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1.
J Chem Phys ; 160(16)2024 Apr 28.
Artigo em Inglês | MEDLINE | ID: mdl-38686818

RESUMO

Quantum-chemical subsystem and embedding methods require complex workflows that may involve multiple quantum-chemical program packages. Moreover, such workflows require the exchange of voluminous data that go beyond simple quantities, such as molecular structures and energies. Here, we describe our approach for addressing this interoperability challenge by exchanging electron densities and embedding potentials as grid-based data. We describe the approach that we have implemented to this end in a dedicated code, PyEmbed, currently part of a Python scripting framework. We discuss how it has facilitated the development of quantum-chemical subsystem and embedding methods and highlight several applications that have been enabled by PyEmbed, including wave-function theory (WFT) in density-functional theory (DFT) embedding schemes mixing non-relativistic and relativistic electronic structure methods, real-time time-dependent DFT-in-DFT approaches, the density-based many-body expansion, and workflows including real-space data analysis and visualization. Our approach demonstrates, in particular, the merits of exchanging (complex) grid-based data and, in general, the potential of modular software development in quantum chemistry, which hinges upon libraries that facilitate interoperability.

2.
Chemistry ; 30(15): e202304068, 2024 Mar 12.
Artigo em Inglês | MEDLINE | ID: mdl-38240195

RESUMO

This study explores the distinctive behavior of protactinium (Z=91) within the actinide series. In contrast to neighboring elements like uranium or plutonium, protactinium in the pentavalent state diverges by not forming the typical dioxo protactinyl moiety PaO2 + in aqueous phase. Instead, it manifests as a monooxo PaO3+ cation or a Pa5+ . Employing first-principle calculations with implicit and explicit solvation, we investigate two stoichiometrically equivalent neutral complexes: PaO(OH)2 (X)(H2 O) and Pa(OH)4 (X), where X represents various monodentate and bidentate ligands. Calculating the Gibbs free energy for the reaction PaO(OH)2 (X)(H2 O)→Pa(OH)4 (X), we find that the PaO(OH)2 (X)(H2 O) complex is stabilized with Cl- , Br- , I- , NCS- , NO3 - , and SO4 2- ligands, while it is not favored with OH- , F- , and C2 O4 2- ligands. Quantum Theory of Atoms in Molecules (QTAIM) and Natural Bond Orbital (NBO) methods reveal the Pa mono-oxo bond as a triple bond, with significant contributions from the 5f and 6d shells. Covalency of the Pa mono-oxo bond increases with certain ligands, such as Cl- , Br- , I- , NCS- , and NO3 - . These findings elucidate protactinium's unique chemical attributes and provide insights into the conditions supporting the stability of relevant complexes.

3.
J Phys Chem A ; 127(48): 10104-10117, 2023 Dec 07.
Artigo em Inglês | MEDLINE | ID: mdl-37988629

RESUMO

We investigate the first direct proton abstraction reactions from reducing agents (RAHs) hydrazine and diethyl hydroxylamine (DEHA), toward dioxygen (O2) in the aqueous phase, spanning ambient to high-temperature conditions. Quantum chemistry methods and molecular dynamics simulations are employed in this study. Quantum chemistry methods are used to analyze the quasi-equilibrium between a reactive conformation and a transition state in the [RAH,O2] cluster. On the other hand, molecular dynamics simulations estimate the probability of observing a reactive conformation of the [RAH,O2] cluster in the solution. In this study, we assume that the energy barrier of the quasi-equilibrium is sufficiently high for the RAH/O2 association process to be at equilibrium. Our findings indicate that the first proton abstraction process from a reactive conformation cluster by DEHA is energetically favored compared to hydrazine. Conversely, the association process of hydrazine and O2 in solution is more favorable than that of DEHA. Consequently, the rate constant for the first proton abstraction process is similar for both hydrazine and DEHA, particularly at high temperatures, with activation energies of approximately 21.5 ± 1.5 kcal mol-1 for both compounds. These results align with recent experiments investigating the complete O2 scavenger process in liquid water with hydrazine and DEHA. Therefore, our findings support the assumption that first proton abstraction reactions are the rate-determining steps in O2 scavenger processes in the aqueous phase.

4.
Phys Chem Chem Phys ; 25(36): 24603-24612, 2023 Sep 20.
Artigo em Inglês | MEDLINE | ID: mdl-37665002

RESUMO

Polonium (Po, Z = 84) is a main-block element with poorly known physico-chemical properties. Not much information has been firmly acquired since its discovery by Marie and Pierre Curie in 1898, especially regarding its speciation in aqueous solution and spectroscopy. In this work, we revisit the absorption properties of two complexes, [PoCl5]- and [PoCl6]2-, using quantum mechanical calculations. These complexes have the potential to exhibit a maximum absorption at 418 nm in HCl medium (for concentrations of 0.5 mol L-1 and above). Initially, we examine the electronic spectra of the Po4+ free ion and of its isoelectronic analogue, Bi3+, in the spin-orbit configuration interaction (SOCI) framework. Our findings demonstrate that the SOCI matrix should be dressed with correlated electronic energies and that the quality of the spectra is largely improved by decontracting the reference states at the complete active space plus singles (CAS + S) level. Subsequently, we investigate the absorption properties of the [PoCl5]- and [PoCl6]2- complexes in two stages. Firstly, we perform methodological tests at the MP2/def2-TZVP gas phase geometries, indicating that the decontraction of the reference states can be skipped without compromising the accuracy significantly. Secondly, we study the solution absorption properties by means of single-point calculations performed at the solvated geometries, obtained by an implicit solvation treatment or a combination of implicit and explicit solvation. Our results highlight the importance of saturating the first coordination sphere of the PoIV ion to obtain a qualitatively correct picture. Finally, we conclude that the known-for-decades 418 nm peak could be attributed to a mixture of both the [PoCl5(H2O)]- and [PoCl6]2- complexes. This finding not only aligns with the behaviour of the analogous BiIII ion under similar conditions but also potentially provides an explanation for previous discrepancies in the literature.

5.
Phys Chem Chem Phys ; 25(35): 23667-23677, 2023 Sep 13.
Artigo em Inglês | MEDLINE | ID: mdl-37610078

RESUMO

The study of the intermolecular interactions of polycyclic aromatic compounds, considered as important pollutants of the Earth's atmosphere since they are emitted by the partial combustion of fuels, is essential to understand the formation and aging of their aerosols. In this study, the hydration of α-naphthaldehyde and ß-naphthaldehyde isomers was investigated through a combination of Fourier transform microwave spectroscopy and quantum chemical calculations. Monohydrate structures were observed experimentally for both isomers, with two hydrate structures observed for ß-naphthaldehyde and only one for α-naphthaldehyde, consistent with computational predictions. Analysis of the monohydrate structures indicated that the ß-isomer exhibits higher hydrophilicity compared to the α-isomer, supported by electronic densities, hydration energies, and structural considerations. Further computational calculations were conducted to explore the planarity of the naphthaldehyde hydrates. Different levels of theory were employed, some of these revealing slight deviations from planarity in the hydrate structures. Low-frequency out-of-plane vibrational modes were examined, and the inertial defect was used to assess the planarity of the hydrates. The results suggested that the hydrates possess a predominantly planar structure, in agreement with the highest level of computational calculations and the absence of c-type transitions in the experimental spectra. Additionally, calculations were extended to dihydrate structures by attaching two water molecules to the naphthaldehyde isomers. The most stable dihydrate structures were predicted to be combinations of the observed monohydrate positions. However, experimental observation of the most stable dihydrate structures was challenging due to their very low vapour pressure, calling for complementary experiments using laser ablation nozzles.

6.
J Chem Phys ; 158(21)2023 Jun 07.
Artigo em Inglês | MEDLINE | ID: mdl-37272578

RESUMO

We present a hybrid, multi-method, computational scheme for protein/ligand systems well suited to be used on modern and forthcoming massively parallel computing systems. The scheme relies on a multi-scale polarizable molecular modeling, approach to perform molecular dynamics simulations, and on an efficient Density Functional Theory (DFT) linear scaling method to post-process simulation snapshots. We use this scheme to investigate recent α-ketoamide inhibitors targeting the main protease of the SARS-CoV-2 virus. We assessed the reliability and the coherence of the hybrid scheme, in particular, by checking the ability of MM and DFT to reproduce results from high-end ab initio computations regarding such inhibitors. The DFT approach enables an a posteriori fragmentation of the system and an investigation into the strength of interaction among identified fragment pairs. We show the necessity of accounting for a large set of plausible protease/inhibitor conformations to generate reliable interaction data. Finally, we point out ways to further improve α-ketoamide inhibitors to more strongly interact with particular protease domains neighboring the active site.


Assuntos
COVID-19 , SARS-CoV-2 , Humanos , Ligantes , Reprodutibilidade dos Testes , Inibidores de Proteases/farmacologia , Inibidores de Proteases/química , Proteases 3C de Coronavírus , Simulação de Dinâmica Molecular , Domínio Catalítico , Simulação de Acoplamento Molecular
7.
Inorg Chem ; 62(24): 9273-9284, 2023 Jun 19.
Artigo em Inglês | MEDLINE | ID: mdl-37278409

RESUMO

Bent uranyl complexes can be formed with chloride ligands and 1,10-phenanthroline (phen) ligands bound to the equatorial and axial planes of the uranyl(VI) moiety, as revealed by the crystal structures, IR and Raman spectroscopy, and quantum-chemical calculations. With the goal of probing the influence of chloride and phenanthroline coordination enforcing the bending on the absorption and emission spectra of this complex, spin-orbit time-dependent density functional theory calculations for the bare uranyl complexes as well as for the free UO2Cl2 subunit and the UO2Cl2(phen)2 complex were performed. The emission spectra have been fully simulated by ab initio methods and compared to experimental photoluminescence spectra, recorded for the first time for UO2Cl2(phen)2. Notably, the bending of uranyl in UO2Cl2 and UO2Cl2(phen)2 triggers excitations of the uranyl bending mode, yielding a denser luminescence spectrum.

8.
Phys Chem Chem Phys ; 25(14): 10033-10041, 2023 Apr 05.
Artigo em Inglês | MEDLINE | ID: mdl-36961292

RESUMO

Protactinium (Z = 91) is a very rare actinide with peculiar physico-chemical properties. Indeed, although one may naively think that it behaves similarly to either thorium or uranium by its position in the periodic table, it may in fact follow its own rules. Because of the quite small energy gap between its valence shells (in particular the 5f and 6d ones) and also the strong influence of relativistic effects on its properties, it is actually a challenging element for theoretical chemists. In this article, we combine experimental information, chemical arguments and standard first-principle calculations, complemented by implicit and explicit solvation, to revisit the stepwise complexation of aqueous protactinium(V) with sulfate and oxalate dianionic ligands (SO42- and C2O42-, respectively). From a methodological viewpoint, we notably conclude that it is necessary to at least saturate the coordination sphere of protactinium(V) to reach converged equilibrium constant values. Furthermore, in the case of single complexations (i.e. with one sulfate or oxalate ligand bound in the bidentate fashion), we show that it is necessary to maintain the coordination of one hydroxyl group, present in the supposed [PaO(OH)]2+ precursor, to obtain coherent complexation constants. Therefore, we predict that this hydroxyl group is maintained in the formation of 1 : 1 complexes while we confirm that it is withdrawn when coordinating three sulfate or oxalate ligands. Finally, we stress that this work is a first step toward the future use of theoretical predictions to elucidate the enigmatic chemistry of protactinium in solution.

9.
Chem Sci ; 13(46): 13748-13763, 2022 Nov 30.
Artigo em Inglês | MEDLINE | ID: mdl-36544741

RESUMO

Reaction of [(XA2)U(CH2SiMe3)2] (1; XA2 = 4,5-bis(2,6-diisopropylanilido)-2,7-di-tert-butyl-9,9-dimethylxanthene) with 1 equivalent of [Ph3C][B(C6F5)4] in arene solvents afforded the arene-coordinated uranium alkyl cations, [(XA2)U(CH2SiMe3)(η n -arene)][B(C6F5)4] {arene = benzene (2), toluene (3), bromobenzene (4) and fluorobenzene (5)}. Compounds 2, 3, and 5 were crystallographically characterized, and in all cases the arene is π-coordinated. Solution NMR studies of 2-5 suggest that the binding preferences of the [(XA2)U(CH2SiMe3)]+ cation follow the order: toluene ≈ benzene > bromobenzene > fluorobenzene. Compounds 2-4 generated in C6H5R (R = H, Me or Br, respectively) showed no polymerization activity under 1 atm of ethylene. By contrast, 5 and 5-Th (the thorium analogue of 5) in fluorobenzene at 20 and 70 °C achieved ethylene polymerization activities between 16 800 and 139 200 g mol-1 h-1 atm-1, highlighting the extent to which common arene solvents such as toluene can suppress ethylene polymerization activity in sterically open f-element complexes. However, activation of [(XA2)An(CH2SiMe3)2] {M = U (1) or Th (1-Th)} with [Ph3C][B(C6F5)4] in n-alkane solvents did not afford an active polymerization catalyst due to catalyst decomposition, illustrating the critical role of PhX (X = H, Me, Br or F) coordination for alkyl cation stabilization. Gas phase DFT calculations, including fragment interaction calculations with energy decomposition and ETS-NOCV analysis, were carried out on the cationic portion of 2'-Th, 2', 3' and 5' (analogues of 2-Th, 2, 3 and 5 with hydrogen atoms in place of ligand backbone methyl and tert-butyl groups), providing insight into the nature of actinide-arene bonding, which decreases in strength in the order 2'-Th > 2' ≈ 3' > 5'.

10.
Chem Commun (Camb) ; 58(85): 11997-12000, 2022 Oct 25.
Artigo em Inglês | MEDLINE | ID: mdl-36218042

RESUMO

The synthesis and structures of the homoleptic hexanitrato complexes of Am(III) and Cm(III), [(CH3)4N]2KAn(NO3)6 are reported. These compounds form a double perovskite structure type, A2B'BX6, crystallizing in the cubic space group Fm3̄m. Their electronic properties, as calculated using the Quantum Theory of Atoms in Molecules, are reported and compared to their lanthanide homologues Eu(III) and Gd(III).

11.
Phys Chem Chem Phys ; 24(42): 26180-26189, 2022 Nov 02.
Artigo em Inglês | MEDLINE | ID: mdl-36278789

RESUMO

Polonium (Z = 84) is one of the rarest elements on Earth. More than a century after its discovery, its chemistry remains poorly known and even basic questions have not yet been satisfactorily addressed. In this work, we perform a systematic study of the geometries, interactions energies and bonding in basic polonium(IV) species, namely the hydrated [Po(H2O)n]4+ and chlorinated [PoCln]4-n complexes by means of gas-phase electronic structure calculations. We show that while up to nine water molecules can fit in the first coordination sphere of the polonium(IV) ion, its coordination sphere can already be filled with eight chloride ligands. Capitalising on previous theoretical studies, a focused methodological study based on interaction energies and bond distances allows us to validate the MP2/def2-TZVP level of theory for future ground-state studies. After discussing the similarities and differences between complexes with the same number of ligands, we perform topological analyses of the MP2 electron densities in the quantum theory of atoms in molecules (QTAIM) fashion. While the water complexes display typical signatures of closed-shell interactions, we reveal large Po-Cl delocalisation indices, especially in the hypothetical [PoCl]3+ complex. This "enhanced" covalency opens the way for a significant spin-orbit coupling (SOC) effect on the corresponding bond distance, which has been studied using two independent approaches (i.e. one a priori and one a posteriori). We finally conclude by stressing that while the SOC may not affect much the geometries of high-coordinated polonium(IV) complexes, it should definitely not be neglected in the case of low-coordinated ones.

12.
J Chem Theory Comput ; 18(10): 5992-6009, 2022 Oct 11.
Artigo em Inglês | MEDLINE | ID: mdl-36172757

RESUMO

Frozen density embedding (FDE) represents an embedding scheme in which environmental effects are included from first-principles calculations by considering the surrounding system explicitly by means of its electron density. In the present paper, we extend the full four-component relativistic Dirac-Kohn-Sham (DKS) method, as implemented in the BERTHA code, to include environmental and confinement effects with the FDE scheme (DKS-in-DFT FDE). The implementation, based on the auxiliary density fitting techniques, has been enormously facilitated by BERTHA's python API (PyBERTHA), which facilitates the interoperability with other FDE implementations available through the PyADF framework. The accuracy and numerical stability of this new implementation, also using different auxiliary fitting basis sets, has been demonstrated on the simple NH3-H2O system, in comparison with a reference nonrelativistic implementation. The computational performance has been evaluated on a series of gold clusters (Aun, with n = 2, 4, 8) embedded into an increasing number of water molecules (5, 10, 20, 40, and 80 water molecules). We found that the procedure scales approximately linearly both with the size of the frozen surrounding environment (consistent with the underpinnings of the FDE approach) and with the size of the active system (in line with the use of density fitting). Finally, we applied the code to a series of heavy (Rn) and super-heavy elements (Cn, Fl, Og) embedded in a C60 cage to explore the confinement effect induced by C60 on their electronic structure. We compare the results from our simulations, with respect to more-approximate models employed in the atomic physics literature. Our results indicate that the specific interactions described by FDE are able to improve upon the cruder approximations currently employed, and, thus, they provide a basis from which to generate more-realistic radial potentials for confined atoms.


Assuntos
Ouro , Água , Água/química
13.
Front Chem ; 10: 823246, 2022.
Artigo em Inglês | MEDLINE | ID: mdl-35295974

RESUMO

In this work we implement the real-time time-dependent block-orthogonalized Manby-Miller embedding (rt-BOMME) approach alongside our previously developed real-time frozen density embedding time-dependent density functional theory (rt-TDDFT-in-DFT FDE) code, and investigate these methods' performance in reproducing X-ray absorption spectra (XAS) obtained with standard rt-TDDFT simulations, for model systems comprised of solvated fluoride and chloride ions ([X@ ( H 2 O ) 8 - , X = F, Cl). We observe that for ground-state quantities such as core orbital energies, the BOMME approach shows significantly better agreement with supermolecular results than FDE for the strongly interacting fluoride system, while for chloride the two embedding approaches show more similar results. For the excited states, we see that while FDE (constrained not to have the environment densities relaxed in the ground state) is in good agreement with the reference calculations for the region around the K and L1 edges, and is capable of reproducing the splitting of the 1s1 (n + 1)p1 final states (n + 1 being the lowest virtual p orbital of the halides), it by and large fails to properly reproduce the 1s1 (n + 2)p1 states and misses the electronic states arising from excitation to orbitals with important contributions from the solvent. The BOMME results, on the other hand, provide a faithful qualitative representation of the spectra in all energy regions considered, though its intrinsic approximation of employing a lower-accuracy exchange-correlation functional for the environment induces non-negligible shifts in peak positions for the excitations from the halide to the environment. Our results thus confirm that QM/QM embedding approaches are viable alternatives to standard real-time simulations of X-ray absorption spectra of species in complex or confined environments.

14.
Inorg Chem ; 61(2): 890-901, 2022 Jan 17.
Artigo em Inglês | MEDLINE | ID: mdl-34881886

RESUMO

Uranyl binitrate complexes have a particular interest in the nuclear industry, especially in the reprocessing of spent nuclear fuel. The modified PUREX extraction process is designed to extract U(VI) in the form of UO2(NO3)2(L)2 as has been confirmed by extended X-ray absorption fine structure (EXAFS), X-ray diffraction (XRD), and time-resolved laser-induced fluorescence spectroscopy (TRLFS) measurements. In this study, the L ligands are two molecules of N,N-di-(ethyl-2-hexyl)isobutyramide (DEHiBA) monoamide used to bind uranyl in its first coordination sphere. DEHiBA ligands can coordinate uranyl in either trans- or cis-position with respect to the nitrate ligands, and these two conformers may coexist in solution. To use luminescence spectroscopy as a speciation technique, it is important to determine whether or not these conformers can be discriminated by their spectroscopic properties. To answer this question, the spectra of trans- and cis-UO2(NO3)2(DEiBA)2 conformers were modeled with ab initio methods and compared to the experimental time-resolved luminescence spectra on UO2(NO3)2(DEHiBA)2 systems. Moreover, the hydrated uranyl binitrate UO2(NO3)2(H2O)2 complexes in the same trans and cis configurations were modeled to quantify the impact of organic DEHiBA on the luminescence properties.

15.
Inorg Chem ; 60(13): 9727-9744, 2021 Jul 05.
Artigo em Inglês | MEDLINE | ID: mdl-34128679

RESUMO

Seven novel bismuth(III)-halide phases, Bi2Cl6(terpy)2·0.5(H2O) (1), Bi2Cl4(terpy)2(k2-TC)2(2) (TC = 2-thiophene monocarboxylate), BiCl(terpy)(k2-TC)2 (3A-Cl), BiBr(terpy)(k2-TC)2 (3A-Br), BiCl(terpy)(k2-TC)2 (3B-Cl), [BiCl(terpy)(k2-TC)2][Bi(terpy)(k2-TC)3]·0.55(TCA) (4), [BiBr3(terpy)(MeOH)] (5), and [BiBr2(terpy)(k2-TC)][BiBr1.16(terpy)(k2-TC)1.84] (6), were prepared under mild synthetic conditions from methanolic/aqueous solutions containing BiX3 (X = Cl, Br) and 2,2':6',2″-terpyridine (terpy) and/or 2-thiophene monocarboxylic acid (TCA). A heterometallic series, 3A-Bi1-xEuxCl, with the general formula Bi1-xEuxCl(terpy)(k2-TC)2 (x = 0.001, 0.005, 0.01, 0.05) was also prepared through trace Eu doping of the 3A-Cl phase. The structures were determined through single-crystal X-ray diffraction and are built from a range of molecular units including monomeric and dimeric complexes. The solid-state photoluminescent properties of the compounds were examined through steady-state and time-resolved methods. While the homometallic phases exhibited broad green to yellow emission, the heterometallic phases displayed yellow, orange, and red emission that can be attributed to the simultaneous ligand/Bi-halide and Eu centered emissions. Photoluminescent color tuning was achieved by controlling the relative intensities of these concurrent emissions through compositional modifications including the Eu doping percentage. Notably, all emissive homo- and heterometallic phases exhibited rare visible excitation pathways that based on theoretical quantum mechanical calculations are attributed to halide-metal to ligand charge transfer (XMLCT). Through a combined experimental and computational approach, fundamental insight into the structure-property relationships within these Bi halide organic hybrid materials is provided.

16.
Inorg Chem ; 60(14): 10656-10673, 2021 Jul 19.
Artigo em Inglês | MEDLINE | ID: mdl-34190549

RESUMO

The coordination chemistry of Cm(III) with aqueous phosphates was investigated by means of laser-induced luminescence spectroscopy and ab initio simulations. For the first time, in addition to the presence of Cm(H2PO4)2+, the formation of Cm(H2PO4)2+ was unambiguously established from the luminescence spectroscopic data collected at various H+ concentrations (-log10 [H+] = 2.52, 3.44, and 3.65), ionic strengths (0.5-3.0 mol·L-1 NaClO4), and temperatures (25-90 °C). Complexation constants for both species were derived and extrapolated to standard conditions using the specific ion interaction theory. The molal enthalpy ΔRHm0 and molal entropy ΔRSm0 of both complexation reactions were derived using the integrated van't Hoff equation and indicated an endothermic and entropy-driven complexation. For the Cm(H2PO4)2+ complex, a more satisfactory description could be obtained when including the molal heat capacity term. While monodentate binding of the H2PO4- ligand(s) to the central curium ion was found to be the most stable configuration for both complexes in our ab initio simulations and luminescence lifetime analyses, a different temperature-dependent coordination to hydration water molecules could be deduced from the electronic structure of the Cm(III)-phosphate complexes. More precisely, where the Cm(H2PO4)2+ complex could be shown to retain an overall coordination number of 9 over the entire investigated temperature range, a coordination change from 9 to 8 was established for the Cm(H2PO4)2+ species with increasing temperature.

17.
Phys Chem Chem Phys ; 23(3): 2229-2237, 2021 Jan 28.
Artigo em Inglês | MEDLINE | ID: mdl-33439157

RESUMO

The strong influence of the structure of amide derivatives on their extraction properties has been demonstrated in several studies in the literature. To investigate and rationalize the influence of the nature and length of the monoamide alkyl chains on Pu(iv) extraction/complexation, a theoretical study was performed using the Density Functional Theory (DFT) method in the scalar relativistic framework. For that, the geometries for the inner/outer-sphere complexes and interaction energies of [Pu(NO3)4] and [Pu(NO3)6]2- with different ligands have been calculated. For both inner and outer-sphere complexes, it is found that the introduction of a bulky alkyl group on the carbonyl side strongly diminishes the complexation energy. This is fully consistent with monamide extraction properties. The influence of the bulkiness of the alkyl group is as or even more important for outer than for inner-sphere interactions. This result was unexpected when considering that there are less flexibility and stronger steric constraints in the inner sphere compared to the outer one. However, this can be attributed to specific electrostatic interactions between the two outer-sphere amide ligands and two nitrate ions of [Pu(NO3)6]2-. By increasing the polarity of the solution, such interactions diminish and the outer-sphere ligands move away from [Pu(NO3)6]2-. Consequently, the solvent effects were found to be very significant for outer-sphere complexation while rather small for inner-sphere complexation. This gives the key possibility to tune the substituent effect by changing the polarity of the solution. As for carbamide ligands, it was found that the weak interactions (dispersion) have remarkable effects on both inner and outer-sphere complexations.

18.
Inorg Chem ; 59(20): 15036-15049, 2020 Oct 19.
Artigo em Inglês | MEDLINE | ID: mdl-33000939

RESUMO

The luminescence spectra of triscarbonatouranyl complexes were determined by experimental and theoretical methods. Time-resolved laser-induced fluorescence spectroscopy was used to monitor spectra of uranyl and bicarbonate solutions at 0.1 mol kgw-1 ionic strength and pH ca. 8. The concentrations of Mg2+ and Ca2+ in the samples were chosen in order to vary the proportions of the alkaline earth ternary uranyl complexes MgUO2(CO3)32-, CaUO2(CO3)32-, and Ca2UO2(CO3)3. The luminescence spectrum of each complex was determined by decomposition in order to compare it with the simulated spectra of model structures NamMnUO2(CO3)3(4-m-2n)- (M = Mg, Ca; m, n = 0-2) obtained by quantum chemical methods. The density functional theory (DFT) and time-dependent (TD)-DFT methods were used with the PBE0 functional to optimize the structures in the ground and excited states, respectively, including relativistic effects at the spin-free level, and water solvent effects using a continuum polarizable conductor model. The changes in the structural parameters were quantified with respect to the nature and the amount of alkaline earth counterions to explain the luminescence spectra behavior. The first low-lying excited state was successfully computed, together with the vibrational harmonic frequencies. The DFT calculations confirmed that uranyl luminescence originates from electronic transitions from one of the four nonbonding 5f orbitals of uranium to an orbital that has a uranyl-σ (5f, 6d) character mixed with the 2p atomic orbitals of the carbonate oxygens. Additional single-point calculations using the more accurate TD-DFT/CAM-B3LYP allow one to determine the position of the luminescence "hot band" for each structure in the range 467-476 nm and compared fairly well with experimental reports at around 465 nm. The complete luminescence spectra were built from theoretical results with the corresponding assignment of the electronic transitions and vibronic modes involved, mainly the U-Oax stretching mode. The resulting calculated spectra showed a very good agreement with experimental band positions and band spacing attributed to MgUO2(CO3)32-, CaUO2(CO3)32-, and Ca2UO2(CO3)3. The evolution of luminescence intensities with the number of alkaline earth metal ions in the structure was also correctly reproduced.

19.
Dalton Trans ; 49(33): 11756-11771, 2020 Aug 25.
Artigo em Inglês | MEDLINE | ID: mdl-32803206

RESUMO

Three bismuth(iii)-organic compounds, [Bi4Cl8(PDC)2(phen)4]·2MeCN (1), [BiCl3(phen)2] (2), and [Bi2Cl6(terpy)2] (3), were prepared from solvothermal reactions of bismuth chloride, 2,6-pyridinedicarboxylic acid (H2PDC), and 1,10-phenanthroline (phen) or 2,2';6',2''-terpyridine (terpy). The structures were determined through single crystal X-ray diffraction and the compounds were further characterized via powder X-ray diffraction, Raman and infrared spectroscopy, and thermogravimetric analysis. The photoluminescence properties of the solid-state materials were assessed using steady state and time-dependent techniques to obtain excitation and emission profiles as well as lifetimes. The compounds exhibit visible emission ranging from the yellow-green to orange region upon UV excitation. Theoretical quantum mechanical calculations aimed at elucidating the observed emissive behavior show that the transitions can be assigned as predominantly ligand-to-ligand and ligand-to-metal charge transfer transitions. The solid-state structural chemistry, spectroscopic properties, and luminescence behavior of the bismuth compounds are presented herein.

20.
J Phys Chem A ; 124(22): 4484-4495, 2020 Jun 04.
Artigo em Inglês | MEDLINE | ID: mdl-32406684

RESUMO

Polycyclic aromatic compounds (PACs) constitute an important class of molecules found in various environments and are considered important pollutants of the Earth's atmosphere. In particular, functionalization of PACs modify the ring aromaticity, which greatly influences the chemical reactivity of these species. In this work we studied several oxygen-containing PACs, relevant to atmospheric chemistry. We investigated the conformational landscape of four naphthalene-derivative molecules-namely, 1- and 2-hydroxynaphthalene and 1- and 2-naphthaldehyde-by means of rotational and vibrational spectroscopy supported by quantum chemical calculations. For 1-hydroxynaphthalene and 1-naphthaldehyde, intramolecular hydrogen bonding and steric effects drive the conformational preferences while for 2-hydroxynaphthalene and 2-naphthaldehyde, the charge distributions allow us to understand the conformational landscape. This work not only demonstrates how the localization of the substitution group in the ring influences the conformational relative energies and but also constitutes a step toward a better understanding of the different chemical reactivity of such functionalized PACs.

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