Across two phylogeographic breaks: Quaternary evolutionary history of a mountain aspen (Populus rotundifolia) in the Hengduan Mountains.

Biogeographical barriers to gene flow are central to plant phylogeography. In East Asia, plant distribution is greatly influenced by two phylogeographic breaks, the Mekong-Salween Divide and Tanaka-Kaiyong Line, however, few studies have investigated how these barriers affect the genetic diversity of species that are distributed across both. Here we used 14 microsatellite loci and four chloroplast DNA fragments to examine genetic diversity and distribution patterns of 49 populations of Populus rotundifolia, a species that spans both the Mekong-Salween Divide and the Tanaka-Kaiyong Line in southwestern China. Demographic and migration hypotheses were tested using coalescent-based approaches. Limited historical gene flow was observed between the western and eastern groups of P. rotundifolia, but substantial flow occurred across both the Mekong-Salween Divide and Tanaka-Kaiyong Line, manifesting in clear admixture and high genetic diversity in the central group. Wind-borne pollen and seeds may have facilitated the dispersal of P. rotundifolia following prevalent northwest winds in the spring. We also found that the Hengduan Mountains, where multiple genetic barriers were detected, acted on the whole as a barrier between the western and eastern groups of P. rotundifolia. Ecological niche modeling suggested that P. rotundifolia has undergone range expansion since the last glacial maximum, and demographic reconstruction indicated an earlier population expansion around 600 Ka. The phylogeographic pattern of P. rotundifolia reflects the interplay of biological traits, wind patterns, barriers, niche differentiation, and Quaternary climate history. This study emphasizes the need for multiple lines of evidence in understanding the Quaternary evolution of plants in topographically complex areas.

A vaccine based on the yeast-expressed receptor-binding domain (RBD) elicits broad immune responses against SARS-CoV-2 variants.

Development of safe and efficient vaccines is still necessary to deal with the COVID-19 pandemic. Herein, we reported that yeast-expressed recombinant RBD proteins either from wild-type or Delta SARS-CoV-2 were able to elicit immune responses against SARS-CoV-2 and its variants. The wild-type RBD (wtRBD) protein was overexpressed in Pichia pastoris, and the purified protein was used as the antigen to immunize mice after formulating an aluminium hydroxide (Alum) adjuvant. Three immunization programs with different intervals were compared. It was found that the immunization with an interval of 28 days exhibited the strongest immune response to SARS-CoV-2 than the one with an interval of 14 or 42 days based on binding antibody and the neutralizing antibody (NAb) analyses. The antisera from the mice immunized with wtRBD were able to neutralize the Beta variant with a similar efficiency but the Delta variant with 2~2.5-fold decreased efficiency. However, more NAbs to the Delta variant were produced when the Delta RBD protein was used to immunize mice. Interestingly, the NAbs may cross react with the Omicron variant. To increase the production of NAbs, the adjuvant combination of Alum and CpG oligonucleotides was used. Compared with the Alum adjuvant alone, the NAbs elicited by the combined adjuvants exhibited an approximate 10-fold increase for the Delta and a more than 53-fold increase for the Omicron variant. This study suggested that yeast-derived Delta RBD is a scalable and an effective vaccine candidate for SARS-CoV-2 and its variants.

Appeal: the protection of ancient tree species around the world, taking qilian juniper (Juniperus przewalskii) as an example.

Juniperus przewalskii (the Qilian juniper) is a dominant species in the northeast region of the Qinghai-Tibet Plateau. As such, it is of great significance for maintaining the balance and long-term stability of the ecosystem in this biodiversity hotspot. In this paper, we review the literature related to J. przewalskii published in the China National Knowledge Infrastructure and Web of Science. Here, we summarize the main research achievements with regard to this species from ten aspects: tree morphology and phenology, population structure and life history, radial growth and climate response, tree-ring chronology-based history reconstruction, soil physical and chemical properties, chemical composition and activity, physiological ecology, biogeography, breeding and propagation techniques, and occurrence and control of diseases and pests. Considering the ecological importance and research value of J. przewalskii, as well as the shrinking population size, we discuss future research prospects and directions for the conservation of J. przewalskii from four aspects: global climate change, human disturbance, tree regeneration, and pest control. This work provides an important reference for conservation studies of alpine tree species in other biodiversity hotspots around the world.

Building a reference transcriptome for Juniperus squamata (Cupressaceae) based on single-molecule real-time sequencing.

OBJECTIVES: Cupressaceae is the second largest family of coniferous trees (Coniferopsida) with important economic and ecological values. However, like other conifers, the members of Cupressaceae have extremely large genome (> 8 gigabytes), which limited the researches of these taxa. A high-quality transcriptome is an important resource for gene discovery and annotation for non-model organisms. DATA DESCRIPTION: Juniperus squamata, a tetraploid species which is widely distributed in Asian mountains, represents the largest genus, Juniperus, in Cupressaceae. Single-molecule real-time sequencing was used to obtain full-length transcriptome of Juniperus squamata. The full-length transcriptome was corrected with Illumina RNA-seq data from the same individual. A total of 47,860 non-redundant full-length transcripts, N50 of which was 2839, were obtained. A total of 57,393 simple sequence repeats were identified and 268,854 open reading frames were predicted for Juniperus squamata. A BLAST alignment against non-redundant protein database was conducted and 10,818 sequences were annotated in Gene Ontology database. InterPro analysis shows that 30,403 sequences have been functionally characterized against its member database. This data presents the first comprehensive transcriptome characterization of Juniperus species, and provides an important reference for researches on the genomics and evolutionary history of Cupressaceae plants and conifers in the future.

Global potential distribution prediction of Xanthium italicum based on Maxent model.

Alien invasive plants pose a threat to global biodiversity and the cost of control continues to rise. Early detection and prediction of potential risk areas are essential to minimize ecological and socio-economic costs. In this study, the Maxent model was used to predict current and future climatic conditions to estimate the potential global distribution of the invasive plant Xanthium italicum. The model consists of 366 occurrence records (10 repeats, 75% for calibration and 25% for verification) and 10 climate prediction variables. According to the model forecast, the distribution of X. italicum was expected to shrink in future climate scenarios with human intervention, which may be mainly caused by the rise in global average annual temperature. The ROC curve showed that the AUC values of the training set and the test set are 0.965 and 0.906, respectively, indicating that the prediction result of this model was excellent. The contribution rates of annual mean temperature, monthly mean diurnal temperature range, standard deviation of temperature seasonal change and annual average precipitation to the geographical distribution of X. italicum were 65.3%, 11.2%, 9.0%, and 7.7%, respectively, and the total contribution rate was 93.2%. These four variables are the dominant environmental factors affecting the potential distribution of X. italicum, and the influence of temperature is greater than that of precipitation. Through our study on the potential distribution prediction of X. italicum under the future climatic conditions, it has contribution for all countries to strengthen its monitoring, prevention and control, including early warning.

Genetic diversity and genetic differentiation of invasive weed Xanthium italicum in China.

Xanthium italicum is an aggressive weed found worldwide. Despite several ecological, morphological, and physiological research on its invasion mechanism, the mechanism of its successful invasion has not been revealed from the viewpoint of population genetics. Thus, we aimed to evaluate the genetic variation within and among populations of the alien invasive weed X. italicum in China, and to provide a theoretical basis for its invasion mechanism. For that, we employed inter-simple sequence repeat (ISSR) markers to explore the genetic diversity and genetic differentiation of 185 individuals sampled from 10 populations. Eight selected primers yielded a total of 76 bright and discernible bands. X. italicum showed an intermediate genetic diversity at the population level (percentage of polymorphic loci (PPL) = 60.26%, Nei's genetic diversity (H) = 0.2098, Shannon's information index (I) = 0.3129). However, the genetic diversity at the species level was significantly high (PPL = 100%; H = 0.3673; I = 0.5425). The coefficient of gene differentiation (GST, 41.4%) and analysis of molecular variance showed that genetic differentiation mainly occurred within populations. The estimated gene flow (Nm, 0.7085) and Mantel test indicated that genetic differentiation in the populations may primarily come from genetic drift and anthropogenic activities. Our results revealed the high genetic diversity of X. italicum, which may help explain its invasion success in China. This knowledge may contribute to the efforts for decreasing and eventually stopping X. italicum invasion in China.

Xanthium italicum est une plante envahissante trouvée dans le monde entier. En dépit de quelques recherches écologiques, morphologiques et physiologiques à propos de son mécanisme d'invasion, le mécanisme de son invasion réussie n'a pas encore été révélé du point de vue de la génétique démographique. Donc, nous avons visé à évaluer la variation génétique au sein de et parmi les populations de plante exotique envahissante X. italicum en Chine, et à offrir une base théorique à son mécanisme d'invasion. À cet effet, nous avons employé des marqueurs des répétitions de séquences inter-simples (ISSR) afin d'explorer la diversité génétique et la différenciation génétique de 185 individus échantillonnés à partir de 10 populations. Huit amorces sélectionnées ont donné un total de 76 bandes brillantes et perceptibles. X. italicum a montré une diversité génétique intermédiaire au niveau de la population (pourcentage de loci polymorphe (PPL) = 60.26%, la diversité génétique de Nei (H) = 0.2098, l'indice d'information de Shannon (I) = 0.3129). Toutefois, la diversité génétique était considérablement élevée au niveau des espèces (PPL = 100% ; H = 0.3673 ; I = 0.5425). Tant le coefficient de différenciation génétique (GST, 41.4%) que l'analyse de la variance moléculaire ont reflété que la différenciation génétique se produisait principalement au sein des populations. En fonction du flux génétique estimé (Nm, 0.7085) et du test Mantel, la différenciation génétique au sein des populations pourrait provenir principalement de la dérive génétique et des activités anthropiques. Nos résultats ont révélé la haute diversité génétique de X. italicum, cela peut aider à expliquer son succès d'invasion en Chine. Ces connaissances pourraient contribuer à la réduction et à l'arrêt éventuel de l'invasion de X. italicum en Chine.

Two Phytotoxins Isolated from the Pathogenic Fungus of the Invasive Weed Xanthium italicum.

Alternariol and altenuisol were isolated as the major phytotoxins produced by an Alternaria sp. pathogenic fungus of the invasive weed Xanthium italicum. Altenuisol exhibited stronger phytotoxic effect compared with alternariol. At 10 µg/mL, alternariol and altenuisol promoted root growth of the monocot plant Pennisetum alopecuroides by 11.1 % and 75.2 %, respectively, however, inhibitory activity was triggered by the increase of concentration, with root elongation being suppressed by 35.5 % and 52.0 % with alternariol and altenuisol at 1000 µg/mL, respectively. Alternariol slightly inhibited root length of the dicot plant Medicago sativa at 10-1000 µg/mL, whereas altenuisol stimulated root growth by 51.0 % at 10 µg/mL and inhibited root length by 43.4 % at 200 µg/mL. Alternariol and altenuisol did not exert strong regulatory activity on another dicot plant, Amaranthus retroflexus, when tested concentration was low, however, when the concentration reached 1000 µg/mL, they reduced root length by 68.1 % and 51.0 %, respectively. Alternariol and altenuisol exerted similar effect on shoot growth of three tested plants but to a lesser extent. It is noteworthy to mention that this is the first report on the phytotoxicity of altenuisol.