Unstable environmental conditions constrain the fine-tune between opsin sensitivity and underwater light in an Amazon forest stream fish.

Visual adaptations can stem from variations in amino acid composition, chromophore utilization, and differential opsin gene expression levels, enabling individuals to adjust their light sensitivity to environmental lighting conditions. In stable environments, adaptations often involve amino acid substitutions, whereas in unstable conditions, differential gene expression may be a more relevant mechanism. Amazon forest streams present diverse underwater lighting conditions and experience short-term water colour fluctuations. In these environments, it is less likely for genetic and amino acid sequences to undergo modifications that tailor opsin proteins to the prevailing lighting conditions, particularly in species having several copies of the same gene. The sailfin tetra, Crenuchus spilurus, inhabits black and clear water Amazon forest streams. The long-wavelength sensitivity (LWS) is an important component for foraging and courtship. Here, we investigated LWS opsin genes in the sailfin tetra. Three copies of LWS1 and two copies of LWS2 genes were found. The maximum absorbance wavelength (λmax) estimated from the amino acid sequences of LWS1 genes exhibited variation among the different copies. In contrast, the copies of LWS2 genes showed identical expected λmax values. Although the amino acid positions affecting λmax varied among LWS genes, they remained consistent among populations living in different water colours. The relative expression levels of LWS genes differed between gene copies. While not formally tested, our results suggest that in fluctuating environments, visual adaptations may primarily stem from alterations in gene expression profiles and/or chromophore usage rather than precise genetic tuning of protein light sensitivity to environmental lighting conditions.

Improving the standards for gut microbiome analysis of fecal samples: insights from the field biology of Japanese macaques on Yakushima Island.

Fecal DNA-based 16S ribosomal RNA (rRNA) gene sequencing using next-generation sequencers allows us to understand the dynamic gut microbiome adaptation of animals to their specific habitats. Conventional techniques of fecal microbiome analysis have been developed within the broad contexts defined by human biology; hence, many of these techniques are not immediately applicable to wild nonhuman primates. In order to establish a standard experimental protocol for the analysis of the gut microbiomes of wild animals, we selected the Japanese macaques (Macaca fuscata yakui) on Yakushima Island. We tested different protocols for each stage of fecal sample processing: storage, DNA extraction, and choice of the sequencing region in the bacterial 16S rRNA gene. We also analyzed the gut microbiome of captive Japanese macaques as the control. The comparison of samples obtained from identical macaques but subjected to different protocols showed that the tested storage methods (RNAlater and lysis buffer) produced effectively the same composition of bacterial operational taxonomic units (OTUs) as the standard frozen storage method, although the relative abundance of each OTU was quantitatively affected. Taxonomic assignment of the detected bacterial groups was also significantly affected by the region being sequenced, indicating that sequencing regions and the corresponding polymerase chain reaction (PCR) primer pairs for the 16S rRNA gene should be carefully selected. This study improves the current standard methods for microbiome analysis in wild nonhuman primates. Japanese macaques were shown to be a suitable model for understanding microbiome adaptation to various environments.

Male replacement and stability of territorial boundary in a group of agile gibbons (Hylobates agilis agilis) in West Sumatra, Indonesia.

We report membership change in a group of wild agile gibbons, Hylobates agilis agilis, in West Sumatra, Indonesia. During 6-month observational periods, we focused on a particular unit of individuals known as the B group. We confirmed that the group consisted of five individuals: one adult female, one adult male, one subadult male, one subadult female, and one infant male. During our observations, the resident adult male and the two subadult individuals dispersed or disappeared, and a new adult male took over the group. We examined the effects of the male replacement on the territorial boundary, using the auditory census technique. The boundary was stable. We also documented the succession of the home range. Our results indicate a flexible social structure in this species and contribute some useful data to an ongoing debate on their social dynamics.

Effects of proximity and activity on visual and auditory monitoring in wild Japanese macaques.

Group-living primates monitor group members to maintain the spatial cohesiveness of the group. We examined the possibility that visual scanning (turning the head for more than 3 sec) and contact calls (coo calls) function as visual and auditory monitoring behaviors to avoid separation from group members in wild Japanese macaques. The rate of visual scanning increased as proximity to group members decreased and as mobile activities (foraging and moving) increased, compared with immobile activities (resting and grooming). However, the rate of contact calls varied differently with proximity and activities. During resting and moving, the rate of contact calls increased as proximity decreased. In contrast, the rate increased with closer proximity during feeding. Visual scanning during all activities and contact calls during resting and moving increased when the group members were likely to spread over a larger area, suggesting that these behaviors functioned as monitoring of group members to avoid separation from the group. Contact calls also increased when the group members stayed in close proximity during foraging, suggesting that this behavior was also associated with competitive situations. Contact calls may also function to ease tension or maintain distance to avoid conflict in competitive situations.

Effects of caller activity and habitat visibility on contact call rate of wild Japanese macaques (Macaca fuscata).

A major function of contact calls in nonhuman primates is to maintain spatial cohesion among individuals in a group. The risks of spatial/visual separation from the group are likely to affect auditory contact behavior, in particular by increasing the call rate. We tested whether the risk of separation influences coo call emission by investigating the variation in call rate among behavioral contexts in two wild populations of Japanese macaques (Macaca fuscata). We focused on caller activity and the degree of visibility within the habitat as primary potential factors mediating call rate. We first estimated the habitat visibility of the two research sites at Yakushima Island (YK) and Kinkazan Island (KZ), Japan. The habitat visibility of YK was significantly more restricted than that of KZ. We then compared the call rate of 20 adult and 12 juvenile female macaques between the two wild populations to examine the potential effects of environmental differences. Both populations had a lower call rate during grooming than during feeding and moving, which are behaviors associated to higher interindividual distances. The call rate of YK adult females was significantly greater than that of both juveniles and KZ adult females, independently of activity. The call rate increased as macaques matured in the YK population, but not in the KZ population, suggesting that different developmental processes involved in contact calling of the two populations. Our findings suggest that separation risk influences call rate, and also imply a possibility of social influence that social structure change effects on the call rates.

Effects of proximity and behavioral context on acoustic variation in the coo calls of Japanese macaques.

Acoustic features of coo calls in Japanese macaques (Macaca fuscata) show large and graded variation. To explore the relevance of acoustic variation in coo calls, I examined whether acoustic features differed by the caller's activity and proximity to group members. The subjects were five adult females from a wild, habituated group of Japanese macaques consisting of 23 individuals. Coo calls from the five females were recorded with their activity and proximity to group members. Acoustic features of 280 calls were measured with a sound spectrograph. Some of the acoustic variables differed by proximity but not by activity. The callers produced coo calls with larger frequency modulation and longer duration when they were far from group members compared to when they were near another member. The results suggest that Japanese macaques produce calls with more detectable and locatable features depending on the proximity to group members.

A study on the social structure and dispersal patterns of hamadryas baboons living in a commensal group at Taif, Saudi Arabia.

Three levels of hamadryas social structure--the one male unit (OMU), the band, and the troop--have been observed at all sites studied, but a fourth--the clan--has been observed at only one site, Erer-Gota, Ethiopia, during a longitudinal check of the dispersion of identified individuals. The clan is important since it appears to provide the basis for male philopatry, although comparative data is needed from other sites to confirm this. We studied a huge commensal group of hamadryas baboons (over 600 animals) in Saudi Arabia. We put ear tags on baboons between 1998 and 2004 and analyzed social structure, relying on the interactions of these tagged animals by focusing especially on their dispersal patterns from OMUs. OMU membership tended to be looser than that of the Ethiopian hamadryas. Females tended to shift between OMUs on an individual basis in our study group, whereas the collapse of an OMU was a major occasion of adult female transfer in Ethiopia. We found neither stable bands (a "band" in our study group was defined as a regional assemblage of OMUs) nor clans that lasted for several years. Some OMUs moved and transferred into neighboring areas over both the short and long term. Further, some post-adolescent males appeared to move out of the study area. The ratio of adult females in an OMU in our study group was larger than for any other documented study site, and this may be the reason for enhanced female transfer between OMUs. A large proportion of the adolescent females showed no clear membership to OMUs, and no "initial units" (commonly observed in Ethiopia) were discernible. The ease with which young males acquired adult females at the study site must have disrupted the formation of a clan, a "male-bonded society."

Acoustic features contributing to the individuality of wild agile gibbon (Hylobates agilis agilis) songs.

We examined acoustic individuality in wild agile gibbon Hylobates agilis agilis and determined the acoustic variables that contribute to individual discrimination using multivariate analyses. We recorded 125 female-specific songs (great calls) from six groups in west Sumatra and measured 58 acoustic variables for each great call. We performed principal component analysis to summarize the 58 variables into six acoustic principal components (PCs). Generally, each PC corresponded to a part of the great call. Significant individual differences were found across six individual gibbons in each of the six PCs. Moreover, strong acoustic individuality was found in the introductory and climax parts of the great call. In contrast, the terminal part contributed little to individual identification. Discriminant analysis showed that these PCs contributed to individual discrimination with high repeatability. Although we cannot conclude that agile gibbon use these acoustic components for individual discrimination, they are potential candidates for individual recognition.

Seasonal variation in fecal testosterone levels in free-ranging male Japanese macaques.

Seasonal variation in fecal testosterone levels in free-ranging male Japanese macaques (Macaca fuscata) was examined with reference to their dominance rank and age class. Six adult (>or=7 years old, three higher-ranking and three lower-ranking) and four adolescent (5-6 years old, two higher-ranking and two lower-ranking) males were selected as target animals. Fecal samples of these males were collected during the first 3-5 days of each month and analyzed by the method developed by Barrett et al. [Primates 43:29-39, 2002 b]. Testosterone levels varied significantly across the 12 months, and were highest in the early and middle parts of the mating season (i.e., October and November). Higher-ranking adult males displayed a peak testosterone level in October, whereas lower-ranking adults had no clear peak in the mating season. Such a difference in testosterone peaks in males could provide higher-ranking males more opportunities to fertilize females at first ovulation in the mating season than lower-ranking males.

Long-term variation in fruiting and the food habits of wild Japanese macaques on Kinkazan Island, northern Japan.

We studied the relationship between the food habits of Japanese macaques (Macaca fuscata) and the availability of nuts (Fagus crenata, Zelkova serrata, Carpinus spp., and Torreya nucifera) on Kinkazan Island, northern Japan, from 1997 to 2005 to examine the long-term variations in both food habits and availability. The food habits of the monkeys showed clear seasonal changes: the staple foods were woody leaves and flowers in spring (May and June), woody leaves and seeds or fruits other than nuts in summer (July and August), nuts and seeds or fruits other than nuts in fall (September-November), and herbaceous plants in winter (December-April). The availability of nuts, combinations of masting species, and energy production varied among years. Food habits varied among years, but the magnitude of variability of food habits differed among seasons, with large variability during summer and winter, and small variability in spring. Food availability was poor in summer and winter, but in several years the monkeys were able to consume nuts during those seasons. We emphasize the importance of conducting long-term studies on both food availability and the food habits of animals in the temperate zone.

Hormone profiles and reproductive characteristics in wild female Japanese macaques (Macaca fuscata).

In this study we investigated the reproductive characteristics of wild female Japanese macaques (Macaca fuscata fuscata) in 2 nonconsecutive years using noninvasive methods to monitor physiological events. We detected ovulation dates and ascertained conceptions from fecal hormone profiles. First ovulations occurred from middle October to early November in 1997, and from middle to late November in 1999. Most females conceived during their first ovarian cycle. On average, postconception bleeding occurred 18.4 days after ovulation, and menstruation occurred 13.7 days after ovulation. The average gestation length was 176.3 days. The average degree of facial redness and the percentage of females that copulated synchronously changed across the ovarian cycle and peaked in the periovulatory period. Although prolonged periods of postconception copulation have been reported in previous studies, they did not occur in this study, which suggests that such behavior may not be a species-typical characteristic. Female fertility varied between the 2 years. The copulation rates of females with no infant <1 year of age were 100% (14/14) in 1997 and 45.5% (5/11) in 1999. The ovulation rates of the female subjects that we chose for hormonal assays were 100% (9/9) in 1997 and 50.0% (3/6) in 1999. Th conception rates of these selected females were 100% (9/9) in 1997 and 16.7% (1/6) in 1999. The birth rates (the number of females that delivered divided by the total number of adult females in the troop) were 73.3% (11/15) in 1998 and 6.7% (1/15) in 2000. The modified birth rates (the number of females that delivered /the number of adult females with no infant <1 year of age) x 100 were 78.6% (11/14) in 1998 and 9.1% (1/11) in 2000.