Terrain, oceanographic, and biological factors underlying the development of Mediterranean coastal animal forests.

Marine Animal Forests (MAFs) form three-dimensional seascapes and provide substrate and shelter for a variety of species. We investigated the fine-scale distribution pattern of three habitat-forming species of the coastal Mediterranean MAFs: Eunicella cavolini, E. singularis and Paramuricea clavata, and assessed the influence of terrain, oceanographic, and biological factors on their distribution and the formation of MAFs in the central-northern Tyrrhenian Sea. Species presence and abundance were obtained through seafloor HD imagery and were combined with terrain and oceanographic parameters extracted from remote sensing data using distance-based linear modeling (DistLM) and generalized additive model (GAM). The three studied species occurred in all the study areas, with marked differences in their abundance and distribution across the different sites and habitat type, in relation to seafloor characteristics. Specifically, positive relationships emerged between the density of colonies and terrain parameters indicative of high seafloor complexity, such as slope and roughness, as well as the number species structuring MAFs. A clear niche separation for the three species was observed: E. cavolini and P. clavata were reported on coralligenous reefs, and in areas where the seafloor complexity may enhance hydrodynamics and transport of organic matter, while E. singularis was observed on red algal mats at shallower depths. A better understanding of the ecology of these gorgonians, as well as of the drivers determining MAFs formation, represent the first step toward the conservation of these threatened habitats which are currently poorly protected by management and conservation plans.

Tracing the route: Using stable isotope analysis to understand microplastic pathways through the pelagic-neritic food web of the Tyrrhenian Sea (Western Mediterranean).

This study provides a pilot investigation of the relationship between microplastic ingestion and the trophic ecology of three pelagic fish species (Engraulis encrasicolus, Scomber scombrus, and Trachurus trachurus) from Anzio coast, Tyrrhenian Sea (Western Mediterranean). Stable isotope analysis has been performed to determine the trophic position and the isotopic niche of the three species. Then, data on the occurrence, abundance, and diversity of ingested microplastics have been analyzed considering the observed foraging patterns. The detected differences in the estimated trophic position (E. encrasicolus = 3.08 ± 0.18; S. scombrus = 3.57 ± 0.21; T. trachurus = 4.07 ± 0.21), together with the absence of overlap in the isotopic niches confirm that the three examined species cover different ecological roles within the coastal-pelagic food web. Results from the analysis of ingested microplastics show that the trophic position has no remarkable effects on the incidence of microplastic ingestion, with no significant differences detected in terms of both frequency of occurrence and number of ingested microplastics per individual. However, differences among species emerge when considering the diversity of ingested microplastic types in terms of shape, size, color, and polymer composition. Species at higher trophic levels have shown to ingest a greater diversity of microplastics, including a significant increase in the size of the ingested particles (median surface area: 0.011 mm2 in E. encrasicolus; 0.021 mm2 in S. scombrus; 0.036 mm2 in T. trachurus). The ingestion of larger microplastics might be due to the larger gape sizes but also to active selection mechanisms, likely stimulated by the similarity of these particles to natural or potential prey of both S. scombrus and T. trachurus. Overall, this study suggests that microplastic ingestion can be affected by the different trophic position of fish species, providing new insights about the impact of microplastic contamination on the pelagic community.

Image processing tools in the study of environmental contamination by microplastics: reliability and perspectives.

Microplastic pollution is one of the greatest environmental concerns for contemporary times and the future. In the last years, the number of publications about microplastic contamination has increased rapidly and the list is daily updated. However, the lack of standard analytical approaches might generate data inconsistencies, reducing the comparability among different studies. The present study investigates the potential of two image processing tools (namely the shapeR package for R and ImageJ 1.52v) in providing an accurate characterization of the shape of microplastics using a restricted set of shape descriptors. To ascertain that the selected tools can measure small shape differences, we perform an experiment to verify the detection of pre-post variations in the shape of different microplastic types (i.e., nylon [NY], polyethylene [PE], polyethylene terephthalate [PET], polypropylene [PP], polystyrene [PS], and polyvinylchloride [PVC]) treated with mildly corrosive chemicals (i.e., 10% KOH at 60 °C, 30% H2O2 at 50 °C, and 15% H2O2 + 5% HNO3 at 40 °C; incubation time ≈ 12 h). Analysis of surface area variations returns results about the vulnerability of plastic polymers to digestive solutions that are aligned with most of the acquired knowledge. The largest decrease in surface area occurs for KOH-treated PET particles, while NY results in the most susceptible polymer to the 30% H2O2 treatment, followed by PVC and PS. PE and PP are the most resistant polymers to all the used treatments. The adopted methods to characterize microplastics seem reliable tools for detecting small differences in the shape and size of these particles. Then, the analytic perspectives that can be developed using such widely accessible and low-cost equipment are discussed.

One is not enough: Monitoring microplastic ingestion by fish needs a multispecies approach.

The development of monitoring programs based on bioindicators is crucial for assessing the impact of microplastic ingestion on marine organisms. This study presents results from an Italian pilot action aimed at investigating the suitability of a monitoring strategy based on a multispecies approach. The benthic-feeder Mullus barbatus, the demersal species Merluccius merluccius, and the pelagic-feeder species of the genus Scomber were used to assess the environmental contamination by microplastics in three different marine areas, namely Ancona (Adriatic Sea), Anzio (Tyrrhenian Sea), and Oristano (Western Sardinia). Microplastic ingestion frequencies were higher in samples from Anzio (26.7 %) and Ancona (25.0 %) than Oristano (14.4 %), suggesting a relationship between microplastic bioavailability and the proximity to urban settlements and river flows. Furthermore, microplastic ingestion was affected by the feeding habits of the examined species. The detected differences reinforce the hypothesis that a multispecies approach is needed to evaluate microplastic ingestion by marine animals.

Integrating low-altitude drone based-imagery and OBIA for mapping and manage semi natural grassland habitats.

Monitoring semi-natural grasslands is difficult and costly because they occur in highly dynamic and extremely complex habitat mosaics. We combined the use of a low-cost unmanned aerial vehicle (UAV) and Structure from Motion (SfM) photogrammetry to acquire high spatial resolution (∼1.5 cm pixel) RGB imagery. After image classification through Object-Based Image Analysis (OBIA), we accurately were able to distinguish three semi-natural grassland types, one of which is a habitat of conservation concern. The use of orthomosaics, digital elevation models (DEMs), and canopy height models (CHMs) yielded excellent overall classification accuracies (>89%) assessed through both remotely validated and ground-truthed points. We identified two layers of woody vegetation with a user's (UA) and producer's (PA) accuracies >73% and three grassland types: closed grassland (UA = 94%; PA = 97%), open grassland habitat (UA = 97%; PA = 93%) and open grasslands with soil erosion (UA = 96%; PA = 98%). The grassland types differed substantially in the cover of vegetation, rocks, stones, and bare soil measured in the field, as well as in the number and relative cover of the habitat diagnostic species. The proposed methodology is highly promising for mapping and monitoring semi-natural grassland of conservation concern in support of tailored management actions.

High spatial resolution underwater data for mapping seagrass transplantation: A powerful tool for visualization and analysis.

These datasets derived from our mapping protocol are presented as a research article in the Journal of Environmental Management [1]. In particular, by using a Structure from Motion photogrammetric workflow we produced high spatial resolution 2D raster maps and 3D outputs such as dense points clouds and textured meshes of an underwater seagrass restoration site. In this area transplanted fragments of Posidonia oceanica were planted to restore this impacted site after the Costa Concordia shipwrecking which occurred on 13 January 2012 along the NE coast of Giglio Island (Tuscany, Italy). Photogrammetric outputs were used to render the underwater environment by using the open-source software Blender allowing a fine 3D modelling and immersive visualization of the mapped area. This data other than providing an exceptional tool for analysing the benthic habitats from a biological point of view, following over time the progress transplanting operations, might also provide a new way to visualize and share the perception of such underwater shallow environments to a large plethora of users, increasing the public awareness on restoration programmes and promoting new action aimed at restored underwater habitats restoration.

Seagrass restoration monitoring and shallow-water benthic habitat mapping through a photogrammetry-based protocol.

Seagrasses rank among the most productive yet highly threatened ecosystems on Earth. Loss of seagrass habitat because of anthropogenic disturbances and evidence of their limited resilience have provided the impetus for investigating and monitoring habitat restoration through transplantation programmes. Although Structure from Motion (SfM) photogrammetry is becoming a more and more relevant technique for mapping underwater environments, no standardised methods currently exist to provide 3-dimensional high spatial resolution and accuracy cartographic products for monitoring seagrass transplantation areas. By synthesizing various remote sensing applications, we provide an underwater SfM-based protocol for monitoring large seagrass restoration areas. The data obtained from consumer-grade red-green-blue (RGB) imagery allowed the fine characterization of the seabed by using 3D dense point clouds and raster layers, including orthophoto mosaics and Digital Surface Models (DSM). The integration of high spatial resolution underwater imagery with object-based image classification (OBIA) technique provided a new tool to count transplanted Posidonia oceanica fragments and estimate the bottom coverage expressed as a percentage of seabed covered by such fragments. Finally, the resulting digital maps were integrated into Geographic Information Systems (GIS) to run topographic change detection analysis and evaluate the mean height of transplanted fragments and detect fine-scale changes in seabed vector ruggedness measure (VRM). Our study provides a guide for creating large-scale, replicable and ready-to-use products for a broad range of applications aimed at standardizing monitoring protocols in future seagrass restoration actions.

Population status, distribution and trophic implications of Pinna nobilis along the South-eastern Italian coast.

The dramatic Mass Mortality Event, MME, of Pinna nobilis populations initially detected in the western Mediterranean basin, has also spread rapidly to the central and eastern basin. Unfortunately, there is still a significant lack of information on the status and health of P. nobilis, since only a fragmentary picture of the mortality rate affecting these populations is available. Regarding the Italian coast, several surveys have given only localized or point-like views on the distribution of species and the effect of the MME. Therefore, for the first time, this study investigated P. nobilis density of individuals, distribution and mortality throughout 161 surveys along 800 km of coastline in the Apulia region (South-east of Italy). The geographical scale of this investigation made it the largest ever conducted in Italy, and this was achieved through a rapid and standardized protocol. During this monitoring campaign, 90 km of linear underwater transects were surveyed, along which no live individuals were observed. This result allowed to estimate that the P. nobilis populations had totally collapsed, with a mortality rate of 100% in Apulia. The distributional pattern of the species showed a strong overlap with seagrass meadows on meso- and macro-geographical scale, however this was not the case on a micro-scale. This result evidenced that relationships between P. nobilis and seagrass meadows are not limited to the habitat patch, but cross the boundaries of seagrass leading us to suggest that the distribution of P. nobilis hold a trophic link through the cross-boundary subsidy occurring from seagrass meadows to the nearby habitat, by means of the refractory detrital pathway.

Capitoline Dolphins: Residency Patterns and Abundance Estimate of Tursiops truncatus at the Tiber River Estuary (Mediterranean Sea).

Periodic assessments of population status and trends to detect natural influences and human effects on coastal dolphin are often limited by lack of baseline information. Here, we investigated for the first time the site-fidelity patterns and estimated the population size of bottlenose dolphins (Tursiops truncatus) at the Tiber River estuary (central Mediterranean, Tyrrhenian Sea, Rome, Italy) between 2017 and 2020. We used photo-identification data and site-fidelity metrics to study the tendency of dolphins to remain in, or return to, the study area, and capture-recapture models to estimate the population abundance. In all, 347 unique individuals were identified. The hierarchical cluster analysis highlighted 3 clusters, labeled resident (individuals encountered at least five times, in three different months, over three distinct years; n = 42), part-time (individuals encountered at least on two occasions in a month, in at least two different years; n = 73), and transient (individuals encountered on more than one occasion, in more than 1 month, none of them in more than 1 year; n = 232), each characterized by site-fidelity metrics. Open POPAN modeling estimated a population size of 529 individuals (95% CI: 456-614), showing that the Capitoline (Roman) coastal area and nearby regions surrounding the Tiber River estuary represent an important, suitable habitat for bottlenose dolphins, despite their proximity to one of the major urban centers in the world (the city of Rome). Given the high number of individuals in the area and the presence of resident individuals with strong site fidelity, we suggest that conservation plans should not be focused only close to the Tiber River mouths but extended to cover a broader scale of area.

Are developmental shifts the main driver of phenotypic evolution in Diplodus spp. (Perciformes: Sparidae)?

BACKGROUND: Sparid fishes of the genus Diplodus show a complex life history. Juveniles have adaptations well suited to life in the water column. When fishes recruit into the adult population, individuals develop a radically differentiated shape that reflects their adaptation to the new benthic environment typical of the adult. A comparative analysis of ontogenetic trajectories was performed to assess the presence of divergence in the developmental pattern. By using a geometric morphometric approach, we investigated the pattern of shape variation across ontogenetic stages that span from early settlement to the adult stage in four species of the genus Diplodus. Landmarks were collected on the whole body of fishes to quantify the phenotypic variation along two well defined life stages, i.e. juvenile and adult. A comparative analysis of ontogenetic trajectories was performed to assess the presence of divergence in the developmental pattern. Subsequently, we investigated the patterns of integration and modularity as proxy for the alteration of the developmental processes. This have allowed to give an insight in morphological developmental patterns across ecologically and ontogenetically differentiated life stages and to investigate the process leading to the adult shape. RESULT: Our results suggest that the origin of morphological novelties in Diplodus spp. arise from shifts of the ontogenetic trajectories during development. During the settlement phase, the juveniles' morphological shapes converge towards similar regions of the morphospace. When the four species approach the transition between settlement and recruitment, we observe the lowest level of inter- and intra-specific disparity. After this transition we detect an abrupt shift of ontogenetic trajectories, i.e. the path taken by species during development, that led to highly divergent adult phenotypes. DISCUSSION: We suggest that the evolution of new ecomorphologies, better suited to exploit different niches (pelagic vs. benthonic) and reduce inter-specific competition in Diplodus spp., are related to the shift in the ontogenetic trajectory that in turn is associated to changes in modularity and integration pattern.

Macrofaunal biodiversity associated with different developmental phases of a threatened Mediterranean Sabellaria alveolata (Linnaeus, 1767) reef.

Sabellaria alveolata is an ecosystem engineer species capable of building bioconstructions, playing a key functional role in the shallow coastal ecosystems. S. alveolata reefs perform several ecosystem services, such as hosting a rich fauna and producing structures able to provide coastal protection. Despite their ecological role, these bioconstructions have been poorly investigated in the Mediterranean Sea. In this study, the largest Mediterranean S. alveolata reef, located along the Latium coast, was recorded and an habitat mapping duly carried out. During a one-year study, the balance between reef status and associated fauna was investigated using a multidisciplinary approach, the different phases in the annual cycle of S. alveolata were detected and the reef's influence on the diversity of associated macrofauna was assessed. The retrograding phase was detected in September, due to the damages by trampling disturbance, while the growing phase began in March. The comparison with the fauna of the adjacent substrates was also performed, demonstrating that the reef supported a high diversity of associated fauna and qualifying the reef as a biodiversity hotspot. Aimed at improving knowledge of Mediterranean reefs, our study lays the basis for more effective management plans and protection strategies for the threatened biogenic habitats.

Feeding ecology of some fish species occurring in artisanal fishery of Socotra Island (Yemen).

The demersal species Lethrinus borbonicus, Lethrinus mahsena, Lethrinus microdon, Lethrinus nebulosus, Lutjanus bohar, Lutjanus gibbus, Lutjanus kasmira, Epinephelus fasciatus, Epinephelus stoliczkae, Carangoides gymnostethus and Euthynnus affinis are important coastal fishes species of the northern coast of Socotra (Yemen), exploited by local fishery. The biology and feeding ecology of these species are poorly known in the area. A total of 1239 specimens were sampled from the main fishing landing site of the island (Hadibo). Total length and weight were measured, stomach contents were analyzed, diet overlap, Fulton's Condition index, and trophic levels were estimated. C. gymnostethus, L. microdon and L. kasmira occupied the highest position (T=4.50), L. nebulosus occupied the lower one (TL=3.41). The role of the increasing abundance of small pelagic fish in the diet of many species after the upwelling event is evident, but also different feeding strategies are reported, according to fish ecology.