Configurational and conformational analysis of chiral molecules using IR and VCD spectroscopies: spiropentylcarboxylic acid methyl ester and spiropentyl acetate.

The chiral monosubstituted derivatives of spiropentane, spiropentylcarboxylic acid methyl ester, 1, and spiropentyl acetate, 2, have been synthesized in optically active form. Configurational and conformational analysis of 1 and 2 has been carried out using infrared (IR) and vibrational circular dichroism (VCD) spectroscopies. Analysis of the experimental IR and VCD spectra has been carried out using ab initio density functional theory (DFT). For both 1 and 2, DFT predicts two populated conformations. Comparison to experiment of the conformationally averaged IR and VCD spectra of 1 and 2, predicted using DFT, provides unequivocal evidence of the predicted conformations and yields the absolute configurations R(-)/S(+) for 1 and R(+)/S(-) for 2. These absolute configurations are consistent with the R(-)/S(+) absolute configuration of spiropentylcarboxylic acid, assigned previously via X-ray crystallography of its alpha-phenylethylammonium salt.

Chiral diamines 4: a computational study of the enantioselective deprotonation of Boc-pyrrolidine with an alkyllithium in the presence of a chiral diamine.

The enantioselective deprotonation of N-Boc-pyrrolidine (1) with i-PrLi-(-)-sparteine has been studied at theoretical levels up through B3P86/6-31G. Four low-energy intermediate complexes involving i-PrLi-(-)-sparteine and 1 were located via geometry optimizations; two of these complexes would lead to abstraction of the pro-S hydrogen from 1, and the other two complexes would lead to loss of the pro-R hydrogen. The lowest-energy intermediate complex was found to lead to loss of the pro-S hydrogen as observed experimentally. Transition states for the deprotonations were located using the synchronous transit-guided quasi-Newton method. The calculated activation enthalpy for transfer of the pro-S hydrogen within the lowest-energy intermediate complex, 10.8 kcal/mol, is reasonable for a reaction that occurs at a relatively low temperature, and the calculated kinetic hydrogen isotope effect is in agreement with experimental data. The lower enantioselectivity observed experimentally for deprotonation of 1 using t-BuLi-(-)-sparteine is attributed to a transition-state effect due to increased steric interaction engendered by the bulky t-BuLi. Replacement of the tert-butoxycarbonyl group in 1 by a methoxycarbonyl is predicted to result in a slower deprotonation with somewhat decreased enantioselectivity. Asymmetric deprotonation of 1 using i-PrLi in combination with the C(2)-symmetric diamine, (S,S)-1,2-bis(N,N-dimethylamino)cyclohexane, was calculated to be much less selective than is the deprotonation mediated by (-)-sparteine as observed experimentally. The relative energies of the intermediate complexes were fairly well-reproduced by ONIUM calculations in which the sparteine ligand less its nitrogen atoms was treated by molecular mechanics and the remainder of the complex was treated by quantum mechanics.

Solvent effects on the thioamide rotational barrier: an experimental and theoretical study.

The solvent effect on the C-N rotational barriers of N,N-dimethylthioformamide (DMTF) and N,N-dimethylthioacetamide (DMTA) has been investigated using ab initio theory and NMR spectroscopy. Selective inversion recovery NMR experiments were used to measure rotational barriers in a series of solvents. These data are compared to ab initio results at the G2(MP2) theoretical level. The latter are corrected for large amplitude vibrational motions to give differences in free energy. The calculated gas phase barriers are in very good agreement with the experimental values. Solvation effects were calculated using reaction field theory. This approach has been found to give barriers that are in good agreement with experiment for many aprotic, nonaromatic solvents that do not engage in specific interactions with the solute molecules. The calculated solution-phase barriers for the thioamides using the above solvents are also in good agreement with the observed barriers. The solvent effect on the thioamide rotational barrier is larger than that for the amides because the thioamides have a larger ground-state dipole moment, and there is a larger change in dipole moment with increasing solvent polarity. The transition-state dipole moments for the amides and thioamides are relatively similar. The origin of the C-N rotational barrier and its relation to the concept of amide "resonance" is examined.

Solvent effects on methyl transfer reactions. 2. The reaction of amines with trimethylsulfonium salts.

The reaction of ammonia and pyridine with trimethylsulfonium ion has been studied in gas phase and solution. Density functional theory at the B3LYP/6-31+G level was used to describe the energy changes along the reaction coordinate in the gas phase, and the self-consistent isodensity polarizable continuum model (SCI-PCM) was used to calculate the effect of cyclohexane and dimethyl sulfoxide as the solvent on the energy changes. The effect of water as the solvent was studied using the Monte Carlo free energy perturbation method. The reaction with both ammonia and pyridine follows a similar rather convoluted path in gas phase, with the formation of several reaction complexes before and after the formation of the transition state. All the species found in gas phase persist in cyclohexane, yielding a reaction path very similar to that in gas phase but with significant differences in the relative energy of the critical points. In DMSO, the energy profile is greatly simplified by the disappearance of several of the species found in gas phase and in cyclohexane. The activation free energy increases with the polarity of the solvent in both reactions. Increasing the polarity of the solvent also increases the exothermicity of the reaction of trimethylsulfonium ion with ammonia and reduces it in the reaction with pyridine. In water, the free energy profile follows the same trend as found for DMSO, and free energy of activation is calculated to be larger by about 2-3 kcal/mol. This is in good agreement with an experimental measurement of the effect of solvent on the rate of reaction.

19F NMR chemical shifts. 1. Aliphatic fluorides.

The (19)F NMR shielding for the alkyl fluorides from methyl fluoride to tert-butyl fluoride has been calculated using IGAIM and has been separated into the contribution from each of the molecular orbitals. The relatively large change in fluorine shielding, in contrast to the adjacent carbon, was found to be due to the tensor components normal to the C-F bond axis. As the number of adjacent p-orbitals increases, the lone-pair p orbitals at fluorine become involved with MOs using these orbitals. The increase in the number of occupied orbitals associated with the fluorine leads to increased opportunities for mixing with virtual orbitals and to the increase in paramagnetic deshielding. The same pattern is seen on going from acetylene to 2-tert-butylacetylene and is also seen in the methyl (13)C shielding in the series ethane, propane, isobutane, and neopentane. The fluorine shielding in the series of fluoromethanes also decreases with increasing fluorine substitution. With carbon tetrafluoride, the decreased shielding arises from the highest occupied MO, which is a nonbonding linear combination of pure p functions at the fluorines.

Solvation and structural effects on the stability of 10-X-2 ate-complexes: a computational study.

The structures and energies of a variety of 10-X-2 ate-complexes derived from reaction of alkyllithiums and aryllithiums with the corresponding organohalides have been studied at the B3LYP/6-31+2G** theoretical level. The results of the calculations, which are in good agreement with the available experimental data, indicate that diaryl ate-complexes are more stable than their dialkyl counterparts. Fluorine substitution was found to confer substantial stability to both diaryl and dialkyl ate-complexes, and the calculations suggest that perfluoro dialkyl 10-X-2 ate-complexes should be experimentally observable species. One of the most important factors contributing to stability of a 10-X-2 ate-complex is removal of the formally cationic lithium from the vicinity of the ate-anion via coordination with a Lewis basic solvent.

Synthesis and Chemistry of Bicyclo[4.1.0]hept-1,6-ene.

Bicyclo[4.1.0]hept-1,6-ene has been generated by elimination of 1-chloro-2-(trimethysilyl)bicyclo[4.1.0]heptane in the gas phase over solid fluoride at 25 degrees C. The cyclopropene dimerizes by a rapid ene reaction forming two diastereomeric cyclopropenes. In tetrahydrofuran or chloroform the ene dimers couple to form a single crystalline triene tetramer, whereas a mixture of tricyclohexane tetramers is formed when the neat dimers are allowed to warm to room temperature. Oxidation by dimethyldioxirane or dioxygen gives carbonyl products. Quantum mechanical calculations yielded an increase in strain of approximately 17 kcal/mol over that for 1,2-dimethylcyclopropene. The potential enegy barrier to flexing (folding) along the fused double bond of bicyclo[4.1.0]hept-1,6-ene is only approximately 1 kcal/mol at the highest level of theory investigated.

The response of electrons to structural changes.

The properties of a molecule are determined by the distribution of its electrons. This distribution can be described by the charge density, which is readily obtained from the wave functions derived by ab initio molecular orbital calculations. The charge density may be analyzed in a number of different fashions to give information about the effects of substituents, structural changes, and electronic excitation on the properties of molecules; one common procedure makes use of projection density or charge difference plots. Charge density also may be partitioned among atoms, and by numerical integration over appropriate volume elements one may obtain atomic charges, dipoles, kinetic energies, and other properties of the atoms in a molecule. Many chemical phenomena have been analyzed in terms of charge densities.

Effect of basis set on electron populations calculated by using Bader's criterion for partitioning electron density between atoms.

The effect of basis set on Bader's criterion for partitioning electron density between atoms is examined. The major effect is on the position of minimum electron density along the bond of interest. The 6-31G(**) basis leads to the more satisfactory results. The effect of including electron correlation was examined via the use of generalized valence bond wavefunctions. The change in the electron populations was small. The partitioning of electron density is useful in examining the way in which substituents interact with hydrocarbon groups.