Single-cell analysis reveals alternations between the aged and young mice prostates.

BACKGROUND: Aging of the male prostate is an inevitable process in which the prostate undergoes hyperplasia, and this growth may lead to compression of the urethra, resulting in voiding dysfunction and associated symptoms, and an increased risk of prostate cancer. Despite the significance of prostate aging, the molecular mechanisms involved are still not fully understood. METHODS: Prostate split by lobes from young (2 months) and aged (24 months) mice were collected for single-cell RNA sequencing (scRNA-seq) analysis. Tissues from both anterior prostate (AP) and ventral/dorsal/lateral prostate (VDLP) were included in the study. Data analysis included unsupervised clustering using the uniform manifold approximation and projection (UMAP) algorithm to identify distinct cell types based on marker gene expression. Differential gene expression analysis was performed to identify age-related changes in gene expression across different cell types. Functional enrichment analysis was conducted to elucidate biological pathways associated with differentially expressed genes. Additionally, cellular interactions and developmental trajectories were analyzed to characterize cellular dynamics during prostate aging. RESULTS: The single-cell transcriptome analysis of the mouse prostate during aging revealed heterogeneity across various cell types and their changes during the aging process. We found a significant increase in the proportion of mesenchymal and immune cells in aged mice. Our study unveiled alterations in genes and pathways associated with cellular senescence, oxidative stress, and regeneration in epithelial cells. Furthermore, we observed that basal cells may undergo epithelial-mesenchymal transition (EMT) to become mesenchymal cells, particularly prominent in aged mice. Additionally, immune cells, notably macrophages and T cells, exhibited a heightened inflammatory response in aged mice. CONCLUSION: In summary, our study provides a comparative analysis of the single-cell transcriptome of the aged and young mice prostates, elucidating cellular and molecular changes between the aged and young mice prostates.

Thulium laser en bloc resection reduces recurrence rates in NMIBC patients with tumor diameters ≥3cm compared to transurethral resection: a non-randomized controlled study.

PURPOSE: The advantages of en bloc resection of bladder tumors (ERBT) over transurethral resection of bladder tumors (TURBT) in terms of patient prognosis are not yet clear, and there are some technical limitations. We aimed to compare the tumor recurrence in non-muscle invasive bladder cancer (NMIBC) patients with tumor diameter ≥ 3 cm undergoing either TURBT or thulium laser ERBT. METHODS: The patients included were those diagnosed with NMIBC based on pathological confirmation and underwent TURBT or modified thulium laser ERBT in the Department of Urology at Tongji Hospital from 2019 to 2024. The patients' medical records were meticulously collected and postoperative follow-up was diligently conducted by trained personnel. Recurrence-free survival curves were generated utilizing the Kaplan-Meier method, and group comparisons were performed using the log-rank trend test. To minimize biases, we employed stratified survival analysis, alongside univariate and multivariate Cox regression analysis. RESULTS: This study included a total of 396 patients with NMIBC, with 214 undergoing TURBT and 182 undergoing ERBT. For all patients, there was no significant difference (P = 0.180) in RFS between the TURBT and ERBT groups. For patients with tumor diameter ≥ 3 cm, stratified analysis revealed that the RFS of the ERBT group was significantly better than that of the TURBT group (P = 0.033). However, in patients with tumor diameter < 3 cm, there was no significant difference (P = 0.150) between the two groups. Univariate (HR: 0.52, 95% CI 0.28-0.96, P = 0.036) and multivariate (HR: 0.49, 95% CI 0.25-0.93, P = 0.031) Cox analyses revealed that ERBT was an independent protective factor for recurrence in NMIBC patients with tumor diameter ≥3cm. CONCLUSION: This study found that thulium laser ERBT may offer advantages in managing NMIBC patients with tumor diameters ≥ 3 cm. This could potentially drive the clinical application of thulium laser ERBT. TRIAL REGISTRATION: Protocol was registered at Chinese Clinical Trial Register (ChiCTR) with number ChiCTR2000035407 on 12 August 2020.

Exploring fracture of H-BN and graphene by neural network force fields.

Extreme mechanical processes such as strong lattice distortion and bond breakage during fracture often lead to catastrophic failure of materials and structures. Understanding the nucleation and growth of cracks is challenged by their multiscale characteristics spanning from atomic-level structures at the crack tip to the structural features where the load is applied. Atomistic simulations offer 'first-principles' tools to resolve the progressive microstructural changes at crack fronts and are widely used to explore the underlying processes of mechanical energy dissipation, crack path selection, and dynamic instabilities (e.g. kinking, branching). Empirical force fields developed based on atomic-level structural descriptors based on atomic positions and the bond orders do not yield satisfying predictions of fracture, especially for the nonlinear, anisotropic stress-strain relations and the energy densities of edges. High-fidelity force fields thus should include the tensorial nature of strain and the energetics of bond-breaking and (re)formation events during fracture, which, unfortunately, have not been taken into account in either the state-of-the-art empirical or machine-learning force fields. Based on data generated by density functional theory calculations, we report a neural network-based force field for fracture (NN-F3) constructed by using the end-to-end symmetry preserving framework of deep potential-smooth edition (DeepPot-SE). The workflow combines pre-sampling of the space of strain states and active-learning techniques to explore the transition states at critical bonding distances. The capability of NN-F3is demonstrated by studying the rupture of hexagonal boron nitride (h-BN) and twisted bilayer graphene as model problems. The simulation results elucidate the roughening physics of fracture defined by the lattice asymmetry in h-BN, explaining recent experimental findings, and predict the interaction between cross-layer cracks in twisted graphene bilayers, which leads to a toughening effect.

Corrigendum: Integrated chemical interpretation and network pharmacology analysis to reveal the anti-liver fibrosis effect of Penthorum chinense.

[This corrects the article DOI: 10.3389/fphar.2022.788388.].

Integrated Chemical Interpretation and Network Pharmacology Analysis to Reveal the Anti-Liver Fibrosis Effect of Penthorum chinense.

Liver fibrosis is a disease with complex pathological mechanisms. Penthorum chinense Pursh (P. chinense) is a traditional Chinese medicine (TCM) for liver injury treatment. However, the pharmacological mechanisms of P. chinense on liver fibrosis have not been investigated and clarified clearly. This study was designed to investigate the chemicals in P. chinense and explore its effect on liver fibrosis. First, we developed a highly efficient method, called DDA-assisted DIA, which can both broaden mass spectrometry (MS) coverage and MS2 quality. In DDA-assisted DIA, data-dependent acquisition (DDA) and data-independent acquisition (DIA) were merged to construct a molecular network, in which 1,094 mass features were retained in Penthorum chinense Pursh (P. chinense). Out of these, 169 compounds were identified based on both MS1 and MS2 analysis. After that, based on a network pharmacology study, 94 bioactive compounds and 440 targets of P. chinense associated with liver fibrosis were obtained, forming a tight compound-target network. Meanwhile, the network pharmacology experimental results showed that multiple pathways interacted with the HIF-1 pathway, which was first identified involved in P. chinense. It could be observed that some proteins, such as TNF-α, Timp1, and HO-1, were involved in the HIF-1 pathway. Furthermore, the pharmacological effects of P. chinense on these proteins were verified by CCl4-induced rat liver fibrosis, and P. chinense was found to improve liver functions through regulating TNF-α, Timp1, and HO-1 expressions. In summary, DDA-assisted DIA could provide more detailed compound information, which will help us to annotate the ingredients of TCM, and combination with computerized network pharmacology provided a theoretical basis for revealing the mechanism of P. chinense.

Fast switching water processable electrochromic polymers.

This paper describes the synthesis of two new blue to transmissive donor-acceptor electrochromic polymers: a polymer synthesized using an alternating copolymerization route (ECP-Blue-A) and a polymer synthesized using a random copolymerization (ECP-Blue-R) by Stille polymerization. These polymers utilize side chains with four ester groups per donor moiety, allowing organic solubility in the ester form, and water solubility upon saponification to their carboxylate salt form. We demonstrate that the saponified polymer salts of ECP-Blue-A and ECP-Blue-R (WS-ECP-Blue-A and WS-ECP-Blue-R) can be processed from aqueous solutions into thin films by spray-casting. Upon the subsequent neutralization of the thin films, the resulting polymer acid films are solvent resistant and can be electrochemically switched between their colored state and a transmissive state in a KNO(3)/water electrolyte solution. The polymer acids, WS-ECP-Blue-A-acid and WS-ECP-Blue-R-acid, show electrochromic contrast Δ%T of 38% at 655 nm and 39% at 555 nm for a 0.5 s switch, demonstrating the advantage of an aqueous compatible electrochrome switchable in high ionic conductivity aqueous electrolytes. The results of the electrochromic properties study indicate that these polymers are promising candidates for aqueous processable and aqueous switching electrochromic materials and devices as desired for applications where environmental impact is of importance.