Long-term annual mapping and spatial-temporal dynamic analysis of winter wheat in Shandong Province based on spatial-temporal data fusion (2000-2022).

Winter wheat, as one of the world's key staple crops, plays a crucial role in ensuring food security and shaping international food trade policies. However, there has been a relative scarcity of high-resolution, long time-series winter wheat maps over the past few decades. This study utilized Landsat and Sentinel-2 data to produce maps depicting winter wheat distribution in Google Earth Engine (GEE). We further analyzed the comprehensive spatial-temporal dynamics of winter wheat cultivation in Shandong Province, China. The gap filling and Savitzky-Golay filter method (GF-SG) was applied to address temporal discontinuities in the Landsat NDVI (Normalized Difference Vegetation Index) time series. Six features based on phenological characteristics were used to distinguish winter wheat from other land cover types. The resulting maps spanned from 2000 to 2022, featuring a 30-m resolution from 2000 to 2017 and an improved 10-m resolution from 2018 to 2022. The overall accuracy of these maps ranged from 80.5 to 93.3%, with Kappa coefficients ranging from 71.3 to 909% and F1 scores from 84.2 to 96.9%. Over the analyzed period, the area dedicated to winter wheat cultivation experienced a decline from 2000 to 2011. However, a notable shift occurred with an increase in winter wheat acreage observed from 2014 to 2017 and a subsequent rise from 2018 to 2022. This research highlights the viability of using satellite observation data for the long-term mapping and monitoring of winter wheat. The proposed methodology has long-term implications for extending this mapping and monitoring approach to other similar areas.

DDX21 functions as a potential novel oncopromoter in pancreatic ductal adenocarcinoma: a comprehensive analysis of the DExD box family.

BACKGROUND: Pancreatic ductal adenocarcinoma (PDAC) is a highly lethal tumor with an ill-defined pathogenesis. DExD box (DDX) family genes are widely distributed and involved in various RNA metabolism and cellular biogenesis; their dysregulation is associated with aberrant cellular processes and malignancies. However, the prognostic significance and expression patterns of the DDX family in PDAC are not fully understood. The present study aimed to explore the clinical value of DDX genes in PDAC. METHODS: Differentially expressed DDX genes were identified. DDX genes related to prognostic signatures were further investigated using LASSO Cox regression analysis. DDX21 protein expression was analyzed using the UALCAN and human protein atlas (HPA) online tools and confirmed in 40 paired PDAC and normal tissues through Tissue Microarrays (TMA). The independent prognostic significance of DDX21 in PDAC was determined through the construction of nomogram models and calibration curves. The functional roles of DDX21 were investigated using gene ontology (GO), Kyoto Encyclopedia of Genes and Genomes (KEGG), and Gene Set Enrichment Analysis (GSEA). Cell proliferation, invasion, and migration were assessed using Cell Counting Kit-8, colony formation, Transwell, and wound healing assays. RESULTS: Upregulation of genes related to prognostic signatures (DDX10, DDX21, DDX60, and DDX60L) was significantly associated with poor prognosis of patients with PDAC based on survival and recurrence time. Considering the expression profile and prognostic values of the signature-related genes, DDX21 was finally selected for further exploration. DDX21 was overexpressed significantly at both the mRNA and protein levels in PDAC compared to normal pancreatic tissues. DDX21 expression, pathological stage, and residual tumor were significant independent prognostic indicators in PDAC. Moreover, functional enrichment analysis revealed that Genes co-expressed with DDX21 are predominantly involved in RNA metabolism, helicase activity, ribosome biogenesis, cell cycle, and various cancer-related pathways, such as PI3K/Akt signaling pathway and TGF-ß signaling pathway. Furthermore, in vitro experiments confirmed that the knockdown of DDX21 significantly reduced MIA PaCa-2 cell viability, proliferation, migration, and invasion. CONCLUSIONS: Four signature-related genes could relatively precisely predict the prognosis of patients with PDAC. Specifically, DDX21 upregulation may signal an unfavorable prognosis by negatively affecting the biological properties of PDAC cells. DDX21 may be considered as a candidate therapeutic target in PDAC.

Comparative Metagenomic Analysis Reveals Rhizosphere Microbiome Assembly and Functional Adaptation Changes Caused by Clubroot Disease in Chinese Cabbage.

Clubroot is a major disease and severe threat to Chinese cabbage, and it is caused by the pathogen Plasmodiophora brassicae Woron. This pathogen is an obligate biotrophic protist and can persist in soil in the form of resting spores for more than 18 years, which can easily be transmitted through a number of agents, resulting in significant economic losses to global Chinese cabbage production. Rhizosphere microbiomes play fundamental roles in the occurrence and development of plant diseases. The changes in the rhizosphere microorganisms could reveal the severity of plant diseases and provide the basis for their control. Here, we studied the rhizosphere microbiota after clubroot disease infections with different severities by employing metagenomic sequencing, with the aim of exploring the relationships between plant health, rhizosphere microbial communities, and soil environments; then, we identified potential biomarker microbes of clubroot disease. The results showed that clubroot disease severity significantly affected the microbial community composition and structure of the rhizosphere soil, and microbial functions were also dramatically influenced by it. Four different microbes that had great potential in the biocontrol of clubroot disease were identified from the obtained results; they were the genera Pseudomonas, Gemmatimonas, Sphingomonas, and Nocardioides. Soil pH, organic matter contents, total nitrogen, and cation exchange capacity were the major environmental factors modulating plant microbiome assembly. In addition, microbial environmental information processing was extremely strengthened when the plant was subjected to pathogen invasion, but weakened when the disease became serious. In particular, oxidative phosphorylation and glycerol-1-phosphatase might have critical functions in enhancing Chinese cabbage's resistance to clubroot disease. This work revealed the interactions and potential mechanisms among Chinese cabbage, soil environmental factors, clubroot disease, and microbial community structure and functions, which may provide a novel foundation for further studies using microbiological or metabolic methods to develop disease-resistant cultivation technologies.

TurboID-mediated proximity labeling technologies to identify virus co-receptors.

Virus receptors determine the tissue tropism of viruses and have a certain relationship with the clinical outcomes caused by viral infection, which is of great importance for the identification of virus receptors to understand the infection mechanism of viruses and to develop entry inhibitor. Proximity labeling (PL) is a new technique for studying protein-protein interactions, but it has not yet been applied to the identification of virus receptors or co-receptors. Here, we attempt to identify co-receptor of SARS-CoV-2 by employing TurboID-catalyzed PL. The membrane protein angiotensin-converting enzyme 2 (ACE2) was employed as a bait and conjugated to TurboID, and a A549 cell line with stable expression of ACE2-TurboID was constructed. SARS-CoV-2 pseudovirus were incubated with ACE2-TurboID stably expressed cell lines in the presence of biotin and ATP, which could initiate the catalytic activity of TurboID and tag adjacent endogenous proteins with biotin. Subsequently, the biotinylated proteins were harvested and identified by mass spectrometry. We identified a membrane protein, AXL, that has been functionally shown to mediate SARS-CoV-2 entry into host cells. Our data suggest that PL could be used to identify co-receptors for virus entry.

Novel f-CaO soft sensor for cement clinker based on integrated model of dual-parallel structure.

Aiming at the problem that the cement production process is inherently affected by uncertainty, time delay, and strong coupling among variables, this paper proposed a novel soft sensor of free calcium oxide in a cement clinker. The model utilizes a dual-parallel integrated structure with an optimized integration of one-dimensional convolutional neural networks, long and short-term memory networks, graphical neural networks, and extreme gradient boosting. The proposed model can mitigate the risks associated with overfitting while incorporating the strengths of each individual model and excels in extracting both local and global features as well as temporal and spatial characteristics from the original time series data, ensuring its stability. The experimental results demonstrate that this dual-parallel integrated model exhibits superior robustness, predictive accuracy, and generalization capabilities when compared to single models or enhancements made to other deep learning algorithms.

Similarity of Chinese and Pakistani oral microbiome.

Oral microbiota is vital for human health and can be affected by various factors (i.e. diets, ethnicity). However, few studies have compared oral microbiota of individuals from different nationalities in the same environment. Here, we explored the assembly and interaction of oral microbial communities of Chinese and Pakistanis in one university. Firmicutes and Proteobacteria were the predominant microorganisms in the oral cavity of Chinese and Pakistanis. Streptococcus and Neisseria were the dominant genera of China, while Streptococcus and Haemophilus were the dominant genera of Pakistanis. In addition, the oral community membership and structure were not influenced by season, Chinese/Pakistani student and gender, reflecting the stability of the human oral microbiome. The beta diversity of oral microbiomes between Chinese and Pakistanis significantly differed in winter, but not in spring. The alpha diversity of Chinese students and Pakistani students was similar. Moreover, oral microbial community of both Chinese and Pakistani students was mainly driven by stochastic processes. The microbial network of Chinese was more complexity and stability than that of Pakistanis. Our study uncovers the characteristics of human oral microbiota, which is of great significance for oral and human health.

Saracatinib prompts hemin-induced K562 erythroid differentiation but suppresses erythropoiesis of hematopoietic stem cells.

Human myeloid leukemia cells (such as K562) could be used for the study of erythropoiesis, and mature erythroid markers and globins could be induced during leukemia cell differentiation; however, the pathways involved are different compared with those of hematopoietic stem cells (HSCs).We identified the differentially expressed genes (DEGs) of K562 cells and HSCs associated with stem cells and erythroid differentiation. Furthermore, we showed that hemin-induced differentiation of K562 cells could be induced by serum starvation or treatment with the tyrosine kinase inhibitor saracatinib. However, erythroid differentiation of HSCs was inhibited by the deprivation of the important serum component erythropoietin (EPO) or treatment with saracatinib. Finally, we found that the mRNA expression of K562 cells and HSCs was different during saracatinib-treated erythroid differentiation, and the DEGs of K562 cells and HSCs associated with tyrosine-protein kinase were identified.These findings elucidated the cellular phenomenon of saracatinib induction during erythroid differentiation of K562 cells and HSCs, and the potential mechanism is the different mRNA expression profile of tyrosine-protein kinase in K562 cells and HSCs.

Prenatal diagnosis of dent disease type I with a nonsense pathogenic variant in CLCN5: a case study.

INTRODUCTION: Dent disease type I is a rare X-linked recessive renal tubular disease resulting from pathogenic variants in the CLCN5 gene. Due to the rarity of Dent disease type I and the diversity of its phenotypes, its clinical diagnosis is complex and poses a challenge to clinicians. METHODS: A foetus and a child from a 36-year-old pregnant woman with a birth history of abnormal children were enrolled in this study. Pregnant women undergo amniocentesis for prenatal diagnosis at the gestational age of 12+ 3 weeks. Chromosomal microarray (CMA) analysis and whole-exome sequencing (WES) were employed to investigate the chromosomal copy number and single gene variants. Literature retrieval and data analysis were performed for genotype and phenotype collection analysis. RESULTS: No chromosomal abnormalities or CNVs were detected in the entire family through karyotype and familial CMA analyses. WES identified a nonsense pathogenic variant in CLCN5 of the X chromosome, c.1942 C > T (exon 11, NM_000084), which was inherited from his mother, who exhibited regular clinical features. CONCLUSION: This study suggests that children with low-molecular-weight proteinuria and hypercalciuria should undergo prompt genetic testing to exclude Dent disease.

External validation of the FAMISH predicting score for early gastric cancer with endoscopic submucosal dissection.

OBJECTIVE: To externally validate the robustness of the FAMISH predicting score designed to estimate the risk of metachronous gastric lesions (MGLs) after endoscopic submucosal dissection (ESD) for early gastric cancer (EGC). METHODS: This multicenter, retrospective study included 618 patients with EGC who underwent curative ESD at two tertiary referral teaching hospitals between January 2014 and December 2019. FAMISH score was a composite indicator of age, sex, family history, corpus intestinal metaplasia, synchronous lesions, and H. pylori infection. Discrimination, calibration, and risk stratification of these scores were assessed. Associations between MGL characteristics and FAMISH scores were also explored. RESULTS: After a median follow-up period of 60 months, 83 of 618 patients (13.4%) developed MGL. The discrimination ability according to the area under the curve was 0.708 (95% CI, 0.645-0.772) for predicting the 5-year MGL. The calibration results showed good consistency between the predicted and actual MGL (Hosmer-Lemeshow, P  > 0.05). In terms of risk stratification, the 5-year MGL rates were 4.1% (95% CI, 1.6%-6.5%), 10.8% (95% CI, 7.2%-14.3%), and 32.1% (95% CI, 20.9%-41.7%) in the low-, intermediate-, and high-risk groups, respectively ( P  < 0.001). For patients with MGL, the curative resection rate of ESD was significantly higher in the low- and intermediate-risk groups than in the high-risk group (100% vs. 80%, P  = 0.037). CONCLUSION: The FAMISH predicting score was externally validated and can be generalized to an independent patient population. This adjuvant tool can assist in individual clinical decision-making.

In situ correction of various ß-thalassemia mutations in human hematopoietic stem cells.

ß-thalassemia (ß-thal) is the most common monogenic disorder caused by various mutations in the human hemoglobin ß (HBB) gene and affecting millions of people worldwide. Electroporation of Cas9 and single-guide RNA (sgRNA)-ribonucleoprotein (RNP) complex-mediated gene targeting in patient-derived hematopoietic stem cells (HSCs), followed by autologous transplantation, holds the promise to cure patients lacking a compatible bone marrow donor. In this study, a universal gene correction method was devised to achieve in situ correction of most types of HBB mutations by using validated CRISPR/sgRNA-RNP complexes and recombinant adeno-associated viral 6 (rAAV6) donor-mediated homology-directed repair (HDR) in HSCs. The gene-edited HSCs exhibited multi-lineage formation abilities, and the expression of ß-globin transcripts was restored in differentiated erythroid cells. The method was applied to efficiently correct different mutations in ß-thal patient-derived HSCs, and the edited HSCs retained the ability to engraft into the bone marrow of immunodeficient NOD-scid-IL2Rg-/- (NSI) mice. This study provides an efficient and safe approach for targeting HSCs by HDR at the HBB locus, which provides a potential therapeutic approach for treating other types of monogenic diseases in patient-specific HSCs.

Physical fitness of athletes under endurance training / Aptidão física dos atletas sob treinamento de resistência física / Aptitud física de los atletas bajo entrenamiento de resistencia física

ABSTRACT Introduction Athletes must have high sports skills and endurance to achieve good results in the field. Therefore, endurance training is very important among athletes. Objective Explore the application of endurance training in teaching athletes physical fitness. Methods In the form of a control experiment, 20 junior athletes were voluntary participants in this research. Divided into control and experimental groups, the control followed the usual training plan while the experimental group was added 1.5 hours of post-workout endurance training. Data was recorded and cataloged before and after the experiment. Results Both endurance and routine training can improve the physical fitness of athletes. The improvement of endurance training was shown to be superior to traditional training methods. For the athletes in the experimental group, in the 6-week process, the three-sport indexes showed a fluctuating optimization and significantly improved overall compared to before the experiment. Conclusion Endurance training has solid evidence of improving the physical fitness of athletes, including benefits related to ability and competitive performance. Therefore, further studies are recommended for its popularization. Level of evidence II; Therapeutic studies - investigation of treatment outcomes.

RESUMO Introdução Os atletas devem ter altas habilidades esportivas e alta resistência para alcançar bons resultados em campo. Portanto, o treinamento de resistência física é muito importante entre os esportistas. Objetivo Explorar a aplicação do treinamento de resistência física no ensino da aptidão física dos atletas. Métodos Na forma de experimento de controle, 20 atletas juniores foram participantes voluntários dessa pesquisa. Divididos entre grupos controle e experimental, o controle seguiu o plano de treinamento habitual enquanto ao grupo experimental foram acrescentadas 1,5 horas de treinamento de resistência física pós-treino. Os dados foram registrados e catalogados antes e depois do experimento. Resultados Tanto o treinamento de resistência física quanto o treinamento de rotina podem melhorar a aptidão física dos atletas. A melhoria do treinamento de resistência física mostrou-se superior aos métodos tradicionais de treinamento. Para os atletas do grupo experimental, no processo de 6 semanas, os três índices esportivos revelaram uma otimização flutuante e, de modo geral, foi significativamente aprimorado em comparação com o anterior ao experimento. Conclusão O treinamento de resistência física tem sólidas evidências de melhorar a aptidão física dos atletas, incluindo os benefícios relacionados à capacidade e desempenho competitivo. Portanto, recomenda-se maiores estudos para a sua popularização. Nível de evidência II; Estudos terapêuticos - investigação dos resultados do tratamento.

RESUMEN Introducción Los atletas deben tener altas capacidades deportivas y alta resistencia para alcanzar buenos resultados en campo. Por lo tanto, el entrenamiento de resistencia física es muy importante entre los atletas. Objetivo Explorar la aplicación del entrenamiento de resistencia física en la enseñanza de la aptitud física de los atletas. Métodos En forma de experimento de control, 20 atletas junior fueron participantes voluntarios en esta investigación. Divididos en grupos de control y experimental, el control siguió el plan de entrenamiento habitual, mientras que al grupo experimental se le añadió 1,5 horas de entrenamiento de resistencia después del entrenamiento. Los datos se registraron y catalogaron antes y después del experimento. Resultados Tanto el entrenamiento de resistencia como el de rutina pueden mejorar la aptitud física de los deportistas. La mejora del entrenamiento de resistencia demostró ser superior a los métodos de entrenamiento tradicionales. Para los atletas del grupo experimental, en el proceso de ٦ semanas, los tres índices deportivos mostraron una optimización fluctuante y, en general, mejoraron significativamente en comparación con el período previo al ensayo. Conclusión El entrenamiento de resistencia tiene pruebas sólidas de que mejora la aptitud física de los atletas, incluidos los beneficios relacionados con la capacidad competitiva y el rendimiento. Por lo tanto, se recomienda realizar más estudios para su popularización. Nivel de evidencia II; Estudios terapéuticos - investigación de los resultados del tratamiento.