Can accelerometer ear tags identify behavioural changes in sheep associated with parturition?

On-animal sensor systems provide an opportunity to monitor ewes during parturition, potentially reducing ewe and lamb mortality risk. This study investigated the capacity of machine learning (ML) behaviour classification to monitor changes in sheep behaviour around the time of lambing using ear-borne accelerometers. Accelerometers were attached to 27 ewes grazing a 4.4 ha paddock. Data were then classified based on three different ethograms: (i) detection of grazing, lying, standing, walking; (ii) detection of active behaviour; and (iii) detection of body posture. Proportion of time devoted to performing each behaviour and activity was then calculated at a daily and hourly scale. Frequency of posture change was also calculated on an hourly scale. Assessment of each metric using a linear mixed-effects model was conducted for the 7 days (day scale) or 12 h (hour scale) before and after lambing. For all physical movements, regardless of the ethogram, there was a change in the days surrounding lambing. This involved either a decrease (grazing, lying, active behaviour) or peak (standing, walking) on the day of parturition, with most values returning to either pre-partum or near-pre-partum levels (all P < 0.001). Hourly changes also occurred for all behaviours (all P < 0.001), the most marked being increased walking behaviour and frequency of posture change. These findings indicate ewes were more restless around the time of parturition. Further application of this research should focus on development of algorithms that can be used to identify onset of lambing and/or time of parturition in pasture-based ewes.

Shelter type and birth number influence the birth and death sites of lambs and ewe movement around lambing time.

A significant number of lambs born each yr in Australia die within 72 h of birth. Periods of high wind, combined with rain and low temperatures, can lead to marked increases in the level of mortality. Under these weather conditions mortality levels may be reduced with the provision of shelter, provided it is utilized by lambs. This study used GPS collars to determine the use of shelter by ewes and lambs, to compare the movement of ewes with twin lambs across 2 types of shelter (hedgerows and shrubs), while also comparing ewes with single and twin lambs in a single shelter type (hedgerows). Additionally, the birth sites of 364 lambs and death sites of 252 lambs were recorded across the 3 shelter type and litter size combinations (Twins in shrubs, Twins in hedgerows, Singles in hedgerows) plus an unsheltered group (Singles in unsheltered). A higher (P < 0.001) than randomly expected percentage of ewes lambed in the areas closest to both shelter types; in the shrub shelter 42% of ewes lambed within 2.5 m of shrub rows compared to an expected 11% based on the proportion of the paddock this area constituted. Despite the higher than expected percentage of ewes lambing close to the shelter rows, ewes in both twin lamb shelter types avoided the areas close to the shelter before and after lambing (Hedgerows-2.5 m; Shrubs- 6.25 m) and single bearing ewes showed no preference for or against these areas. With a high proportion of twin bearing ewes lambing close to the shelter, a design that reduces the potential for ewe and offspring separation while providing good shelter will offer the greatest potential reduction in newborn twin lamb mortality arising from exposure.

Drinking frequency effects on the performance of cattle: a systematic review.

This study used a systematic literature review methodology to determine whether there is evidence that drinking frequency has effects on cattle performance, what performance responses to drinking frequency are documented and how performance responses vary according to environmental and animal factors. Electronic databases were searched for English language articles with original data on at least one performance attribute (e.g. water intake, feed intake, live weight) of cattle in response to voluntary drinking frequency or controlled access periods to water. Sixteen experiments on dairy cows and 12 experiments on beef cattle were retrieved from the literature. For beef cattle, all experiments reported reduced water and feed intake with access to water once every second and/or third day compared with once-daily access. Median reductions of 15% and 25% in water intake and 16% and 9% in feed intake were found across experiments respectively. Live weight responses of beef cattle to access to water were limited and yielded positive, negative and no effects. For dairy cows, most experiments reported reduced water intake, milk yield and milk fat content with access to water twice or once daily compared with controls (ad libitum or ad libitum except at the dairy). Median reductions of 13% and 12% in water intake, 2% and 1% in milk yield and 1% and 2% in milk fat content were found across experiments respectively. Water availability effects on feed intake and live weight were very limited for dairy cows and yielded positive, neutral and negative effects. Season, climate, experiment conditions, animal class and animal genotype were identified to potentially influence intake responses of cattle. The review highlights a number of important gaps in the literature where future work is required to better understand the optimum drinking frequency of cattle and implications of water availability on health, welfare and performance.

Time is of the essence: an application of a relational event model for animal social networks.

Understanding how animal social relationships are created, maintained and severed has ecological and evolutionary significance. Animal social relationships are inferred from observations of interactions between animals; the pattern of interaction over time indicates the existence (or absence) of a social relationship. Autonomous behavioural recording technologies are increasingly being used to collect continuous interaction data on animal associations. However, continuous data sequences are typically aggregated to represent a relationship as part of one (or several) pictures of the network of relations among animals, in a way that parallels human social networks. This transformation entails loss of information about interaction timing and sequence, which are particularly important to understand the formation of relationships or their disruption. Here, we describe a new statistical model, termed the relational event model, that enables the analysis of fine-grained animal association data as a continuous time sequence without requiring aggregation of the data. We apply the model to a unique data set of interaction between familiar and unfamiliar steers during a series of 36 experiments to investigate the process of social disruption and relationship formation. We show how the model provides key insights into animal behaviour in terms of relationship building, the integration process of unfamiliar animals and group building dynamics. The relational event model is well suited to data structures that are common to animal behavioural studies and can therefore be applied to a range of social interaction data to understand animal social dynamics.

Using UHF proximity loggers to quantify male-female interactions: a scoping study of estrous activity in cattle.

Reproductive efficiency is an important determinant of profitable cattle breeding systems and the success of assisted reproductive techniques (ART) in wildlife conservation programs. Methods of estrous detection used in intensive beef and dairy cattle systems lack accuracy and remain the single biggest issue for improvement of reproductive rates and such methods are not practical for either large-scale extensive beef cattle enterprises or free-living mammalian species. Recent developments in UHF (ultra high frequency) proximity logger telemetry devices have been used to provide a continuous pair-wise measure of associations between individual animals for both livestock and wildlife. The objective of this study was to explore the potential of using UHF telemetry to identify the reproductive cycle phenotype in terms of intensity and duration of estrus. The study was conducted using Belmont Red (interbred Africander Brahman Hereford-Shorthorn) cattle grazing irrigated pasture on Belmont Research Station, northeastern Australia. The cow-bull associations from three groups of cows each with one bull were recorded over a 7-week breeding season and the stage of estrus was identified using ultrasonography. Telemetry data from bull and cows, collected over 4 8-day logger deployments, were log transformed and analyzed by ANOVA. Both the number and duration of bull-cow affiliations were significantly (P<0.001) greater in estrous cows compared to anestrus cows. These results support the development of the UHF technology as a hands-off and noninvasive means of gathering socio-sexual information on both wildlife and livestock for reproductive management.

Opportunities for telemetry techniques in studies on the nutritional ecology of free-ranging domesticated ruminants.

The principles of domestic herbivore nutrition are well understood and have been developed through detailed physiological studies, although methods to accurately measure field-based intake still challenge herbivore nutrition research. Nutritional ecology considers an animal's interaction with the environment based on its nutritional demands. Although there are a number of theoretical frameworks that can be used to explore nutritional ecology, optimal foraging provides a suitable starting point. Optimal foraging models have progressed from deterministic techniques to spatially explicit agent-based simulation methods. The development of optimal foraging modelling points towards opportunities for field-based research to explore behavioural preferences within studies that have an array of nutritional choices that vary both spatially and temporally. A number of techniques including weighing animals, weighing herbage, using markers (both natural and artificial) and sampling forage, using oesophageal-fistulated animals, have been used to determine intake in the field. These intake measurement techniques are generally most suited to studies that occur over a few days and with relatively small (often less than 10) groups of animals. Over the last 10 years, there have been a number of advances in automated behavioural monitoring technology (e.g. global positioning systems) to track animal movement. A number of recent studies have integrated detailed spatial assessments of vegetation using on-ground sampling and satellite remote sensing; these data have been linked to behavioural preferences of herbivores. Although the recent studies still do not address nutritional interactions over months or years, they do point to methods that could be used to address landscape scale nutritional interactions. Emerging telemetry techniques used to monitor herbivore behavioural preferences and also to determine detailed landscape vegetation mapping provide the opportunity for future herbivore nutritional ecology studies.

Spatial distribution patterns of sheep following manipulation of feeding motivation and food availability.

We hypothesised that (i) increased feeding motivation will cause sheep to move further apart as a result of individuals trying to find food and (ii) in conditions of high food availability, sheep will move less and show greater social attraction. The effects of both feeding motivation and food availability on spatial distribution was examined in eight groups of food-deprived (high feeding motivation) and satiated (low feeding motivation) sheep in good or poor food resource plots in a 2 × 2 design. Distance travelled was assessed using Global Positioning System collars, grazing time using scan sampling and social cohesion using proximity collars that record the number and duration of encounters within 4 m. Food-deprived sheep in the good-resource plots grazed the most, whereas satiated sheep in the poor-resource plots grazed the least (P = 0.004). Food deprivation had no significant effect on the number or duration of encounters and feeding motivation appeared to have little effect on spatial distribution. Contrary to expectation, sheep had more encounters (P = 0.04) of a longer total duration (P = 0.02) in poor-resource plots than in good-resource plots, indicating that sheep were showing more social cohesion if food was scarce. Our findings suggest that when food is scarce, animals may come together in an attempt to share information on food availability. However, when a highly preferred food is abundant and well dispersed, they may move apart in order to maximise the intake. It is concluded that the particular details of our experiment, namely the even distribution or absence of a highly preferred food, affected spatial distribution patterns as sheep tried to find this food and maximise the intake.

Ewe and lamb contact at lambing is influenced by both shelter type and birth number.

A significant number of lambs born each year in Australia die within 72 h of birth. Periods of high wind, combined with rain and low temperatures can lead to marked increases in the mortality level. Under these climatic conditions mortality levels may be reduced with the provision of shelter. This study used contact loggers to compare interactions between ewes with twin lambs across two shelter types (Hessian and shrubs), while also comparing ewes with single and twin lambs in a single shelter type (Hessian). The contact loggers record the time of the initial contact (within approximately 4 to 5 m) between collared animals and the duration of each contact. Contact levels between ewes immediately after lambing were only 10% of the initial levels (1 h/day). For single-born lambs, lambs averaged 11 h contact per day with their mother, while for twinborn lambs, each lamb averaged 9.25 h/day with its mother and 14.7 h/day with its sibling. The level of contact between ewes and each of their offspring in the Hessian was 24% lower (P < 0.05) for ewes with twin lambs than with singles. For ewes with twin lambs the level of contact was 17% lower (P < 0.05) in the Hessian shelter compared with shrub shelter. We conclude that shelter type and birth number can affect the level of contact between ewes and their offspring.

The effect of grazing management on livestock exposure to parasites via the faecal-oral route.

In grazing systems, heterogeneous distributions of forage resources and faeces result in localised accumulations of nutrients and parasites (both macroparasites and microparasites), creating trade-offs between the costs of exposure to infestation or infection and the benefits of nutrient intake. Each contact between livestock and faeces in the environment is a potential parasite/pathogen transmission event. Thus, herbivores must make foraging decisions in complex environments which will affect their intake of both nutrients and parasites. However, the pattern of forage and faecal resources in agricultural environments will also be affected by the grazing management system in place. The aim of this study was to investigate the effect of grazing management on the risk of infection/infestation to livestock. We used a spatially explicit individual based stochastic foraging model to simulate livestock contact (both grazing and investigative) with faeces in the environment. The model was parameterised to simulate cattle grazing under three types of grazing management: set stock (i.e. where sward growth and cattle intake are in equilibrium in a single field); a two pasture rotation grazing system with increasing number of rotations; and a rotational grazing system with two rotations and increasing subdivisions of the pasture. Overall the amount of cattle contact with faecal-contaminated patches was similar in both set stocking and rotational grazing scenarios, suggesting no difference in the risk of infection or infestation between the different systems. However, the timing and absolute amounts of peak contact varied greatly indicating that different grazing management systems expose livestock to risks of different types of parasites at different times of the grazing season. Intensive rotational systems with small pasture blocks (especially the first grazing period) maximised livestock contact with fresh faeces, and thus exposure to microparasites (e.g. bacterial pathogens). Livestock re-entering pasture blocks in rotational systems and set stocked livestock had the highest contact with old faeces and thus have a greater risk of macroparasite transmission (gastrointestinal nematodes). This study highlights how livestock management affects the highly dynamic interaction between livestock and distributions of parasites in the environment and thus the levels of livestock exposure to parasites and pathogens via the faecal-oral route.

Inter- and intra-specific exposure to parasites and pathogens via the faecal-oral route: a consequence of behaviour in a patchy environment.

Livestock herbivores are at risk of inter- and intra-specific exposure to parasites/pathogens via the faecal-oral route during grazing. Each contact between livestock and faeces in the environment is a potential parasite/pathogen transmission event. Cattle grazing contact with faeces varies in relation to the species depositing the faeces and the distribution of the faeces. We used a foraging model to simulate the grazing behaviour of beef cattle in two grazing systems to compare the relative inter-specific and intra-specific exposure risks to parasites/pathogens. Overall, there is a greater level of intra- vs. inter-specific risk via the faecal-oral route. However, under certain conditions, particularly for microparasite infections, e.g. paratuberculosis in rabbits and bovine tuberculosis in badgers, wildlife may pose a significant exposure risk to parasites/pathogens. These risks can be enhanced when cattle are first turned out onto pasture and in situations where intra-specific variations in wildlife behaviour result in more dispersed defecation patterns.

Estimation of maternal variance components considering cow-calf contacts under extensive pastoral systems.

Traditional methods of variance component estimation for traits under maternal influence consist of partitioning the variance into direct additive genetic, maternal additive genetic, permanent maternal environmental, and error variance components. This partitioning is based on the assumption that each calf is nurtured and fed exclusively by its own dam. However, under extensive pastoral systems, voluntary cross-suckling may occur and could be quantified by using contact loggers recording cow-calf affiliations. A simulation study was conducted to test several variance models for partitioning maternal variation by including information on cow-calf contacts. The results indicated that weighting maternal genetic and permanent maternal environmental effects by the relative time calves spent with particular cows, including their own mothers, is feasible and significantly increased the log-likelihood of the models. However, the interpretation of the variance components in terms of traditional direct and maternal heritability is no longer straightforward. The need for further research and implications for the industry are discussed.

A 14,000-year oxygen isotope record from diatom silica in two alpine lakes on Mt. Kenya.

Oxygen isotopes are sensitive tracers of climate change in tropical regions. Abrupt shifts of up to 18 per mil in the oxygen isotope ratio of diatom silica have been found in a 14,000-year record from two alpine lakes on Mt. Kenya. Interpretation of tropical-montane isotope records is controversial, especially concerning the relative roles of precipitation and temperature. Here, we argue that Holocene variations in delta(18)O are better explained by lake moisture balance than by temperature-induced fractionation. Episodes of heavy convective precipitation dated approximately 11,100 to 8600, 6700 to 5600, 2900 to 1900, and <1300 years before the present were linked to enhanced soil erosion, neoglacial ice advances, and forest expansion on Mt. Kenya.