High-Affinity NIR-Fluorescent Inhibitors for Tumor Imaging via Carbonic Anhydrase IX.

Tumor imaging and delivery of therapeutic agents may be achieved by designing high-affinity and high-selectivity compounds recognizing a tumor cell-expressing biomarker, such as carbonic anhydrase IX (CA IX). The CAIX, overexpressed in many hypoxic solid tumors, helps adjust to the energy requirements of the hypoxic environment, reduces intracellular acidification, and participates in the metastatic invasion of adjacent tissues. Here, we designed a series of sulfonamide compounds bearing CAIX-recognizing, high-affinity, and high-selectivity groups conjugated via a PEG linker to near-infrared (NIR) fluorescent probes used in the clinic for optically guided cancer surgery. We determined compound affinities for CAIX and other 11 catalytically active CA isozymes by the thermal shift assay and showed that the affinity Kd value of CAIX was in the subnanomolar range, hundred to thousand-fold higher than those of other CA isozymes. Similar affinities were also observed for CAIX expressed on the cancer cell surface in live HeLa cell cultures, as determined by the competition assay. The NIR-fluorescent compounds showed excellent properties in visualizing CAIX-positive tumors but not CAIX-negative knockout tumors in a nude mice xenograft model. These compounds would therefore be helpful in optically guided cancer surgery and could potentially be developed for anticancer treatment by radiotherapy.

PLBD: protein-ligand binding database of thermodynamic and kinetic intrinsic parameters.

We introduce a protein-ligand binding database (PLBD) that presents thermodynamic and kinetic data of reversible protein interactions with small molecule compounds. The manually curated binding data are linked to protein-ligand crystal structures, enabling structure-thermodynamics correlations to be determined. The database contains over 5500 binding datasets of 556 sulfonamide compound interactions with the 12 catalytically active human carbonic anhydrase isozymes defined by fluorescent thermal shift assay, isothermal titration calorimetry, inhibition of enzymatic activity and surface plasmon resonance. In the PLBD, the intrinsic thermodynamic parameters of interactions are provided, which account for the binding-linked protonation reactions. In addition to the protein-ligand binding affinities, the database provides calorimetrically measured binding enthalpies, providing additional mechanistic understanding. The PLBD can be applied to investigations of protein-ligand recognition and could be integrated into small molecule drug design. Database URL https://plbd.org/.

Picomolar fluorescent probes for compound affinity determination to carbonic anhydrase IX expressed in live cancer cells.

Numerous human cancers, especially hypoxic solid tumors, express carbonic anhydrase IX (CAIX), a transmembrane protein with its catalytic domain located in the extracellular space. CAIX acidifies the tumor microenvironment, promotes metastases and invasiveness, and is therefore considered a promising anticancer target. We have designed a series of high affinity and high selectivity fluorescein-labeled compounds targeting CAIX to visualize and quantify CAIX expression in cancer cells. The competitive binding model enabled the determination of common CA inhibitors' dissociation constants for CAIX expressed in exponentially growing cancer cells. All tested sulfonamide compounds bound the proliferating cells with similar affinity as to recombinantly purified CAIX. The probes are applicable for the design of selective drug-like compounds for CAIX and the competition strategy could be applied to other drug targets.

Improved Synthesis of the Selected Serine Protease uPA Inhibitor UAMC-00050, a Lead Compound for the Treatment of Dry Eye Disease.

The α-aminophosphonate UAMC-00050, a newly developed trypsin-like serine protease inhibitor, is a lead compound for the treatment of dry eye syndrome and ocular inflammation. The medicinal chemistry route developed at the University of Antwerp possessed several problems hampering the scale-up such as poor yields for some of the steps, hazardous reagents, and environmental footprint. Herein, we report an optimized route for the UAMC-00050, in which environmental unfriendly solvents were excluded, hazardous reagents were replaced with safer alternatives, and are more efficient in terms of atom economy. Every reaction step was optimized to reach a higher yield, and design of experiment was used to find the optimum conditions in the last step. Furthermore, all the flash chromatography purifications of intermediates were replaced with plug filtration, slurry purifications, or crystallization. The overall yield was increased from 3% in the medicinal chemistry route to 22% in the process development route.

Electrophoretic Deposition and Characterization of the Doped BaCeO3 Barrier Layers on a Supporting Ce0.8Sm0.2O1.9 Solid-State Electrolyte.

In this study, the technology of electrophoretic deposition (EPD) micrometer barrier layers based on a BaCe0.8Sm0.19Cu0.1O3 (BCSCuO) protonic conductor on dense carrying Ce0.8Sm0.2O1.9 (SDC) solid-state electrolyte substrates is developed. Methods for creating conductive sublayers on non-conductive SDC substrates under EPD conditions, such as the synthesis of a conductive polypyrrole (PPy) layer and deposition of a layer of finely dispersed platinum from a suspension of its powder in isopropanol, are proposed. The kinetics of disaggregation, disperse composition, electrokinetic potential, and the effect of adding iodine to the BCSCuO suspension on these parameters as factors determining the preparation of stable suspensions and successful EPD processes are explored. Button cells based on a carrying SDC electrolyte of 550 µm in thickness with BCSCuO layers (8-35 µm) on the anode, cathode, and anode/cathode side, and Pt electrodes are electrochemically tested. It was found that the effect of blocking the electronic current in the SDC substrate under OCV conditions was maximal for the cells with barrier layers deposited on the anode side. The technology developed in this study can be used to fabricate solid oxide fuel cells with doped CeO2 electrolyte membranes characterized by mixed ionic-electronic conductivity (MIEC) under reducing atmospheres.

Imitation of ß-lactam binding enables broad-spectrum metallo-ß-lactamase inhibitors.

Carbapenems are vital antibiotics, but their efficacy is increasingly compromised by metallo-ß-lactamases (MBLs). Here we report the discovery and optimization of potent broad-spectrum MBL inhibitors. A high-throughput screen for NDM-1 inhibitors identified indole-2-carboxylates (InCs) as potential ß-lactamase stable ß-lactam mimics. Subsequent structure-activity relationship studies revealed InCs as a new class of potent MBL inhibitor, active against all MBL classes of major clinical relevance. Crystallographic studies revealed a binding mode of the InCs to MBLs that, in some regards, mimics that predicted for intact carbapenems, including with respect to maintenance of the Zn(II)-bound hydroxyl, and in other regards mimics binding observed in MBL-carbapenem product complexes. InCs restore carbapenem activity against multiple drug-resistant Gram-negative bacteria and have a low frequency of resistance. InCs also have a good in vivo safety profile, and when combined with meropenem show a strong in vivo efficacy in peritonitis and thigh mouse infection models.

Chemical composition of Prunus padus L. flower extract and its anti-inflammatory activities in primary bone marrow-derived macrophages.

ETHNOPHARMACOLOGICAL RELEVANCE: Prunus padus L. has been traditionally used in European ethnomedicine as a treatment for internal and external purposes and is mainly used to reduce inflammation, pain and fever. The activities of P. padus flower extracts are not well characterized, and additional experimental studies at the molecular level are needed to confirm the ethnobotanical findings. AIM OF THE STUDY: To assess the potential of P. padus flower extract (PPFE) as a source of bioactive compounds through the characterization of its chemical composition and antioxidant, anti-collagenase, and anti-inflammatory activities. MATERIALS AND METHODS: The ethanolic extract (1:10 w/v in ethanol solution) from P. padus flowers was subjected to phytochemical analysis and evaluation of the 2,2-diphenyl-1-picrylhydrazyl (DPPH) radical scavenging activity. Anti-collagenase activity was determined using a spectrophotometric method in vitro. The effect of PPFE on inflammation was evaluated by measuring specific markers using flow cytometry and assessing pro-inflammatory cytokine (IL-6) release by bone marrow-derived macrophages (BMDMs) ex vivo. RESULTS: The major components of the ethanolic extract of P. padus flowers were quercetin diglycosides, chlorogenic acid and N',N″-dicaffeoyl,N‴-coumaroyl spermidine. The total phenolic content of PPFE was 85.19 mg GAE/g extract, and the EC50 value in the DPPH assay was 0.55 mg/ml. PPFE exhibited the ability to inhibit collagenase activity in a dose-dependent manner. Preincubation of BMDMs with PPFE reduced the population of M1 (pro-inflammatory) and increased the population of M2 (anti-inflammatory) macrophages. Furthermore, PPFE decreased pro-inflammatory cytokine IL-6 release from BMDMs. CONCLUSIONS: PPFE is a rich source of bioactive compounds and possesses considerable anti-inflammatory properties, supporting its use in ethnomedicine for the reduction of inflammatory processes.

One-pot synthesis of α-aminophosphonates by yttrium-catalyzed Birum-Oleksyszyn reaction.

For the first time, yttrium triflate was used as an efficient green catalyst for the synthesis of α-aminophosphonates through a one-pot three-component Birum-Oleksyszyn reaction. Under the action of this Lewis acid, enhancement of the yield and reaction chemoselectivity was provided by the achievement of an appropriate balance in the complex network of reactions.

Structure-activity relationship studies on the inhibition of the bacterial translation of novel Odilorhabdins analogues.

A structure-activity relationship (SAR) study of NOSO-95179, a nonapeptide from the Odilorhabdin class of antibacterials, was performed by systematic variations of amino acids in positions 2 and 5 of the peptide. A series of non-proteinogenic amino acids was synthesized in high enantiomeric purity from Williams' chiral diphenyloxazinone by highly diastereoselective alkylation or by aldol-type reaction. NOSO-95179 analogues for SAR studies were prepared using solid-phase peptide synthesis. Inhibition of bacterial translation by each of the synthesized Odilorhabdin analogues was measured using an in vitro test. For the most efficient analogues, antibacterial efficacy was measured against two wild-type Enterobacteriaceae (Escherichia coli and Klebsiella pneumoniae) and against an efflux defective E. coli strain (ΔtolC) to evaluate the impact of efflux on the antibacterial activity.

Crystal structure of a two-dimensional metal-organic framework assembled from lithium(I) and γ-cyclo-dextrin.

The crystal structure of the polymeric title compound, catena-poly[[[di-aqua-lithium]-µ-γ-cyclo-dextrin(1-)-[aqua-lithium]-µ-γ-cyclo-dextrin(1-)] pentadecahydrate], {[Li2(C48H79O40)2(H2O)3]·15H2O} n , consists of deprotonated γ-cyclo-dextrin (CD) mol-ecules assembled by lithium ions into metal-organic ribbons that are cross-linked by multiple O-H⋯O hydrogen bonds into sheets extending parallel to (01). Within a ribbon, one Li+ ion is coordinated by one deprotonated hydroxyl group of the first γ-CD torus and by one hydroxyl group of the second γ-CD torus as well as by two water mol-ecules. The other Li+ ion is coordinated by one deprotonated hydroxyl and by one hydroxyl group of the second γ-CD torus, by one hydroxyl group of the first γ-CD torus as well as by one water mol-ecule. The coordination spheres of both Li+ cations are distorted tetra-hedral. The packing of the structure constitute channels along the a axis. Parts of the hy-droxy-methyl groups in cyclo-dextrin molecules as well as water mol-ecules show two-component disorder. Electron density associated with additional disordered solvent mol-ecules inside the cavities was removed with the SQUEEZE [Spek (2015 ▸). Acta Cryst. C71, 9-18] routine in PLATON. These solvent mol-ecules are not considered in the given chemical formula and other crystal data. Five out of the sixteen hy-droxy-methyl groups and one water mol-ecule are disordered over two sets of sites.

Stereodivergent Synthesis of Pseudotabersonine Alkaloids.

An eight-step stereodivergent synthesis of enantiomerically pure (-)-14-epi-pseudotabersonine and (+)-pseudotabersonine has been developed from a common N-tert-butanesulfinyl ketimine key intermediate.

Diastereoselective hydroxymethylation of cyclic N-tert-butanesulfinylketimines using methoxymethanol as formaldehyde source.

Hydroxymethylation of cyclic tert-butanesulfinylketimine-derived lithium enamides with methoxymethanol proceeds with excellent diastereoselectivity (99:1 dr). Methoxymethanol is a stable and easy-to-handle source of anhydrous monomeric formaldehyde in the reaction with lithium enamides. Cyclic α-hydroxymethyl ketimines undergo highly diastereoselective reduction to syn- or anti-1,3-amino alcohols.