Isochronous island bifurcations driven by resonant magnetic perturbations in tokamaks.

Recent evidence shows that heteroclinic bifurcations in magnetic islands may be caused by the amplitude variation of resonant magnetic perturbations in tokamaks. To investigate the onset of these bifurcations, we consider a large aspect ratio tokamak with an ergodic limiter composed of two pairs of rings that create external primary perturbations with two sets of wave numbers. An individual pair produces hyperbolic and elliptic periodic points, and its associated islands, that are consistent with the Poincaré-Birkhoff fixed-point theorem. However, for two pairs producing external perturbations resonant on the same rational surface, we show that different configurations of isochronous island chains may appear on phase space according to the amplitude of the electric currents in each pair of the ergodic limiter. When one of the electric currents increases, isochronous bifurcations take place and new islands are created with the same winding number as the preceding islands. We present examples of bifurcation sequences displaying (a) direct transitions from the island chain configuration generated by one of the pairs to the configuration produced by the other pair, and (b) transitions with intermediate configurations produced by the limiter pairs coupling. Furthermore, we identify shearless bifurcations inside some isochronous islands, originating nonmonotonic local winding number profiles with associated shearless invariant curves.

Characterizing pregnancy losses in Bos indicus beef females receiving a fixed-timed artificial insemination protocol.

This experiment evaluated pregnancy losses from day 30 of gestation to calving in Bos indicus females, and evaluated if serum haptoglobin concentrations during early gestation impacts subsequent pregnancy losses. A total of 4926 Nelore females were used, being 1802 nulliparous heifers inseminated as yearlings (precocious heifers), 1356 nulliparous heifers inseminated at 24 months of age (conventional heifers), 887 suckling primiparous cows, and 881 suckling multiparous cows. Cows were assigned to an ovulation synchronization + fixed-time artificial insemination (FTAI) protocol from day -11 to 0 of the experiment. Pregnancy status was verified using transrectal ultrasonography on days 30 and 60 after FTAI, via transrectal palpation on day 150 after FTAI, and according to calf birth. Blood samples were collected from all animals diagnosed pregnant on day 30 after FTAI, and analyzed for serum concentrations of haptoglobin and pregnancy associated glycoproteins (PAG). Pregnancy loss was greater (P < 0.01) from day 60-150 of gestation (10.2 %) compared with day 30-60 of gestation (6.0 %) and with day 150 of gestation to calving (7.4 %), and differed (P = 0.04) between these latter two periods. Pregnancy loss from day 30-60 of gestation did not differ (P = 0.26) among parities, whereas total pregnancy losses (day 30 to calving) were greater (P < 0.01) in precocious (28.4 %) and conventional (27.1 %) heifers compared with primiparous (16.4 %) and multiparous (13.0 %) cows. Serum PAG concentrations on day 30 after FTAI were less (P ≤ 0.03) in cows that lost the pregnancy (5.63 ng/mL) from day 30-60 of gestation, as well as those that lost the pregnancy from day 30 to calving (8.59 ng/mL) compared with cohorts that maintained the pregnancy (9.39 and 9.32 ng/mL, respectively). No differences in serum PAG concentrations on day 30 after FTAI were noted (P ≥ 0.23) according to pregnancy losses from day 60 to calving. Serum haptoglobin concentration on day 30 after FTAI also did not differ (P ≥ 0.48) between cows that maintained or lost the pregnancy. This experiment provides novel information about pregnancy losses after day 30 of gestation in B. indicus cattle, with most losses occurring as fetal mortality and not affected by systemic inflammation during early gestation. Pregnancy losses were nearly doubled in precocious and conventional heifers compared with parous cows, demonstrating the relevance of this reproductive failure to B. indicus replacement heifers.

Does global warming threaten small-scale bivalve fisheries in NW Spain?

Shellfisheries of the intertidal and shallow subtidal infaunal bivalves Ruditapes decussatus, Ruditapes philippinarum, Venerupis corrugata and Cerastoderma edule are of great socio-economic importance (in terms of landings) in Europe, specifically in the Galician Rías Baixas (NW Spain). However, ocean warming may threaten these fisheries by modifying the geographic distribution of the species and thus affecting productive areas. The present study analysed the impact of rising ocean temperature on the geographical distribution of the thermal comfort areas of these bivalves throughout the 21st century. The Delft3D model was used to downscale climate data from CORDEX and CMIP5 and was run for July and August in three future periods (2025-2049, 2050-2074 and 2075-2099) under the RCP8.5 scenario. The areas with optimal temperature conditions for shellfish harvesting located in the middle and outer parts of the rias may increase in the near future for R. decussatus, V. corrugata and C. edule and decrease in the far future for R. philippinarum. Moreover, shellfish beds located in the shallower areas of the inner parts of the Rías Baixas could be affected by increased water temperature, reducing the productive areas of the four species by the end of the century. The projected changes in thermal condition will probably lead to changes in shellfish harvesting modality (on foot or aboard vessels) with further socio-economic consequences.

Historical and future naturalization of Magallana gigas in the Galician coast in a context of climate change.

Magallana gigas is a naturalized species on the north coast of Galicia (Rías Altas, Northwest Iberian Peninsula), where it was unintentionally introduced. In recent decades, a greater abundance of M. gigas has been observed on the Galician coast, expanding towards the south, reaching the Artabro Gulf (Rías Centrales, NW Galician coast), probably due to ocean warming. Although this species has been cultivated in the Rías Baixas since the early 1990s and spawning has been reported, recruitment was never observed, which is likely due to the cold water upwelled during the spawning months. The future rise in seawater temperature may favor the naturalization of the non-indigenous species M. gigas southwards, in the Rías Baixas. Thermally, the Ría de Arousa seems to be the most favorable estuary for the future settlement of M. gigas, which may occur in the next decades. The extent of thermally favorable zones within estuaries is projected to increase rapidly by mid-century, and reaching 100 % of the estuarine area by the end of the century. As has already happened in other areas of the world, the expansion and naturalization of the Pacific oyster on the Galician coast will likely affect the native communities and economic activities, making it necessary to implement monitoring and management strategies to mitigate its effect.

Low-dimensional chaos in the single wave model for self-consistent wave-particle Hamiltonian.

We analyze nonlinear aspects of the self-consistent wave-particle interaction using Hamiltonian dynamics in the single wave model, where the wave is modified due to the particle dynamics. This interaction plays an important role in the emergence of plasma instabilities and turbulence. The simplest case, where one particle (N=1) is coupled with one wave (M=1), is completely integrable, and the nonlinear effects reduce to the wave potential pulsating while the particle either remains trapped or circulates forever. On increasing the number of particles ( N=2, M=1), integrability is lost and chaos develops. Our analyses identify the two standard ways for chaos to appear and grow (the homoclinic tangle born from a separatrix, and the resonance overlap near an elliptic fixed point). Moreover, a strong form of chaos occurs when the energy is high enough for the wave amplitude to vanish occasionally.

Modeling salinity drop in estuarine areas under extreme precipitation events within a context of climate change: Effect on bivalve mortality in Galician Rías Baixas.

The mortality of infaunal bivalves (Venerupis corrugata, Cerastoderma edule, Ruditapes decussatus and Ruditapes philippinarum) due to a drop in salinity caused by extreme precipitation events in estuarine areas has been analyzed within a context of climate change. The Rías Baixas (NW Iberian Peninsula) were selected as a representative area of the estuarine environments where bivalve gathering is performed. Bivalve mortality under extreme precipitation events was analyzed both for historical (1990-2019) and future (2070-2099) periods. Precipitation data were retrieved from the Coordinated Regional Climate Downscaling Experiment (CORDEX) project under the Representative Concentration Pathway (RCP) 8.5 scenario and were converted into river discharges using the HEC-HMS hydrological model. The calculated river discharges were introduced into the Delft3D hydrodynamic model and simulations were performed in order to calculate transport conditions in the Rías Baixas. Salinity data were analyzed to estimate the mortality of the species due to salinity drops. In general, future conditions of moderate and severe mortality may be worse than historically observed, being more intense and covering larger areas. This is mainly observed under neap tides due to less dilution of freshwater plumes when compared with spring tides. Although all the Rías Baixas may be potentially affected, the impact will differ for each ria, being Arousa, where the highest discharges occur, the most affected. The differences among rias, especially those with a similar discharge pattern as Pontevedra and Vigo, suggest that bathymetric features also play a key role in the extent of the area affected by mortality.

Familial hypercholesterolemia: Is there a role for PCSK9 and thrombin generation?

INTRODUCTION: Familial hypercholesterolemia (FH) is an autosomal dominant genetic disease. The prevalence of FH has previously been reported as 1 in 500 in the general population. This study aimed to evaluate the proprotein convertase subtilisin/kexin 9 (PCSK9) levels, lipid profile and thrombin generation in FH patients undergoing treatment or not. METHODS: Eighty individuals with FH were selected and distributed in 2 groups: individuals treated with statins alone or conjugate therapy (statin + ezetimibe) (T = 53) and those non treated (NT = 27). PCSK9 levels were determined by ELISA, the lipid profile by colorimetric enzyme method and thrombin generation assay (TGA) by CAT method. RESULTS: Individuals treated with conjugate therapy (statin + ezetimibe) showed a significant reduction in the levels of total cholesterol (TC) low density lipoprotein cholesterol (LDLc) and in the potential for thrombin generation (ETP with low and high concentration of tissue factor), compared to the treated individuals with monotherapy (statins). PCSK9 was positively correlated with increased levels of TC, LDLc and triglycerides, while TGA parameters were positively correlated with PCSK9 and lipid profile. CONCLUSION: PCSK9 levels appear to be associated with components of the lipid and hemostatic profiles, in addition to being influenced by age. In general, our findings suggest that combined therapy for the treatment of FH is associated with a significant improvement in both lipid and hemostatic profiles assessed by TGA, suggesting a reduction in atherogenic and thrombogenic risks and, therefore, more promising compared to the use of statin monotherapy.

The impact of climate change on the geographical distribution of habitat-forming macroalgae in the Rías Baixas.

In the current scenario of climate change characterized by a generalized warming, many species are facing local extinctions in areas with conditions near their thermal tolerance threshold. At present, the southern limit of the geographical distribution of several habitat-forming algae of cold-temperate affinities is located in the Northwest Iberian Peninsula, and the Rías Baixas may be acting as contemporary refugia at the range edge. Therefore, it is necessary to analyze future changes induced by ocean warming in this area that may induce changes in macroalgae populations. The Delft3D-Flow model forced with climatic data was used to calculate July-August sea surface temperature (SST) for the present (1999-2018) and for the far future (2080-2099). Mean daily SST was used to develop and calibrate a mechanistic geographical distribution model based on the thermal survival threshold of two intertidal habitat-forming macroalgae, namely Himanthalia elongata (L.) S.F.Gray and Bifurcaria bifurcata R. Ross. Results show that H. elongata will become extinct in the Rías Baixas by the end of the century, while B. bifurcata will persist and may occupy potential free space left by the decline in H. elongata.

How can ocean warming at the NW Iberian Peninsula affect mussel aquaculture?

Understanding and forecasting future consequences of climate change in mussel aquaculture industry require the assessment of changes in physical parameters which may affect mussel growth. The FLOW module of Delft3D model forced with climatic data was validated and calibrated for the Rías Baixas (NW Iberian Peninsula), one of the areas with the highest mussel production in the world. This model was used to perform historical (1999-2018) and future (2080-2099) projections. Temperature and stratification water conditions were compared in order to determine at what extent climate change can affect mussel production. Thermal stress will increase in a non-homogeneous throughout the water column and the comfort level of mussels will be reduced by more than 60% in the upper layers and more than 30% in deep layers in most of the mussel raft polygons. Water column stratification will increase ~ 5-10 cycles h-1 in most of the polygons reducing the vertical exchange of nutrients and oxygen. Hereby changes in water temperature and stratification at the end of the century will not be favorable for mussel growth.

Oxygenated monoterpenes-rich volatile oils as potential antifungal agents for dermatophytes.

Essential oils (EOs) extracted from Lavandula luisieri and Cymbopogon citratus were tested for their antifungal activity against ten clinical isolates of dermatophytes isolated from cases of tinea pedis. Inhibition of conidial germination and antifungal drug/EO combination assay were tested on two ATCC reference strains of Trichophyton rubrum and Trichophyton mentagrophytes. EOs were characterised by high amount of oxygenated monoterpenes in their composition. Strong antifungal activity was observed for the majority of clinical strains, and fungicidal activity was demonstrated. Positive interaction between L. luisieri EO combined with terbinafine was observed against terbinafine-resistant strain (Tr ATCC MYA-4438). Significative reduction of the germination was observed above 100 µg mL-1. Both oils were safe to macrophage mammalian cells at tested concentration. This study describes the antifungal activity of L. luisieri and C. citratus EOs against dermatophytes, which could be useful in designing new formulations for topical treatments.

Optimization of Image Quality and Dose in Digital Mammography.

Nowadays, the optimization in digital mammography is one of the most important challenges in diagnostic radiology. The new digital technology has introduced additional elements to be considered in this scenario. A major goal of mammography is related to the detection of structures on the order of micrometers (µm) and the need to distinguish the different types of tissues, with very close density values. The diagnosis in mammography faces the difficulty that the breast tissues and pathological findings have very close linear attenuation coefficients within the energy range used in mammography. The aim of this study was to develop a methodology for optimizing exposure parameters of digital mammography based on a new Figure of Merit: FOM ≡ (IQFinv)2/AGD, considering the image quality and dose. The study was conducted using the digital mammography Senographe DS/GE, and CDMAM and TORMAM phantoms. The characterization of clinical practice, carried out in the mammography system under study, was performed considering different breast thicknesses, the technical parameters of exposure, and processing options of images used by the equipment's automatic exposure system. The results showed a difference between the values of the optimized parameters and those ones chosen by the automatic system of the mammography unit, specifically for small breast. The optimized exposure parameters showed better results than those obtained by the automatic system of the mammography, for the image quality parameters and its impact on detection of breast structures when analyzed by radiologists.

How will Somali coastal upwelling evolve under future warming scenarios?

Somali upwelling system, the fifth in the world, presents some unique features compared with the other major upwelling systems: 1) it is a Western Boundary Upwelling System located near the Equator and 2) upwelling affects the moisture responsible for monsoon rainfall. The intensity of Somali coastal upwelling during summer was projected for the twenty first century by means of an ensemble of Global Climate Models and Regional Climate Models within the framework of CMIP5 and CORDEX projects, respectively. Regardless global or regional circulation models and the chosen greenhouse warming scenario, the strengthening of Somali coastal upwelling, which increases with latitude, is even higher than observed for the Eastern Boundary Upwelling System. In addition, coastal upwelling strengthening is mainly due to Ekman transport since Ekman pumping shows no clear trend for most of the latitudes. Projected land-sea air temperature and pressure show a clear intensification of land-sea thermal and pressure gradient as a consequence of the global warming, which is likely to affect the strengthening of Somali upwelling verifying the hypothesis of Bakun. As a consequence, projected sea surface temperature warming is less intense nearshore than at oceanic locations, especially at latitudes where upwelling strengthening is more intense.

Matrix metalloproteinase 9 -1562C/T polymorphism increased protein levels in patients with colorectal cancer in a sample from southeastern Brazil.

We examined whether the allelic and/or genotypic profile of locus -1562C/T of the matrix metalloproteinase (MMP-9) gene influences the protein expression levels of MMP-9 in patients with colorectal cancer (CRC) compared with controls. A total of 104 patients with CRC and 84 controls were evaluated. Peripheral blood was collected from both groups and DNA extraction was performed for -1562C/T genotyping; the plasma was used for MMP-9 quantification. The CT genotype was associated with increased MMP-9 expression (P = 0.0211). High levels of protein, independently of polymorphisms, were observed in the patient group (P < 0.0001) compared to controls. Mucinous tumors with signet ring cells were more frequent in females (P = 0.0177). Overall, patients older than 50 years showed a significant risk of developing CRC (P = 0.0001). MMP-9 plasma expression was increased in patients with CRC compared to controls, particularly in those with the heterozygous -1562CT genotype.

The prion-related protein (testis-specific) gene (PRNT) is highly polymorphic in Portuguese sheep.

The objective of this study was to search for polymorphisms in the ovine prion-related protein (testis-specific) gene (PRNT). Sampling included 567 sheep from eight Portuguese breeds. The PRNT gene-coding region was analyzed by single-strand conformation polymorphism and sequencing, allowing the identification of the first ovine PRNT polymorphisms, in codons 6, 38, 43 and 48: c.17C>T (p.Ser6Phe, which disrupts a consensus arginine-X-X-serine/threonine motif); c.112G>C (p.Gly38>Arg); c.129T>C and c.144A>G (synonymous) respectively. Polymorphisms in codons 6, 38 and 48 occur simultaneously in 50.6% of the animals, 38.8% presenting as heterozygous. To study the distribution of the polymorphism in codon 43, a restriction fragment length polymorphism analysis was performed. Polymorphic variant c.129C, identified in 89.8% of the animals with 32.8% presented as heterozygous, was considered the wild genotype in Portuguese sheep. Eight different haplotypes which have comparable distribution in all breeds were identified for the PRNT gene. In conclusion, the PRNT coding region is highly polymorphic in sheep, unlike the prion protein 2 dublet gene (PRND), in which we previously found only one synonymous substitution (c.78G>A), in codon 26. The absence or reduced number of PRND heterozygotes (c.78G>A) was significantly associated with three PRNT haplotypes (17C-112G-129T-144A,17CT-112GC-129CT-144AG and 17T-112C-129C-144G), and the only three animals found homozygous at c.78A had the 17C-112G-129C-144A PRNT haplotype. These results constitute evidence of an association between polymorphic variation in PRND and PRNT genes, as has already been observed for PRND and prion protein gene (PRNP).

Activity of Thymus capitellatus volatile extract, 1,8-cineole and borneol against Leishmania species.

In the search for new leishmanicidal agents, Thymus capitellatus Hoffmanns. & Link (family Lamiaceae) volatile extract and its major compounds, 1,8-cineole and borneol, were tested against Leishmania infantum, Leishmania tropica and Leishmania major. Plant volatile extract (essential oil) was analysed by GC and GC-MS and the activity of essential oil on Leishmania promastigotes viability was assessed using tetrazolium-dye colorimetric method (MTT). The MTT test was also used to assess the cytotoxicity of essential oil on macrophages and bovine aortic endothelial cells. Effects on parasites were also analyzed by flow cytometry in order to assess mitochondrial transmembrane electrochemical gradient (JC-1), analyze phosphatidylserine externalization (annexin V-FITC, propidium iodide) and evaluate cell cycle (DNase-free, RNase, PI). Morphological and ultrastructural studies were performed by light, scanning and transmission electron microscopy. T. capitellatus volatile extract exhibited anti-parasite activity on Leishmania species, with IC50 values ranging from 35 to 62 µg/ml. However, major compounds 1,8-cineole and borneol did not showed biological activity suggesting that these monoterpenes are not responsible for the antileishmanial activity of T. capitellatus essential oil. Appearance of aberrant-shaped cells, mitochondrial swelling and autophagosomal structures were some of the ultrastructural alterations exhibited among treated promastigote cells. T. capitellatus promoted leishmanicidal effect by triggering a programmed cell death as evidenced by externalization of phosphatidylserine, loss of mitochondrial membrane potential, and cell-cycle arrest at the G(0)/G(1) phase. The volatile extract did not induced cytotoxic effects on mammalian cells. Taken together, these results suggest that T. capitellatus may represent a valuable source for therapeutic control of leishmaniasis in humans and animals.

Chaotic particle heating due to an obliquely propagating wave in a magnetized plasma.

We study the dynamics of a relativistic charged particle in the presence of a uniform magnetic field and a stationary electrostatic wave that propagates at an arbitrary angle. The wave is considered as a series of periodic pulses which allows us to derive an exact map for the system. In particular, we investigate the heating process of an initially low-energy particle. It is found that abrupt changes in the maximum energy attained by the particle may occur as the angle between the wave propagation and the magnetic field varies. To determine what is the mechanism behind this phenomenon a reduced Hamiltonian that retains the important dynamical features is obtained. Using both Poincaré plots and perturbation theory, we identify that a separatrix reconnection is the key mechanism for the abrupt change in particle response.

Alternate islands of multiple isochronous chains in wave-particle interactions.

We analyze the dynamics of a relativistic particle moving in a uniform magnetic field and perturbed by a standing electrostatic wave. We show that a pulsed wave produces an infinite number of perturbative terms with the same winding number, which may generate islands in the same region of phase space. As a consequence, the number of isochronous island chains varies as a function of the wave parameters. We observe that in all the resonances, the number of chains is related to the amplitude of the various resonant terms. We determine analytically the position of the periodic points and the number of island chains as a function of the wave number and wave period. Such information is very important when one is concerned with regular particle acceleration, since it is necessary to adjust the initial conditions of the particle to obtain the maximum acceleration.

'Candidatus Liberibacter asiaticus' Titers in Citrus and Acquisition Rates by Diaphorina citri Are Decreased by Higher Temperature.

'Candidatus Liberibacter asiaticus' is the most prevalent Liberibacter sp. associated with huanglongbing (HLB) in Brazil. Within São Paulo state (SP), HLB has spread more rapidly to and reached higher incidence in regions with relatively mild (cooler) summer temperatures. This suggests that climate can influence disease spread and severity. 'Ca. L. asiaticus' titers on soft, immature leaves from infected 'Valencia' sweet orange plants exposed to different temperature regimes and adult Diaphorina citri fed for 48 h on these plants for 'Ca. L. asiaticus' acquisition were determined by quantitative polymerase chain reaction in two experiments. The first experiment included plants with three levels of infection, three incubation periods (IPs), and air temperatures favorable (14.6 to 28°C) and unfavorable (24 to 38°C) to 'Ca. L. asiaticus'. The second included plants with severe late-stage infections, 10 IPs (based on 3-day intervals over 27 days), and three air temperature regimes (12 to 24, 18 to 30, and 24 to 38°C). Overall, 'Ca. L. asiaticus' titers and the percentages of 'Ca. L. asiaticus'-positive psyllids were lower in plants maintained at the warmer temperature regime (24 to 38°C) than in plants maintained in the cooler regimes. The results suggest that the lower incidence and slower spread of 'Ca. L. asiaticus' to warmer regions of SP are related to the influence of ambient temperatures on titers of 'Ca. L. asiaticus' in leaves.

Controlling chaos in wave-particle interactions.

We analyze the behavior of a relativistic particle moving under the influence of a uniform magnetic field and a stationary electrostatic wave. We work with a set of pulsed waves that allows us to obtain an exact map for the system. We also use a method of control for near-integrable Hamiltonians that consists of the addition of a small and simple control term to the system. This control term creates invariant tori in phase space that prevent chaos from spreading to large regions, making the controlled dynamics more regular. We show numerically that the control term just slightly modifies the system but is able to drastically reduce chaos with a low additional cost of energy. Moreover, we discuss how the control of chaos and the consequent recovery of regular trajectories in phase space are useful to improve regular particle acceleration.

Monoterpenic aldehydes as potential anti-Leishmania agents: activity of Cymbopogon citratus and citral on L. infantum, L. tropica and L. major.

In order to contribute for the search of new drugs for leishmaniasis, we study the susceptibility of Leishmania infantum, Leishmania tropica and Leishmania major to Cymbopogon citratus essential oil and major compounds, mrycene and citral. C. citratus and citral were the most active inhibiting L. infantum, L. tropica and L. major growth at IC(50) concentrations ranging from 25 to 52 µg/ml and from 34 to 42 µg/ml, respectively. L. infantum promastigotes exposed to essential oil and citral underwent considerable ultrastructural alterations, namely mitochondrial and kinetoplast swelling, autophagosomal structures, disruption of nuclear membrane and nuclear chromatin condensation. C. citratus essential oil and citral promoted the leishmanicidal effect by triggering a programmed cell death. In fact, the leishmanicidal activity was mediated via apoptosis as evidenced by externalization of phosphatidylserine, loss of mitochondrial membrane potential, and cell-cycle arrest at the G(0)/G(1) phase. Taken together, ours findings lead us to propose that citral was responsible for anti-Leishmania activity of the C. citratus and both may represent a valuable source for therapeutic control of leishmaniasis.