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1.
Comput Mech ; 73(1): 49-65, 2024 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-38741577

RESUMO

Data-driven methods have changed the way we understand and model materials. However, while providing unmatched flexibility, these methods have limitations such as reduced capacity to extrapolate, overfitting, and violation of physics constraints. Recently, frameworks that automatically satisfy these requirements have been proposed. Here we review, extend, and compare three promising data-driven methods: Constitutive Artificial Neural Networks (CANN), Input Convex Neural Networks (ICNN), and Neural Ordinary Differential Equations (NODE). Our formulation expands the strain energy potentials in terms of sums of convex non-decreasing functions of invariants and linear combinations of these. The expansion of the energy is shared across all three methods and guarantees the automatic satisfaction of objectivity, material symmetries, and polyconvexity, essential within the context of hyperelasticity. To benchmark the methods, we train them against rubber and skin stress-strain data. All three approaches capture the data almost perfectly, without overfitting, and have some capacity to extrapolate. This is in contrast to unconstrained neural networks which fail to make physically meaningful predictions outside the training range. Interestingly, the methods find different energy functions even though the prediction on the stress data is nearly identical. The most notable differences are observed in the second derivatives, which could impact performance of numerical solvers. On the rich data used in these benchmarks, the models show the anticipated trade-off between number of parameters and accuracy. Overall, CANN, ICNN and NODE retain the flexibility and accuracy of other data-driven methods without compromising on the physics. These methods are ideal options to model arbitrary hyperelastic material behavior.

2.
Res Sq ; 2024 Apr 18.
Artigo em Inglês | MEDLINE | ID: mdl-38699367

RESUMO

Since their invention, tissue expanders, which are designed to trigger additional skin growth, have revolutionised many reconstructive surgeries. Currently, however, the sole quantitative method to assess skin growth requires skin excision. Thus, in the context of patient outcomes, a machine learning method which uses non-invasive measurements to predict in vivo skin growth and other skin properties, holds significant value. In this study, the finite element method was used to simulate a typical skin expansion protocol and to perform various simulated wave propagation experiments during the first few days of expansion on 1,000 individual virtual subjects. An artificial neural network trained on this dataset was shown to be capable of predicting the future skin growth at 7 days (avg. R2 = 0.9353) as well as the subject-specific shear modulus (R2 = 0.9801), growth rate (R2 = 0.8649), and natural pre-stretch (R2 = 0.9783) with a very high degree of accuracy. The method presented here has implications for the real-time prediction of patient-specific skin expansion outcomes and could facilitate the development of patient-specific protocols.

3.
Soft Matter ; 20(21): 4197-4207, 2024 May 29.
Artigo em Inglês | MEDLINE | ID: mdl-38477130

RESUMO

Subcutaneous tissue mechanical response is governed by the geometry and mechanical properties at the microscale and drives physiological and clinical processes such as drug delivery. Even though adipocyte packing is known to change with age, disease, and from one individual to another, the link between the geometry of the packing and the overall mechanical response of adipose tissue remains poorly understood. Here we create 1200 periodic representative volume elements (RVEs) that sample the possible space of Laguerre packings describing adipose tissue. RVE mechanics are modeled under tri-axial loading. Equilibrium configuration of RVEs is solved by minimizing an energetic potential that includes volume change contributions from adipocyte expansion, and area change contributions from collagen foam stretching. The resulting mechanical response across all RVE samples is interpolated with the aid of a Gaussian process (GP), revealing how the microscale geometry dictates the overall RVE mechanics. For example, increase in adipocyte size and increase in sphericity lead to adipose tissue softening. We showcase the use of the homogenized model in finite element simulations of drug injection by implementing a Blatz-Ko model, informed by the GP, as a custom material in the popular open-source package FEBio. These simulations show how microscale geometry can lead to vastly different injection dynamics even if the constituent parameters are held constant, highlighting the importance of characterizing individual's adipose tissue structure in the development of personalized therapies.


Assuntos
Adipócitos , Tela Subcutânea , Adipócitos/citologia , Modelos Biológicos , Humanos , Distribuição Normal , Fenômenos Biomecânicos , Análise de Elementos Finitos
4.
J Mech Behav Biomed Mater ; 147: 106143, 2023 11.
Artigo em Inglês | MEDLINE | ID: mdl-37778167

RESUMO

Skin is subjected to extreme mechanical loading during needle insertion and drug delivery to the subcutaneous space. There is a rich literature on the characterization of porcine skin biomechanics as the preeminent animal model for human skin, but the emphasis has been on the elastic response and specific anatomical locations such as the dorsal and the ventral regions. During drug delivery, however, energy dissipation in the form of damage, softening, and fracture, is expected. Similarly, reports on experimental characterization are complemented by modeling efforts, but with similar gaps in microstructure-driven modeling of dissipative mechanisms. Here we contribute to the bridging of these gaps by testing porcine skin from belly and breast regions, in two different orientation with respect to anatomical axes, and to progressively higher stretches in order to show damage accumulation and stiffness degradation. We complement the mechanical test with imaging of the collagen structure and a micro-mechanics modeling framework. We found that skin from the belly is stiffer with respect to the breast region when comparing the calf stiffness of the J-shaped stress-stretch response observed in most collagenous tissues. No significant direction dependent properties were found in either anatomical location. Both locations showed energy dissipation due to damage, evident though a softening of the stress-stretch response. The microstructure model was able to capture the elastic and damage progression with a small set of parameters, some of which were determined directly from imaging. We anticipate that data and model fits can help in predictive simulations for device design in situations where skin is subject to supra-physiological deformation such as in subcutaneous drug delivery.


Assuntos
Colágeno , Pele , Suínos , Humanos , Animais , Estresse Mecânico , Pele/metabolismo , Colágeno/química , Fenômenos Biomecânicos , Derme
5.
Comput Biol Med ; 165: 107342, 2023 10.
Artigo em Inglês | MEDLINE | ID: mdl-37647782

RESUMO

Breast cancer is the most commonly diagnosed cancer type worldwide. Given high survivorship, increased focus has been placed on long-term treatment outcomes and patient quality of life. While breast-conserving surgery (BCS) is the preferred treatment strategy for early-stage breast cancer, anticipated healing and breast deformation (cosmetic) outcomes weigh heavily on surgeon and patient selection between BCS and more aggressive mastectomy procedures. Unfortunately, surgical outcomes following BCS are difficult to predict, owing to the complexity of the tissue repair process and significant patient-to-patient variability. To overcome this challenge, we developed a predictive computational mechanobiological model that simulates breast healing and deformation following BCS. The coupled biochemical-biomechanical model incorporates multi-scale cell and tissue mechanics, including collagen deposition and remodeling, collagen-dependent cell migration and contractility, and tissue plastic deformation. Available human clinical data evaluating cavity contraction and histopathological data from an experimental porcine lumpectomy study were used for model calibration. The computational model was successfully fit to data by optimizing biochemical and mechanobiological parameters through Gaussian process surrogates. The calibrated model was then applied to define key mechanobiological parameters and relationships influencing healing and breast deformation outcomes. Variability in patient characteristics including cavity-to-breast volume percentage and breast composition were further evaluated to determine effects on cavity contraction and breast cosmetic outcomes, with simulation outcomes aligning well with previously reported human studies. The proposed model has the potential to assist surgeons and their patients in developing and discussing individualized treatment plans that lead to more satisfying post-surgical outcomes and improved quality of life.


Assuntos
Neoplasias da Mama , Mastectomia Segmentar , Humanos , Animais , Suínos , Feminino , Mastectomia Segmentar/métodos , Mastectomia/métodos , Neoplasias da Mama/cirurgia , Neoplasias da Mama/patologia , Qualidade de Vida , Colágeno
6.
Artigo em Inglês | MEDLINE | ID: mdl-37426992

RESUMO

We develop a fully data-driven model of anisotropic finite viscoelasticity using neural ordinary differential equations as building blocks. We replace the Helmholtz free energy function and the dissipation potential with data-driven functions that a priori satisfy physics-based constraints such as objectivity and the second law of thermodynamics. Our approach enables modeling viscoelastic behavior of materials under arbitrary loads in three-dimensions even with large deformations and large deviations from the thermodynamic equilibrium. The data-driven nature of the governing potentials endows the model with much needed flexibility in modeling the viscoelastic behavior of a wide class of materials. We train the model using stress-strain data from biological and synthetic materials including humain brain tissue, blood clots, natural rubber and human myocardium and show that the data-driven method outperforms traditional, closed-form models of viscoelasticity.

7.
Ann Biomed Eng ; 51(9): 2056-2069, 2023 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-37233856

RESUMO

Subcutaneous injection, which is a preferred delivery method for many drugs, causes deformation, damage, and fracture of the subcutaneous tissue. Yet, experimental data and constitutive modeling of these dissipation mechanisms in subcutaneous tissue remain limited. Here we show that subcutaneous tissue from the belly and breast anatomical regions in the swine show nonlinear stress-strain response with the characteristic J-shaped behavior of collagenous tissue. Additionally, subcutaneous tissue experiences damage, defined as a decrease in the strain energy capacity, as a function of the previously experienced maximum deformation. The elastic and damage response of the tissue are accurately described by a microstructure-driven constitutive model that relies on the convolution of a neo-Hookean material of individual fibers with a fiber orientation distribution and a fiber recruitment distribution. The model fit revealed that subcutaneous tissue can be treated as initially isotropic, and that changes in the fiber recruitment distribution with loading are enough to explain the dissipation of energy due to damage. When tested until failure, subcutaneous tissue that has undergone damage fails at the same peak stress as virgin samples, but at a much larger stretch, overall increasing the tissue toughness. Together with a finite element implementation, these data and constitutive model may enable improved drug delivery strategies and other applications for which subcutaneous tissue biomechanics are relevant.


Assuntos
Modelos Biológicos , Tela Subcutânea , Suínos , Animais , Injeções Subcutâneas , Fenômenos Biomecânicos , Análise de Elementos Finitos , Estresse Mecânico
8.
PLoS Comput Biol ; 19(3): e1010902, 2023 03.
Artigo em Inglês | MEDLINE | ID: mdl-36893170

RESUMO

Injuries to the skin heal through coordinated action of fibroblast-mediated extracellular matrix (ECM) deposition, ECM remodeling, and wound contraction. Defects involving the dermis result in fibrotic scars featuring increased stiffness and altered collagen content and organization. Although computational models are crucial to unravel the underlying biochemical and biophysical mechanisms, simulations of the evolving wound biomechanics are seldom benchmarked against measurements. Here, we leverage recent quantifications of local tissue stiffness in murine wounds to refine a previously-proposed systems-mechanobiological finite-element model. Fibroblasts are considered as the main cell type involved in ECM remodeling and wound contraction. Tissue rebuilding is coordinated by the release and diffusion of a cytokine wave, e.g. TGF-ß, itself developed in response to an earlier inflammatory signal triggered by platelet aggregation. We calibrate a model of the evolving wound biomechanics through a custom-developed hierarchical Bayesian inverse analysis procedure. Further calibration is based on published biochemical and morphological murine wound healing data over a 21-day healing period. The calibrated model recapitulates the temporal evolution of: inflammatory signal, fibroblast infiltration, collagen buildup, and wound contraction. Moreover, it enables in silico hypothesis testing, which we explore by: (i) quantifying the alteration of wound contraction profiles corresponding to the measured variability in local wound stiffness; (ii) proposing alternative constitutive links connecting the dynamics of the biochemical fields to the evolving mechanical properties; (iii) discussing the plausibility of a stretch- vs. stiffness-mediated mechanobiological coupling. Ultimately, our model challenges the current understanding of wound biomechanics and mechanobiology, beside offering a versatile tool to explore and eventually control scar fibrosis after injury.


Assuntos
Pele , Cicatrização , Camundongos , Animais , Teorema de Bayes , Cicatrização/fisiologia , Cicatriz/patologia , Colágeno/metabolismo , Fibroblastos/metabolismo , Fibrose
9.
J Mech Behav Biomed Mater ; 140: 105695, 2023 04.
Artigo em Inglês | MEDLINE | ID: mdl-36739826

RESUMO

Autoinjectors are becoming a primary drug delivery option to the subcutaneous space. These devices need to work robustly and autonomously to maximize drug bio-availability. However, current designs ignore the coupling between autoinjector dynamics and tissue biomechanics. Here we present a Bayesian framework for optimization of autoinjector devices that can account for the coupled autoinjector-tissue biomechanics and uncertainty in tissue mechanical behavior. The framework relies on replacing the high fidelity model of tissue insertion with a Gaussian process (GP). The GP model is accurate yet computationally affordable, enabling a thorough sensitivity analysis that identified tissue properties, which are not part of the autoinjector design space, as important variables for the injection process. Higher fracture toughness decreases the crack depth, while tissue shear modulus has the opposite effect. The sensitivity analysis also shows that drug viscosity and spring force, which are part of the design space, affect the location and timing of drug delivery. Low viscosity could lead to premature delivery, but can be prevented with smaller spring forces, while higher viscosity could prevent premature delivery while demanding larger spring forces and increasing the time of injection. Increasing the spring force guarantees penetration to the desired depth, but it can result in undesirably high accelerations. The Bayesian optimization framework tackles the challenge of designing devices with performance metrics coupled to uncertain tissue properties. This work is important for the design of other medical devices for which optimization in the presence of material behavior uncertainty is needed.


Assuntos
Física , Teorema de Bayes , Injeções
11.
J Biomech Eng ; 144(12)2022 12 01.
Artigo em Inglês | MEDLINE | ID: mdl-35986450

RESUMO

Growth of skin in response to stretch is the basis for tissue expansion (TE), a procedure to gain new skin area for reconstruction of large defects. Unfortunately, complications and suboptimal outcomes persist because TE is planned and executed based on physician's experience and trial and error instead of predictive quantitative tools. Recently, we calibrated computational models of TE to a porcine animal model of tissue expansion, showing that skin growth is proportional to stretch with a characteristic time constant. Here, we use our calibrated model to predict skin growth in cases of pediatric reconstruction. Available from the clinical setting are the expander shapes and inflation protocols. We create low fidelity semi-analytical models and finite element models for each of the clinical cases. To account for uncertainty in the response expected from translating the models from the animal experiments to the pediatric population, we create multifidelity Gaussian process surrogates to propagate uncertainty in the mechanical properties and the biological response. Predictions with uncertainty for the clinical setting are essential to bridge our knowledge from the large animal experiments to guide and improve the treatment of pediatric patients. Future calibration of the model with patient-specific data-such as estimation of mechanical properties and area growth in the operating room-will change the standard for planning and execution of TE protocols.


Assuntos
Dispositivos para Expansão de Tecidos , Expansão de Tecido , Animais , Humanos , Pele , Suínos , Expansão de Tecido/métodos
12.
J Biomech Eng ; 144(12)2022 12 01.
Artigo em Inglês | MEDLINE | ID: mdl-35788269

RESUMO

One of the intrinsic features of skin and other biological tissues is the high variation in the mechanical properties across individuals and different demographics. Mechanical characterization of skin is still a challenge because the need for subject-specific in vivo parameters prevents us from utilizing traditional methods, e.g., uniaxial tensile test. Suction devices have been suggested as the best candidate to acquire mechanical properties of skin noninvasively, but capturing anisotropic properties using a circular probe opening-which is the conventional suction device-is not possible. On the other hand, noncircular probe openings can drive different deformations with respect to fiber orientation and therefore could be used to characterize the anisotropic mechanics of skin noninvasively. We propose the use of elliptical probe openings and a methodology to solve the inverse problem of finding mechanical properties from suction measurements. The proposed probe is tested virtually by solving the forward problem of skin deformation by a finite element (FE) model. The forward problem is a function of the material parameters. In order to solve the inverse problem of determining skin properties from suction data, we use a Bayesian framework. The FE model is an expensive forward function, and is thus substituted with a Gaussian process metamodel to enable the Bayesian inference problem.


Assuntos
Modelos Biológicos , Teorema de Bayes , Elasticidade , Análise de Elementos Finitos , Humanos , Estresse Mecânico , Sucção
13.
J Biomech ; 134: 110995, 2022 03.
Artigo em Inglês | MEDLINE | ID: mdl-35220056

RESUMO

Autoinjector devices are rapidly becoming the preferred method of drug delivery for a wide array of pharmaceuticals such as monoclonal antibodies. Yet, our understanding of injection biomechanics is limited, but is crucially important to create autoinjectors that lead to the least amount of pain, penetrate the skin to a desired depth, produce small lesions that minimize back flow of drug, and operate robustly even given the variability in the skin mechanics among individuals. We propose a finite element model of needle insertion coupled to the dynamic model of an autoinjector. The finite element model is embedded with a cohesive zone plane to capture crack initiation and propagation within an energy-based fracture mechanics framework. The cohesive zone model is supported by experimental observations of a mode I crack during the needle insertion into the soft tissue. Model calibration against force curves from needle insertion experiments leads to estimated material and fracture properties that match values reported in independent experiments from the literature. With the calibrated model we explore the effect of change in the material properties and device parameters on the insertion dynamics. One of the most interesting findings is that pre-compression of skin from the autoinjector base plate can regulate the stress field near the skin surface and add strain energy that is available for crack formation.


Assuntos
Agulhas , Pele , Fenômenos Biomecânicos , Biofísica , Humanos , Injeções
14.
Biophys J ; 121(4): 525-539, 2022 02 15.
Artigo em Inglês | MEDLINE | ID: mdl-35074393

RESUMO

The mechanical behavior of tissues at the macroscale is tightly coupled to cellular activity at the microscale. Dermal wound healing is a prominent example of a complex system in which multiscale mechanics regulate restoration of tissue form and function. In cutaneous wound healing, a fibrin matrix is populated by fibroblasts migrating in from a surrounding tissue made mostly out of collagen. Fibroblasts both respond to mechanical cues, such as fiber alignment and stiffness, as well as exert active stresses needed for wound closure. Here, we develop a multiscale model with a two-way coupling between a microscale cell adhesion model and a macroscale tissue mechanics model. Starting from the well-known model of adhesion kinetics proposed by Bell, we extend the formulation to account for nonlinear mechanics of fibrin and collagen and show how this nonlinear response naturally captures stretch-driven mechanosensing. We then embed the new nonlinear adhesion model into a custom finite element implementation of tissue mechanical equilibrium. Strains and stresses at the tissue level are coupled with the solution of the microscale adhesion model at each integration point of the finite element mesh. In addition, solution of the adhesion model is coupled with the active contractile stress of the cell population. The multiscale model successfully captures the mechanical response of biopolymer fibers and gels, contractile stresses generated by fibroblasts, and stress-strain contours observed during wound healing. We anticipate that this framework will not only increase our understanding of how mechanical cues guide cellular behavior in cutaneous wound healing, but will also be helpful in the study of mechanobiology, growth, and remodeling in other tissues.


Assuntos
Colágeno , Fibrina , Biofísica , Análise de Elementos Finitos , Cinética , Modelos Biológicos , Estresse Mecânico
15.
Acta Biomater ; 140: 421-433, 2022 03 01.
Artigo em Inglês | MEDLINE | ID: mdl-34856415

RESUMO

Understanding the response of skin to superphysiological temperatures is critical to the diagnosis and prognosis of thermal injuries, and to the development of temperature-based medical therapeutics. Unfortunately, this understanding has been hindered by our incomplete knowledge about the nonlinear coupling between skin temperature and its mechanics. In Part I of this study we experimentally demonstrated a complex interdependence of time, temperature, direction, and load in skin's response to superphysiological temperatures. In Part II of our study, we test two different models of skin's thermo-mechanics to explain our observations. In both models we assume that skin's response to superphysiological temperatures is governed by the denaturation of its highly collageneous microstructure. Thus, we capture skin's native mechanics via a microstructurally-motivated strain energy function which includes probability distributions for collagen fiber orientation and waviness. In the first model, we capture skin's response to superphysiological temperatures as a transition between two states that link the kinetics of collagen fiber denaturation to fiber coiling and to the transformation of each fiber's constitutive behavior from purely elastic to viscoelastic. In the second model, we capture skin's response to superphysiological temperatures instead via three states in which a sequence of two reactions link the kinetics of collagen fiber denaturation to fiber coiling, followed by a state of fiber damage. Given the success of both models in qualitatively and quantitatively capturing our observations, we expect that our work will provide guidance for future experiments that could probe each model's assumptions toward a better understanding of skin's coupled thermo-mechanics and that our work will be used to guide the engineering design of heat treatment therapies. STATEMENT OF SIGNIFICANCE: Quantifying and modeling skin thermo-mechanics is critical to our understanding of skin physiology, pathophysiology, as well as heat-based treatments. This work addresses a lack of theoretical and computational models of the coupled thermo-mechanics of skin. Our model accounts for skin microstructure through modeling the probability of fiber orientation and fiber stress-free states. Denaturing induces changes in the stress-free configuration of collagen, as well as changes in fiber stiffness and viscoelastic properties. We propose two competing models that fit all of our experimental observations. These models will enable future developments of thermal-therapeutics, prevention and management of skin thermal injuries, and set a foundation for improved mechanistic models of skin thermo-mechanics.


Assuntos
Fenômenos Fisiológicos da Pele , Pele , Fenômenos Biomecânicos , Colágeno/química , Modelos Biológicos , Estresse Mecânico
16.
Eng Comput ; 38(5): 3909-3924, 2022 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-38046797

RESUMO

We propose a PDE-constrained shape registration algorithm that captures the deformation and growth of biological tissue from imaging data. Shape registration is the process of evaluating optimum alignment between pairs of geometries through a spatial transformation function. We start from our previously reported work, which uses 3D tensor product B-spline basis functions to interpolate 3D space. Here, the movement of the B-spline control points, composed with an implicit function describing the shape of the tissue, yields the total deformation gradient field. The deformation gradient is then split into growth and elastic contributions. The growth tensor captures addition of mass, i.e. growth, and evolves according to a constitutive equation which is usually a function of the elastic deformation. Stress is generated in the material due to the elastic component of the deformation alone. The result of the registration is obtained by minimizing a total energy functional which includes: a distance measure reflecting similarity between the shapes, and the total elastic energy accounting for the growth of the tissue. We apply the proposed shape registration framework to study zebrafish embryo epiboly process and tissue expansion during skin reconstruction surgery. We anticipate that our PDE-constrained shape registration method will improve our understanding of biological and medical problems in which tissues undergo extreme deformations over time.

17.
Acta Biomater ; 140: 412-420, 2022 03 01.
Artigo em Inglês | MEDLINE | ID: mdl-34560301

RESUMO

The mechanics of collagenous soft tissues, such as skin, are sensitive to heat. Thus, quantifying and modeling thermo-mechanical coupling of skin is critical to our understanding of skin's physiology, pathophysiology, and its treatment. However, key gaps persist in our knowledge about skin's coupled thermo-mechanics. Among them, we haven't quantified the role of skin's microstructural organization in its response to superphysiological loading. To fill this gap, we conducted a comprehensive set of experiments in which we combined biaxial mechanical testing with histology and two-photon imaging under liquid heat treatment at temperatures ranging from 37∘C to 95∘C lasting between 2 seconds and 5 minutes. Among other observations, we found that unconstrained skin, when exposed to high temperatures, shrinks anisotropically with the principal direction of shrinkage being aligned with collagen's principal orientation. Additionally, we found that when skin is isometrically constrained, it produces significant forces during denaturation that are also anisotropic. Finally, we found that denaturation significantly alters the mechanical behavior of skin. For short exposure times, this alteration is reflected in a reduction of stiffness at high strains. At long exposure times, the tissue softened to a point where it became untestable. We supplemented our findings with confirmation of collagen denaturation in skin via loss of birefringence and second harmonic generation. Finally, we captured all time-, temperature-, and direction-dependent experimental findings in a hypothetical model. Thus, this work fills a fundamental gap in our current understanding of skin thermo-mechanics and will support future developments in thermal injury prevention, thermal injury management, and thermal therapeutics of skin. STATEMENT OF SIGNIFICANCE: Our work experimentally explores how skin reacts to being heated. That is, it measures how much skin shrinks, what forces it produces, and how its mechanical properties change; all as a function of temperature, but also of direction and time. Additionally, our work connects these measurements to changes in skin's microscopic make-up. This knowledge is important to our understanding of skin's function and dysfunction, especially during burn injuries or heat-dependent treatments.


Assuntos
Colágeno , Pele , Anisotropia , Colágeno/química , Fótons , Estresse Mecânico
18.
Biophys Rev (Melville) ; 3(3): 031303, 2022 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-38505274

RESUMO

Tissues grow and remodel in response to mechanical cues, extracellular and intracellular signals experienced through various biological events, from the developing embryo to disease and aging. The macroscale response of soft tissues is typically nonlinear, viscoelastic anisotropic, and often emerges from the hierarchical structure of tissues, primarily their biopolymer fiber networks at the microscale. The adaptation to mechanical cues is likewise a multiscale phenomenon. Cell mechanobiology, the ability of cells to transform mechanical inputs into chemical signaling inside the cell, and subsequent regulation of cellular behavior through intra- and inter-cellular signaling networks, is the key coupling at the microscale between the mechanical cues and the mechanical adaptation seen macroscopically. To fully understand mechanics of tissues in growth and remodeling as observed at the tissue level, multiscale models of tissue mechanobiology are essential. In this review, we summarize the state-of-the art modeling tools of soft tissues at both scales, the tissue level response, and the cell scale mechanobiology models. To help the interested reader become more familiar with these modeling frameworks, we also show representative examples. Our aim here is to bring together scientists from different disciplines and enable the future leap in multiscale modeling of tissue mechanobiology.

19.
Adv Funct Mater ; 31(1)2021 Jan 04.
Artigo em Inglês | MEDLINE | ID: mdl-34764824

RESUMO

Accurately replicating and analyzing cellular responses to mechanical cues is vital for exploring metastatic disease progression. However, many of the existing in vitro platforms for applying mechanical stimulation seed cells on synthetic substrates. To better recapitulate physiological conditions, a novel actuating platform is developed with the ability to apply tensile strain on cells at various amplitudes and frequencies in a high-throughput multi-well culture plate using a physiologically-relevant substrate. Suspending fibrillar fibronectin across the body of the magnetic actuator provides a matrix representative of early metastasis for 3D cell culture that is not reliant on a synthetic substrate. This platform enables the culturing and analysis of various cell types in an environment that mimics the dynamic stretching of lung tissue during normal respiration. Metabolic activity, YAP activation, and morphology of breast cancer cells are analyzed within one week of cyclic stretching or static culture. Further, matrix degradation is significantly reduced in breast cancer cell lines with metastatic potential after actuation. These new findings demonstrate a clear suppressive cellular response due to cyclic stretching that has implications for a mechanical role in the dormancy and reactivation of disseminated breast cancer cells to macrometastases.

20.
Arch Comput Methods Eng ; 28(3): 1017-1037, 2021 May.
Artigo em Inglês | MEDLINE | ID: mdl-34093005

RESUMO

Machine learning is increasingly recognized as a promising technology in the biological, biomedical, and behavioral sciences. There can be no argument that this technique is incredibly successful in image recognition with immediate applications in diagnostics including electrophysiology, radiology, or pathology, where we have access to massive amounts of annotated data. However, machine learning often performs poorly in prognosis, especially when dealing with sparse data. This is a field where classical physics-based simulation seems to remain irreplaceable. In this review, we identify areas in the biomedical sciences where machine learning and multiscale modeling can mutually benefit from one another: Machine learning can integrate physics-based knowledge in the form of governing equations, boundary conditions, or constraints to manage ill-posted problems and robustly handle sparse and noisy data; multiscale modeling can integrate machine learning to create surrogate models, identify system dynamics and parameters, analyze sensitivities, and quantify uncertainty to bridge the scales and understand the emergence of function. With a view towards applications in the life sciences, we discuss the state of the art of combining machine learning and multiscale modeling, identify applications and opportunities, raise open questions, and address potential challenges and limitations. We anticipate that it will stimulate discussion within the community of computational mechanics and reach out to other disciplines including mathematics, statistics, computer science, artificial intelligence, biomedicine, systems biology, and precision medicine to join forces towards creating robust and efficient models for biological systems.

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