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1.
J Bone Oncol ; 45: 100593, 2024 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-38495379

RESUMO

Background and objective: Pelvic bone tumors represent a harmful orthopedic condition, encompassing both benign and malignant forms. Addressing the issue of limited accuracy in current machine learning algorithms for bone tumor image segmentation, we have developed an enhanced bone tumor image segmentation algorithm. This algorithm is built upon an improved full convolutional neural network, incorporating both the fully convolutional neural network (FCNN-4s) and a conditional random field (CRF) to achieve more precise segmentation. Methodology: The enhanced fully convolutional neural network (FCNN-4s) was employed to conduct initial segmentation on preprocessed images. Following each convolutional layer, batch normalization layers were introduced to expedite network training convergence and enhance the accuracy of the trained model. Subsequently, a fully connected conditional random field (CRF) was integrated to fine-tune the segmentation results, refining the boundaries of pelvic bone tumors and achieving high-quality segmentation. Results: The experimental outcomes demonstrate a significant enhancement in segmentation accuracy and stability when compared to the conventional convolutional neural network bone tumor image segmentation algorithm. The algorithm achieves an average Dice coefficient of 93.31 %, indicating superior performance in real-time operations. Conclusion: In contrast to the conventional convolutional neural network segmentation algorithm, the algorithm presented in this paper boasts a more intricate structure, proficiently addressing issues of over-segmentation and under-segmentation in pelvic bone tumor segmentation. This segmentation model exhibits superior real-time performance, robust stability, and is capable of achieving heightened segmentation accuracy.

2.
J Bone Oncol ; 42: 100502, 2023 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-37736418

RESUMO

Background and objective: Bone tumor is a kind of harmful orthopedic disease, there are benign and malignant points. Aiming at the problem that the accuracy of the existing machine learning algorithm for bone tumor image segmentation is not high, a bone tumor image segmentation algorithm based on improved full convolutional neural network which consists fully convolutional neural network (FCNN-4s) and conditional random field (CRF). Methodology: The improved fully convolutional neural network (FCNN-4s) was used to perform coarse segmentation on preprocessed images. Batch normalization layers were added after each convolutional layer to accelerate the convergence speed of network training and improve the accuracy of the trained model. Then, a fully connected conditional random field (CRF) was fused to refine the bone tumor boundary in the coarse segmentation results, achieving the fine segmentation effect. Results: The experimental results show that compared with the traditional convolutional neural network bone tumor image segmentation algorithm, the algorithm has a great improvement in segmentation accuracy and stability, the average Dice can reach 91.56%, the real-time performance is better. Conclusion: Compared with the traditional convolutional neural network segmentation algorithm, the algorithm in this paper has a more refined structure, which can effectively solve the problem of over-segmentation and under-segmentation of bone tumors. The segmentation prediction has better real-time performance, strong stability, and can achieve higher segmentation accuracy.

3.
Biology (Basel) ; 12(1)2023 Jan 09.
Artigo em Inglês | MEDLINE | ID: mdl-36671789

RESUMO

Among the anthropogenic stresses that marine ecosystems face, biological invasions are one of the major threats. Recently, as a result of increasingly intense anthropogenic disturbance, numerous marine species have been introduced to their non-native ranges. However, many introduced species have uncertain original sources. This prevents the design and establishment of methods for controlling or preventing these introduced species. In the present study, genomic sequencing and population genetic analysis were performed to detect the geographic origin of the introduced Pinctada fucata population in the Mischief Reef of the South China Sea. The results of population genetic structure analysis showed a close relationship between the Mischief Reef introduced population and the Lingshui population, indicating that Lingshui may be the potential geographical origin. Furthermore, lower heterozygosity and nucleotide diversity were observed in the introduced population in Mischief Reef, indicating lower genetic diversity than in other native populations. We also identified some selected genomic regions and genes of the introduced population, including genes related to temperature and salinity tolerance. These genes may play important roles in the adaptation of the introduced population. Our study will improve our understanding of the invasion history of the P. fucata population. Furthermore, the results of the present study will also facilitate further control and prevention of invasion in Mischief Reef, South China Sea.

4.
Ann Clin Lab Sci ; 53(6): 920-930, 2023 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-38182151

RESUMO

OBJECTIVE: Osteosarcoma is the most common malignant bone cancer and is typically associated with poor prognosis. Histone deacetylase 8 (HDAC8) presents as an effective target in anti-tumor treatment in various tumors. As the functions of HDAC8 in osteosarcoma have not been studied thoroughly, our study aims to explore the effects of HDAC8 in osteosarcoma proliferation. METHODS: HDAC8 expression was analyzed in The Cancer Genome Atlas (TCGA)-pan-cancer dataset. The expression of HDAC8 in osteosarcoma cell lines was detected by western blot. TM-2-51, an activator of HDAC8, was taken to promote HDAC8 expression in osteosarcoma cells. Cell Counting Kit-8 (CCK-8) assay was applied to analyze cell viability changes and colony formation while 5-ethynyl-29-deoxyuridine (EdU) assays were used to evaluate cell proliferation. The migration and invasion abilities were analyzed by transwell assay, the distributions of cell cycle were analyzed by flow cytometry, and xenograft models were used to study the effect of HDAC8 activation in vivo. Furthermore, the mechanism underlying HDAC8's influence in osteosarcoma was analyzed by western blot assay. RESULTS: Our study demonstrated that activation of HDAC8 in osteosarcoma cells can suppress cell viability, proliferation, migration, invasion, and arrest cell cycle of the osteosarcoma cells via TP53 and STAT3/ERK signaling pathway. Xenograft models confirmed that HDAC8 activation can reduce tumor growth in vivo. CONCLUSION: The activation of HDCA8 could contribute negatively to osteosarcoma proliferation, and HDAC8 may represent a valuable therapeutic target in osteosarcoma therapy.


Assuntos
Neoplasias Ósseas , Histona Desacetilases , Osteossarcoma , Animais , Humanos , Neoplasias Ósseas/genética , Proliferação de Células , Modelos Animais de Doenças , Histona Desacetilases/genética , Osteossarcoma/genética , Proteínas Repressoras , Transdução de Sinais , Fator de Transcrição STAT3 , Proteína Supressora de Tumor p53 , Quinases de Proteína Quinase Ativadas por Mitógeno
5.
Mitochondrial DNA B Resour ; 7(10): 1851-1853, 2022.
Artigo em Inglês | MEDLINE | ID: mdl-36325290

RESUMO

The ocellated angelshark (Squatina tergocellatoides Chen, 1963) is a threatened shark within the family Squatinidae. In the present study, we reported the mitochondrial genome sequence of the ocellated angelshark. The complete mitochondrial genome is 16,683 bp in length and contains 37 mitochondrial genes and a control region as similar to most fishes. In addition, we constructed a maximum-likelihood phylogenetic tree of S. tergocellatoides and its relative species. This work will provide molecular data for further studies on S. tergocellatoides.

6.
PeerJ ; 10: e14342, 2022.
Artigo em Inglês | MEDLINE | ID: mdl-36389430

RESUMO

Sexual growth dimorphism is a common phenomenon in teleost fish and has led to many reproductive strategies. Growth- and sex-related gene research in teleost fish would broaden our understanding of the process. In this study, transcriptome sequencing of shortfin scad Decapterus macrosoma was performed for the first time, and a high-quality reference transcriptome was constructed. After identification and assembly, a total of 58,475 nonredundant unigenes were obtained with an N50 length of 2,266 bp, and 28,174 unigenes were successfully annotated with multiple public databases. BUSCO analysis determined a level of 92.9% completeness for the assembled transcriptome. Gene expression analysis revealed 2,345 differentially expressed genes (DEGs) in the female and male D. macrosoma, 1,150 of which were female-biased DEGs, and 1,195 unigenes were male-biased DEGs. Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) analyses showed that the DEGs were mainly involved in biological processes including protein synthesis, growth, rhythmic processes, immune defense, and vitellogenesis. Then, we identified many growth- and sex-related genes, including Igf, Fabps, EF-hand family genes, Zp3, Zp4 and Vg. In addition, a total of 19,573 simple sequence repeats (SSRs) were screened and identified from the transcriptome sequences. The results of this study can provide valuable information on growth- and sex-related genes and facilitate further exploration of the molecular mechanism of sexual growth dimorphism.


Assuntos
Perfilação da Expressão Gênica , Transcriptoma , Animais , Feminino , Masculino , Transcriptoma/genética , Anotação de Sequência Molecular , Peixes/genética
7.
Comput Methods Programs Biomed ; 226: 107110, 2022 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-36167001

RESUMO

OBJECTIVE: The femur is a typical human long bone with an irregular spatial structure. Femoral fractures are the most common occurrence in middle-aged and older adults. The structure of human bone tissue is very complex, and there are significant differences between individuals. Segmenting bone tissue is a challenging task and of great practical significance. METHODS: Our research is based on segmenting and the three-dimensional reconstruction of femoral images using X-ray imaging. The currently commonly used two-dimensional fully convolutional network Unet has the problem of ignoring spatial position information and losing too much feature information. The commonly used three-dimensional fully convolutional network 3D Unet has the problem of ignoring spatial position information and losing too much feature information. For the problem of many model parameters, we proposes a two-stage network segmentation model composed of 3D-DMFNet and 3D-ResUnet networks and trains the network in stages to segment the femur. One stage is used to detect the coarse segmentation of the femur range, and one stage is used for the fine segmentation of the femur so that the training speed is fast and the segmentation accuracy is moderate, which is suitable for detecting the femur range. RESULTS: The experimental dataset used in this paper is from The Second Affiliated Hospital of Fujian Medical University, which consists of 30 sets of femur X-ray images. The experiment compares the accuracy and loss value of Unet and the two-stage convolutional network. The image shows that the two-stage convolutional network has higher accuracy. At the same time, this paper shows the effect of the two-stage coarse segmentation and fine segmentation of medical images. Subsequently, this paper applies the model to practice and obtains the model's Dice, Sensitivity, Specificity and Pixel Accuracy values. After comparative analysis, the experimental results show that the two-stage network segmentation model composed of 3D-DMFNet and 3D-ResUnet network designed in this paper has higher accuracy, intuitiveness, and more application value than traditional image segmentation algorithms. CONCLUSION: With the continuous application of X-ray images in clinical diagnosis using femoral images, the method in this paper is expected to become a diagnostic tool that can effectively improve the accuracy and loss of femoral image segmentation and the three-dimensional reconstruction.


Assuntos
Processamento de Imagem Assistida por Computador , Redes Neurais de Computação , Pessoa de Meia-Idade , Humanos , Idoso , Processamento de Imagem Assistida por Computador/métodos , Imageamento Tridimensional/métodos , Algoritmos , Fêmur/diagnóstico por imagem
8.
Genes (Basel) ; 13(8)2022 08 01.
Artigo em Inglês | MEDLINE | ID: mdl-36011287

RESUMO

The capsalid monogeneans are important pathogens that generally infect marine fishes and have a substantial impact on fish welfare in aquaculture systems worldwide. However, the current mitogenome information on capsalids has received little attention, limiting the understanding of their evolution and phylogenetic relationships with other monogeneans. This paper reports the complete mitochondrial genomes of Capsala katsuwoni and Capsala martinieri for the first time, which we obtained using a next-generation sequencing method. The mitogenomes of C. katsuwoni and C. martinieri are 13,265 and 13,984 bp in length, respectively. Both species contain the typical 12 protein-coding genes, 2 ribosomal RNA genes, 22 transfer RNA genes, and a control region. The genome compositions show a moderate A+T bias (66.5% and 63.9% for C. katsuwoni and C. martinieri, respectively) and exhibit a negative AT skew but a positive GC skew in both species. One gene block rearrangement was found in C. katsuwoni in comparison with other capsalid species. Instead of being basal to the Gyrodactylidea and Dactylogyridea or being clustered with Dactylogyridea, all species of Capsalidea are grouped into a monophyletic clade. Our results clarify the gene rearrangement process and evolutionary status of Capsalidae and lay a foundation for further phylogenetic studies of monogeneans.


Assuntos
Genoma Mitocondrial , Platelmintos , Trematódeos , Animais , Peixes/genética , Genoma Mitocondrial/genética , Filogenia , Platelmintos/genética , RNA de Transferência/genética , Trematódeos/genética
9.
Artigo em Inglês | MEDLINE | ID: mdl-36011836

RESUMO

Thirty samples of surface sediments (0-5 cm) from the northern Beibu Gulf were analyzed to determine the spatial distribution, potential risks and sources of six heavy metals (Cr, Cu, Zn, As, Cd and Pb). The concentrations (mg/kg, dw) of Cr, Cu, Zn, As, Cd and Pb were 15.38 ± 6.06, 6.54 ± 3.23, 41.86 ± 17.03, 6.92 ± 2.75, 0.04 ± 0.02 and 17.13 ± 6.38, respectively. Higher levels of Cr, Cu, Cd and Zn were observed in the western part of the study area. According to the potential ecological risk indexes and sediment quality guidelines, the measured metals were assessed at low contamination levels, with Pb posing the largest ecological risks. The results of positive matrix factorization (PMF) indicated that Cr and Zn mainly originated from natural geological background sources, while Cu, As, Cd and Pb were influenced by anthropogenic sources such as atmospheric deposition and anthropogenic activities. These three sources contributed 60.4%, 28.1% and 11.5% of the heavy metals, respectively. In addition, further research should be conducted focusing on the general relationships between As and various controls in sediments of the northern Beibu Gulf.


Assuntos
Metais Pesados , Poluentes Químicos da Água , Cádmio , China , Monitoramento Ambiental , Sedimentos Geológicos , Chumbo , Metais Pesados/análise , Medição de Risco , Poluentes Químicos da Água/análise
10.
Fish Shellfish Immunol ; 128: 260-268, 2022 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-35934240

RESUMO

Diplothylacus sinensis is reported as an intriguing parasitic barnacle that can negatively affect the growth, molting, reproduction in several commercially important portunid crabs. To better understand the molecular mechanisms of host-parasite interactions, we characterized the gene expression profiles from the healthy and D. sinensis infected Portunus sanguinolentus by high-through sequence method. Totally, the transcriptomic analysis generated 52, 266, 600 and 51, 629, 604 high quality reads from the infected and control groups, respectively. The clean reads were assembled to 90,740 and 69,314 unigenes, with the average length of 760 bp and 709 bp, respectively. The expression analysis showed that 18,959 genes were significantly changed by the parasitism of D. sinensis, including 4769 activated genes and 14,190 suppressed genes. The differentially expressed genes were categorized into 258 KEGG pathways and 647 GO terms. The GO analysis mapped 13 DEGs related to immune system process and 32 DEGs related to immune response, respectively, suggesting a potential alteration of transcriptional expression patterns in complement cascades of P. sanguinolentus. Additionally, 4 representative molting-related genes were down-regulated in parasitized group, indicating D. sinensis infection appeared to suppress the producing of ecdysteroid hormones. In conclusion, the present study improves our understanding on parasite-host interaction mechanisms, which focuses the function of Ecdysone receptor, Toll-like receptor and cytokine receptor of crustacean crabs infestation with rhizocephalan parasites.


Assuntos
Braquiúros , Parasitos , Thoracica , Animais , Braquiúros/genética , Ecdisona , Ecdisteroides , Perfilação da Expressão Gênica , Masculino , Receptores de Citocinas/genética , Natação , Thoracica/genética , Transcriptoma
11.
Bioengineered ; 13(5): 13680-13688, 2022 05.
Artigo em Inglês | MEDLINE | ID: mdl-35706414

RESUMO

Long non-coding RNA (lncRNA) plasmacytoma variant translocation 1 (PVT1) and growth arrest specific 5 (GAS5) have opposite functions in the apoptosis of chondrocytes, which are involved in the pathogenesis of osteoarthritis (OA). The opposite roles of PVT1 and GAS5 in OA may indicate the existence of crosstalk between them in OA. This study aimed to explore the possible interaction between PVT1 and GAS5 in OA. Accumulation of PVT1 and GAS5 in OA and control synovial fluid samples was measured by RT-qPCR. The interaction between PVT1 and GAS5 in chondrocytes was explored by overexpression experiments. Dual-luciferase reporter assay was performed to analyze the binding of PVT1 and GAS5 to each other's promoter regions. Regulatory roles of PVT1 and GAS5 in the apoptosis of chondrocytes were studied with cell apoptosis assay. PVT1 was upregulated in OA, and GAS5 was downregulated in OA. An inverse correlation between PVT1 and GAS5 was observed across OA samples. Under lipopolysaccharides (LPS) treatment, PVT1 was upregulated and GAS5 was downregulated. Interestingly, PVT1 and GAS5 overexpression downregulated each other in chondrocytes. Cell apoptosis analysis showed that PVT1 overexpression promoted cell apoptosis, while GAS5 overexpression suppressed cell apoptosis induced by LPS. Co-transfection of PVT1 and GAS5 failed to significantly affect cell apoptosis. PVT1 and GAS5 directly bound to each other's promoter regions. Our study characterized the interaction between PVT1 and GAS5 in OA. Their interaction regulated the apoptosis of chondrocytes, which play a critical role in OA. PVT1 and GAS5 may form a negative feedback loop in OA.


Assuntos
MicroRNAs , Osteoartrite , Plasmocitoma , RNA Longo não Codificante , Apoptose/genética , Condrócitos/metabolismo , Humanos , Lipopolissacarídeos/metabolismo , MicroRNAs/metabolismo , Osteoartrite/genética , Osteoartrite/metabolismo , Plasmocitoma/complicações , Plasmocitoma/metabolismo , Plasmocitoma/patologia , RNA Longo não Codificante/genética , RNA Longo não Codificante/metabolismo
12.
BMC Musculoskelet Disord ; 23(1): 340, 2022 Apr 09.
Artigo em Inglês | MEDLINE | ID: mdl-35397519

RESUMO

BACKGROUND: Macrophages are one of the important cells in immune system. In this article, we aim to explore the regulatory role of miR-455-3p on proliferation and osteoblast differentiation of RAW264.7 cells. METHODS: Expression levels of genes and proteins in cells were tested via qRT-PCR and western blot. The targeted correlation between miR-455-3p and PTEN was identified by luciferase analysis. MTT assay and flow cytometry were applied to detect the proliferation and apoptosis of cells. Osteoclastogenesis was completed by stimulating RAW 264.7 cells with RANKL. Tartrate-resistant acid phosphatase (TRAP) activity in different groups of cells were assessed. RESULTS: Firstly, we determined that up-regulation of miR-455-3p promoted the proliferation and inhibited apoptosis of RAW 264.7 cells. MiR-455-3p deficiency played opposite effect in RAW 264.7 cells. Additionally, osteoclastogenesis-related factors (TRAP, CTSK and NFATc1) expression levels were remarkably up-regulated in miR-455-3p-mimic group of RAW264.7 cells treated with RANKL, but decreased in inhibitor group. Luciferase assay proved that miR-455-3p targeted PTEN. We took a further step and found overexpression of PTEN significantly inhibited the increased proliferation and osteoblast differentiation of RAW264.7 cells induced by miR-455-3p. CONCLUSIONS: Our findings supported basic to explore the molecular mechanism of proliferation and osteoblast differentiation of RAW264.7 cells.


Assuntos
MicroRNAs , Osteoclastos , Osteogênese , PTEN Fosfo-Hidrolase , Animais , Proliferação de Células/genética , Camundongos , MicroRNAs/metabolismo , Osteoclastos/citologia , Osteogênese/genética , PTEN Fosfo-Hidrolase/genética , PTEN Fosfo-Hidrolase/metabolismo , Células RAW 264.7
13.
Mitochondrial DNA B Resour ; 7(1): 277-279, 2022.
Artigo em Inglês | MEDLINE | ID: mdl-35097215

RESUMO

The complete mitochondrial genome of the Cephalopholis urodeta (Serranidae: Epinephelinae) was sequenced by next-generation sequencing method on the basis of one female specimen collected from coral reef areas at the Mischief Reef, South China Sea. The mitogenome is 16,593 bp in length, including 13 protein-coding genes, 22 tRNA genes, two rRNA genes and a D-loop region. The overall content of A + T is 55.66%, which is significantly higher than the C + G content (44.34%). Among four bases, C shows the lowest frequency (15.99%). Phylogenetic tree based on the 13 protein-coding genes was constructed for analyzing the position of C. urodeta. The results provide useful insights into further studies on population genetics and phylogenetics of groupers.

14.
Mitochondrial DNA B Resour ; 7(1): 180-181, 2022.
Artigo em Inglês | MEDLINE | ID: mdl-35028412

RESUMO

In the present study, the complete mitogenome of Cephaloscyllium fasciatum has been sequenced and assembled. The complete mitochondrial genome is 16,509 bp in length and contains 37 mitochondrial genes and a control region as other fishes. The nucleotide composition of C. fasciatum mitogenome showed an anti-G bias and an excess of AT content. Furthermore, maximum-likelihood phylogenetic tree was constructed based on 13 protein-coding genes of C. fasciatum and other 15 sharks. This work will provide molecular data for studies on phylogeny and evolution in the family Scyliorhinidae.

15.
Mar Genomics ; 61: 100910, 2022 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-34673307

RESUMO

In this study, we generated the transcriptome of Muraenesox cinereus from four combined tissues (muscle, sexual, liver and heart) using high-seq sequencing technology. De novo assembly was performed using Trinity software and a total of 62,125,296 high-quality clean reads were assembled and clustered into 75,862 unigene with an N50 of 2034 nt. After annotation, 43,157 unigenes had significant hit in Nr database. And then, 24,510 unigenes were annotated into three GO categories: biological processes, cellular components, and molecular functions. Moreover, 33,032 unigenes were mapped 25 different clusters of eukaryotic proteins. Furthermore, we predicted the structure of all unigenes using HMMER and MISA software, respectively. The result showed that a total of 33,183 nucleotide sequences of coding regions (direction of the sequences is 5'- > 3') were confirmed to the protein database and a total of 29,487 simple sequence repeats (SSR) were identified. The whole transcriptome is an important foundation for future genomic research on the M. cinereus, it could provide comprehensively understanding and further characterizations of transcriptomes of non-model organisms.


Assuntos
Repetições de Microssatélites , Transcriptoma , Genômica , Anotação de Sequência Molecular , Fases de Leitura Aberta
16.
J Healthc Eng ; 2021: 3219337, 2021.
Artigo em Inglês | MEDLINE | ID: mdl-34925731

RESUMO

In the process of knee replacement surgery, the use of tourniquet technology for hemostasis is the most common method. But the adverse reactions of tourniquets in knee replacement surgery have become more prominent in recent years. More and more scholars have begun to advocate the optimization of the use of tourniquet technology, thereby controlling the use of tourniquet technology. In this study, 125 patient cases were randomly divided into four experimental groups for comparative analysis. The two sets of variables are whether to use tourniquet during surgery and use intravenous analgesia or nerve block analgesia. Studies have shown that when using a tourniquet for knee replacement surgery, the chance of hidden blood loss increases after use. The tourniquet was not used during the operation, the patient's thighs were swollen, and postoperative pain was reduced. Compared with intravenous analgesia, knee joint replacement with uncontrolled tourniquet combined with femoral nerve block has a better analgesic effect and can effectively relieve pain after knee replacement. Therefore, under the method of controlled hypotension combined with femoral nerve block, TKA surgery without using tourniquet technology is more conducive to early health recovery and pain relief after TKA surgery, as well as functional exercise and knee joint recovery during postoperative recovery.


Assuntos
Artroplastia do Joelho , Hipotensão Controlada , Nervo Femoral , Humanos , Dor Pós-Operatória , Torniquetes
17.
Front Cell Dev Biol ; 9: 696878, 2021.
Artigo em Inglês | MEDLINE | ID: mdl-34336848

RESUMO

Accumulating evidence has supported that osteosarcoma is heterogeneous, and several subtypes have been identified based on genomic profiling. Immunotherapy is revolutionizing cancer treatment and is a promising therapeutic strategy. In contrast, few studies have identified osteosarcoma classification based on immune biosignatures, which offer the optimal stratification of individuals befitting immunotherapy. Here, we classified osteosarcoma into two clusters: immunity high and immunity low using the single-sample gene-set enrichment analysis and unsupervised hierarchical clustering. Immunity_H subtype was associated with high immune cells infiltration, a favorable prognosis, benefit to immunotherapy, high human leukocyte antigen gene expression, and activated immune signal pathway indicating an immune-hot phenotype. On the contrary, the Immunity_L subtype was correlated with low immune cell infiltration, poor prognosis, and cancer-related pathway, indicating an immune-cold phenotype. We also identified TYROBP as a key immunoregulatory gene associated with CD8+ T cell infiltration by multiplex immunohistochemistry. Finally, we established an immune-related prognostic model that predicted the survival time of osteosarcoma. In conclusion, we established a new classification system of osteosarcoma based on immune signatures and identified TYROBP as a key immunoregulatory gene. This stratification had significant clinical outcomes for estimating prognosis, as well as the immunotherapy of osteosarcoma patients.

18.
Am J Transl Res ; 12(11): 7326-7339, 2020.
Artigo em Inglês | MEDLINE | ID: mdl-33312370

RESUMO

BACKGROUND: Single-cell RNA sequencing (scRNA-seq) was recently adopted for exploring molecular programmes and lineage progression patterns of pathogenesis of important diseases. In this study, scRNA-seq was used to identify potential markers for chondrocytes in osteoarthritis (OA) and to explore the function of different types of chondrocytes in OA. METHODS: Here we aimed to identify the biomarkers and differentiation of chondrocyte by Single-cell RNA seq analysis. GeneOntology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis were used to identify the function of candidate marker genes in chondrocytes. Protein-protein interaction (PPI) network was constructed to find the hub genes in 3 types of chondrocyte respectively. We also used qRT-PCR to detect the expression level of the candidate marker genes in different types of chondrocyte. RESULTS: In this study, we characterized the single-cell expression profiling of 480 chondrocyte samples and found hypertrophic chondrocyte (HTC), homeostatic chondrocyte (HomC) and fibrocartilage chondrocyte (FC) respectively. The results of GO and KEGG analysis showed the candidate marker genes made specific function in these chondrocytes to regulate the development of OAs respectively. We further revealed the differential expression of top 10 marker genes in 3 types of chondrocyte. The marker genes of HTC and FC were mainly expressed in their cell subset respectively. The marker genes of HomC did not have obviously differential expression among different types of chondrocyte. Last, we predicted the key genes in each cell subset. CD44, JUN and FN1 were predicted tightly related to the proliferation and differentiation of chondrocytes in OAs and could be regarded as biomarkers to estimate the development of OA. CONCLUSION: Our results provide new insights into exploring the roles of different types of chondrocyte in OA. The biomarkers of chondrocyte were also valuable for estimating OA progression.

19.
Sensors (Basel) ; 19(23)2019 Nov 21.
Artigo em Inglês | MEDLINE | ID: mdl-31766454

RESUMO

This paper addresses the difficult problem of measuring the attitude of a high-spinning projectile and presents a novel method for estimating the pitch and yaw angles of the projectile in flight. The method is based on analysis of the external moment of the rotating projectile during flight and theoretical derivations obtained from the dynamics' equations. First, the principle of zero-crossing method is introduced, which explains the process of geomagnetic azimuth and roll measurements by the non-orthogonal geomagnetic sensor combination. Then, the dynamics constraint equations between the Euler angles and flight-path angle, trajectory deflection angle of the projectile are derived using the dynamics equations of the projectile rotating around the centroid, and analysis of the flight characteristics of the projectile in stable flight. Next, the spatial orientation relationship between pitch, yaw angles and magnetic azimuth is established based on the physical principle of geomagnetic azimuth. Finally, the pitch and yaw angles are estimated using the unscented Kalman filter (UKF), with the dynamics constraint equations serving as the driving equations. In the UKF prediction stage, the Runge-Kutta method is used to discretize the state equation that improves the prediction accuracy. Simulation results show that the proposed method can be used to accurately calculate the pitch and yaw angles, and results of experimental data processing also verify the feasibility of the proposed method for real-world applications.

20.
Sensors (Basel) ; 19(7)2019 Mar 28.
Artigo em Inglês | MEDLINE | ID: mdl-30925780

RESUMO

The implementation of IP technology in wireless sensor networks has promoted the development of many smart scenarios. To enhance secure access in IP-enabled wireless sensor networks, access control to sensor nodes is a necessary process. However, access control currently faces two challenges, feasibility and preservation of user access privacy. In this paper, we propose eHAPAC, a novel privacy-preserving access control model for IP-enabled wireless sensor networks. The contributions of our paper include three parts. First, this paper integrates the Hidra access control protocol and APAC privacy-preserving model, addressing the issue of privacy-preserving access control in resource-constrained devices. Second, this paper proposes an enhanced Hidra protocol to implement the unlinkability of protocol message exchanges. Third, to solve the problem of third party credibility, this paper improves the group signature-based APAC model and utilizes blockchain technology to manage the storage and publication of public group signature keys. Security analysis and performance evaluation prove that our protocol is secure and effective.

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