Automatic single cell segmentation on highly multiplexed tissue images.

The combination of mass cytometry and immunohistochemistry (IHC) enables new histopathological imaging methods in which dozens of proteins and protein modifications can be visualized simultaneously in a single tissue section. The power of multiplexing combined with spatial information and quantification was recently illustrated on breast cancer tissue and was described as next-generation IHC. Robust, accurate, and high-throughput cell segmentation is crucial for the analysis of this new generation of IHC data. To this end, we propose a watershed-based cell segmentation, which uses a nuclear marker and multiple membrane markers, the latter automatically selected based on their correlation. In comparison with the state-of-the-art segmentation pipelines, which are only using a single marker for object detection, we could show that the use of multiple markers can significantly increase the segmentation power, and thus, multiplexed information should be used and not ignored during the segmentation. Furthermore, we provide a novel, user-friendly open-source toolbox for the automatic segmentation of multiplexed histopathological images.

High-speed, high-resolution, multielemental LA-ICP-TOFMS imaging: part II. critical evaluation of quantitative three-dimensional imaging of major, minor, and trace elements in geological samples.

Here we describe the capabilities of laser-ablation coupled to inductively coupled plasma time-of-flight mass spectrometry (LA-ICP-TOFMS) for high-speed, high-resolution, quantitative three-dimensional (3D) multielemental imaging. The basic operating principles of this instrumental setup and a verification of 3D quantitative elemental imaging are provided. To demonstrate the potential of 3D LA-ICP-TOFMS imaging, high-resolution multielement images of a cesium-infiltrated Opalinus clay rock were recorded using LA with a laser-spot diameter of 5 µm coupled to ICP-TOFMS. Quantification of elements ablated from each individual laser pulse was carried out by 100% mass normalization, and the 3D elemental concentration images generated match well with the expected distribution of elements. After laser-ablation imaging, the sample surface morphology was investigated using confocal microscopy, which showed substantial surface roughness and evidence of matrix-dependent ablation yields. Depth assignment based on ablation yields from heterogeneous materials, such as Opalinus clay rock, will remain a challenge for 3D LA-ICPMS imaging. Nevertheless, this study demonstrates quantitative 3D multielemental imaging of geological samples at a considerably higher image-acquisition speed than previously reported, while also offering high spatial resolution and simultaneous multielemental detection.

High-speed, high-resolution, multielemental laser ablation-inductively coupled plasma-time-of-flight mass spectrometry imaging: part I. Instrumentation and two-dimensional imaging of geological samples.

Low-dispersion laser ablation (LA) has been combined with inductively coupled plasma-time-of-flight mass spectrometry (ICP-TOFMS) to provide full-spectrum elemental imaging at high lateral resolution and fast image-acquisition speeds. The low-dispersion LA cell reported here is capable of delivering 99% of the total LA signal within 9 ms, and the prototype TOFMS instrument enables simultaneous and representative determination of all elemental ions from these fast-transient ablation events. This fast ablated-aerosol transport eliminates the effects of pulse-to-pulse mixing at laser-pulse repetition rates up to 100 Hz. Additionally, by boosting the instantaneous concentration of LA aerosol into the ICP with the use of a low-dispersion ablation cell, signal-to-noise (S/N) ratios, and thus limits of detection (LODs), are improved for all measured isotopes; the lowest LODs are in the single digit parts per million for single-shot LA signal from a 10-µm diameter laser spot. Significantly, high-sensitivity, multielemental and single-shot-resolved detection enables the use of small LA spot sizes to improve lateral resolution and the development of single-shot quantitative imaging, while also maintaining fast image-acquisition speeds. Here, we demonstrate simultaneous elemental imaging of major and minor constituents in an Opalinus clay-rock sample at a 1.5 µm laser-spot diameter and quantitative imaging of a multidomain Pallasite meteorite at a 10 µm LA-spot size.

Element analysis of small and even smaller objects by ICPMS and LA-ICPMS.

Inductively coupled plasma mass spectrometry is increasingly used for non-traditional applications such as the analysis of solids at high spatial resolution when combined with laser ablation or the analysis of engineered nanoparticles. This report highlights recent projects and discusses the potentials and limitations these techniques offer. High-resolution laser ablation instrumentation allows element imaging at the µm-scale and can, therefore, be applied to, e.g., the mapping of metal isotope-labeled antibodies in biological tissues. Despite these advancements, the quantitative analysis of laser-produced aerosols is still a major concern. Here, the accuracy of analysis was found to strongly depend on particle size distribution but also on the morphology and composition of particles. In order to achieve a controlled supply of nanoparticles for analysis by inductively coupled plasma mass spectrometry, a dedicated microdroplet injection system was developed and characterized. This system allows a reproducible injection of single nanoparticles together with internal standards to determine their mass and composition.

Highly multiplexed imaging of tumor tissues with subcellular resolution by mass cytometry.

Mass cytometry enables high-dimensional, single-cell analysis of cell type and state. In mass cytometry, rare earth metals are used as reporters on antibodies. Analysis of metal abundances using the mass cytometer allows determination of marker expression in individual cells. Mass cytometry has previously been applied only to cell suspensions. To gain spatial information, we have coupled immunohistochemical and immunocytochemical methods with high-resolution laser ablation to CyTOF mass cytometry. This approach enables the simultaneous imaging of 32 proteins and protein modifications at subcellular resolution; with the availability of additional isotopes, measurement of over 100 markers will be possible. We applied imaging mass cytometry to human breast cancer samples, allowing delineation of cell subpopulations and cell-cell interactions and highlighting tumor heterogeneity. Imaging mass cytometry complements existing imaging approaches. It will enable basic studies of tissue heterogeneity and function and support the transition of medicine toward individualized molecularly targeted diagnosis and therapies.

Fast chemical imaging at high spatial resolution by laser ablation inductively coupled plasma mass spectrometry.

In recent years, chemical imaging was prognosticated to become one of the key analytical applications for laser ablation inductively coupled plasma mass spectrometry (LA-ICP-MS). However, moderate spatial resolution and the associated measurement time required for a larger sampling area, have restricted this versatile, high sensitivity technique from being routinely used in two-dimensional chemical imaging. This work describes the development and investigation of a low dispersion sample chamber (tube cell), which allows improvement of the imaging capabilities by reduction of the single LA shot duration to 30 ms (full width at 1% maximum). The new tube cell is based on a constant laminar flow and a well-controlled delivery of the laser-ablated aerosol into the transport system, leading to minimized tailing of the aerosol washout and helping to separate the signals even at repetition rates as high as 20-30 Hz. To demonstrate the improved imaging capabilities, microstructured metallic thin film patterns were analyzed at a spatial resolution of a few micrometers. The LA-ICP-MS results obtained were comparable to Synchrotron-based micro-X-ray fluorescence (SR-microXRF). The suitability of the newly designed cell for multielement acquisitions was demonstrated using a simultaneous ICP-Mattauch-Herzog-MS. Finally, the novel laser ablation cell was applied to image the distribution of a metal-tagged biomarker in a thin section of breast cancer tissue. This application demonstrates that the technique is able to produce subcellular (~1 µm) spatial resolution, which is crucial for morphological assessment in cancer diagnostics.

High spatial resolution quantitative imaging by cross-calibration using Laser Ablation Inductively Coupled Plasma Mass Spectrometry and Synchrotron micro-X-ray Fluorescence technique.

High spatial resolution, quantitative chemical imaging is of importance to various scientific communities, however high spatial resolution and robust quantification are not trivial to attain at the same time. In order to achieve microscopic chemical imaging with enhanced quantification capabilities, the current study links the independent and complementary advantages of two micro-analytical techniques - Synchrotron Radiation-based micro X-ray Fluorescence (SR-microXRF) and Laser Ablation Inductively Coupled Plasma Mass Spectrometry (LA-ICPMS). A cross-calibration approach is established between these two techniques and validated by one experimental demonstration. In the presented test case, the diffusion pattern of trace level Cs migrating into a heterogeneous geological medium is imaged quantitatively with high spatial resolution. The one-dimensional line scans and the two-dimensional chemical images reveal two distinct types of geochemical domains: calcium carbonate rich domains and clay rich domains. During the diffusion, Cs shows a much higher interfacial reactivity within the clay rich domain, and turns out to be nearly non-reactive in the calcium carbonate domains. Such information obtained on the micrometer scale improves our chemical knowledge concerning reactive solute transport mechanism in heterogeneous media. Related to the chosen demonstration study, the outcome of the quantitative, microscopic chemical imaging contributes to a refined safety assessment of potential host rock materials for deep-geological nuclear waste storage repositories.