predominance of xerophytes from the tropical xerophytic shrubland biome characterized the pre-evaporitic, evaporitic, and post-evaporitic paleoclimatic phases, in particular the evaporitic phase. The region experienced humidity events in the pre-evaporitic and post- evaporitic phases, especially near the paleoequator, where the tropical rainforest biome with two phytophysiognomies (lowland and montane rainforests) prevailed. Increasing humidity had a positive effect on plant diversity.

Genomic evaluation for novel stayability traits in Nellore cattle.

Cow stayability plays a major role on the overall profitability of the beef cattle industry, as it is directly related to reproductive efficiency and cow's longevity. Stayability (STAY63) is usually defined as the ability of the cow to calve at least three times until 76 months of age. This is a late-measured and lowly heritable trait, which consequently constrains genetic progress per time unit. Thus, the use of genomic information associated with novel stayability traits measured earlier in life will likely result in higher prediction accuracy and faster genetic progress for cow longevity. In this study, we aimed to compare pedigree-based and single-step GBLUP (ssGBLUP) methods as well as to estimate genetic correlations between the proposed stayability traits: STAY42, STAY53 and STAY64, which are measured at 52, 64 and 76 months of cow's age, considering at least 2, 3 and 4 calving, respectively. ssGBLUP yielded the highest prediction accuracy for all traits. The heritability estimates for STAY42, STAY53, STAY63 and STAY64 were 0.090, 0.151, 0.152 and 0.143, respectively. The genetic correlations between traits ranged from 0.899 (STAY42 and STAY53) to 0.985 (STAY53 and STAY63). The high genetic correlation between STAY42 and STAY53 suggests that besides being related to cow longevity, STAY53 is also associated with the early-stage reproductive efficiency. Thus, STAY53 is recommended as a suitable selection criterion for reproductive efficiency due to its higher heritability, favourable genetic correlation with other traits, and measured earlier in life, compared with the conventional stayability trait, that is STAY63.

Devemos monitorar a pressão intracraniana de pacientes com TCE grave Marshall II? / Should we monitor ICP in severe brain trauma injury Marshall II patients?

Objetivos: Avaliar a relação da PIC com o crescimento de lesões e morbimortalidade em pacientes Marshall II e determinar a necessidade de sua monitorização. Método: Estudo de coorte observacional prospectivo em pacientes com TCE grave classificados como Marshall II. Resultados: Setenta pacientes foram divididos em dois grupos baseados na PIC; G1: PIC ≤ 20 mmHg (49 pacientes) e G2 PIC > 20 mmHg (21 pacientes). Os achados mais comuns foram hemorragias subaracnóideas e contusões.A mortalidade foi maior em G2 que em G1 (OR: 11,7) (IC 95%: 2,2 a 63,1). A mediana da Escala de Desfecho de Glasgow após 90 dias foi de 2 para o G2 e de 5 para o G1. O surgimento ou progressões de lesões ocorreram em 71% dos pacientes no G2 contra 10% no G1 (p < 0,05). Em comparação ao G1, o OR de um novo achado na TC foi 22 vezes maior no G2 (IC 95%: 5,02 a 106,9). Dois pacientes do G2 precisaram de cirurgia e nenhum do G1. Conclusões: Pacientes Marshall II, com hipertensão intracraniana, apresentam maior risco para crescimento de lesões na TC de controle, pior prognóstico e maior mortalidade que aqueles sem hipertensão. A monitorização desses pacientes foi definitiva para determinar o prognóstico. Pacientes Marshall II devem ser monitorados.

Objectives: Evaluate the relationship of intracranial hypertension with an increase of brain lesions, morbimortality in Marshall II patients and determine whether these patients need to have ICP monitored. Method: Prospective observational cohort study on severe TBI patients (GCS ≤ 8), Marshall CT classification II. Results: A total of 70 patients were divided into two groups based on ICP; G1: ICP ≤ 20 mmHg (49 patients) and G2 ICP > 20 mmHg (21 patients). The most common CT findings were: subarachnoid hemorrhages and contusions. Mortality was higher in G2 than in G1 (OR: 11.7) (95% CI: 2.2 to 63.1). The median Glasgow Outcome Score after 90 days was 2 for G2 and 5 to G1. The onset or progression of lesions occurred in 71% of patients in G2, against 10% in G1 (p < 0.05). Compared toG1, the OR for a new finding on CT was twenty-two times higher in G2 (95% CI: 5.02 to 106.9). Two G2 patients needed surgery and none of the G1. Conclusions: Severe TBI patients with Marshall score II and intracranial hypertension, are at greater risk for new CT abnormalities, worse prognosis, and higher mortality than those with no hypertension. ICP monitoring was crucial to define prognosis. Severe TBI Marshall II patients should be monitored.

Aspectos genéticos do câncer colorretal e seu impacto no manejo da doença / Genetic aspects of colorectal cancer and its impact on disease management

Diversos estudos buscam agregar métodos de diagnóstico e de terapêutica com o intuito de diminuir a incidência e a morbimortalidade do câncer colorretal (CCR). Novas tecnologias propostas para esse fim decorrem da análise do DNA fecal, terapias voltadas para alvos moleculares específicos e determinação de resposta terapêutica e prognóstico com a análise genética. Este estudo procura revisar essas novas conquistas e apresentá-las para que possam ser usadas de forma prática e objetiva.

Several studies seek to enhance diagnosis and treatment of colorectal cancer (CRC) in order to reduce its incidence and mortality. New technologies proposed include the analysis of fecal DNA, therapies aimed at specific molecular targets and determination of therapeutic response and prognosis with genetic analysis. This study aims to review these new achievements and present them so that they can be used in a practical and objective way.

Avaliaçäo tardia de fraturas da extremidade distal do radio, com particular atençäo para as instabilidades carpais associadas / Late evaluation of distal radius fractures, with special attention to associated carpal instabilities

Instabilidade carpal tem sido descrita em associaçäo com fraturas da extremidade distal do rádio. No presente trabalho, foram estudados 26 pacientes, dentre 253 portadores de fraturas da extremidade distal do rádio, tendo sido submetidos a avaliaçöes clínica e funcional, pelos métodos de Lindstr÷m e de De Bruijn, e radiológica, para análise dos ângulos radial e volar e do comprimento relativo do rádio, bem como do alinhamento carpal, para detecçäo das instabilidades carpais definidas como DISI e VISI. Os resultados clínicos e funcionais foram excelentes ou bons em 73 por cento dos pacientes e a análise readiográfica mostrou que houve perda de praticamente todos os parâmetros, independentemente do tipo de tratamento empregado. Instabilidade carpal foi observada em cinco pacientes (19 por cento), sendo dois VISI e trÛs DISI, todos com mais de dois anos após o trauma, mas sem queixas específicas.