Spontaneous movement of a retrotransposon generated genic dominant male sterility providing a useful tool for rice breeding.

Male sterility in plants provides valuable breeding tools in germplasm innovation and hybrid crop production. However, genetic resources for dominant genic male sterility, which hold great promise to facilitate breeding processes, are extremely rare in natural germplasm. Here we characterized the Sanming Dominant Genic Male Sterility in rice and identified the gene SDGMS using a map-based cloning approach. We found that spontaneous movement of a 1978-bp long terminal repeat (LTR) retrotransposon into the promoter region of the SDGMS gene activates its expression in anther tapetum, which causes abnormal programmed cell death of tapetal cells resulting in dominant male sterility. SDGMS encodes a ribosome inactivating protein showing N-glycosidase activity. The activation of SDGMS triggers transcription reprogramming of genes responsive to biotic stress leading to a hypersensitive response which causes sterility. The results demonstrate that an ectopic gene activation by transposon movement can give birth to a novel trait which enriches phenotypic diversity with practical utility.

Bract suppression regulated by the miR156/529-SPLs-NL1-PLA1 module is required for the transition from vegetative to reproductive branching in rice.

Reproductive transition of grasses is characterized by switching the pattern of lateral branches, featuring the suppression of outgrowth of the subtending leaves (bracts) and rapid formation of higher-order branches in the inflorescence (panicle). However, the molecular mechanisms underlying such changes remain largely unknown. Here, we show that bract suppression is required for the reproductive branching in rice. We identified a pathway involving the intrinsic time ruler microRNA156/529, their targets SQUAMOSA PROMOTER BINDING PROTEIN LIKE (SPL) genes, NECK LEAF1 (NL1), and PLASTOCHRON1 (PLA1), which regulates the bract outgrowth and thus affects the pattern switch between vegetative and reproductive branching. Suppression of the bract results in global reprogramming of transcriptome and chromatin accessibility following the reproductive transition, while these processes are largely dysregulated in the mutants of these genes. These discoveries contribute to our understanding of the dynamic plant architecture and provide novel insights for improving crop yields.

Large-Scale Bio-Inspired Flexible Antireflective Film with Scale-Insensitivity Arrays.

Natural creatures can always provide perfect strategies for excellent antireflection (AR), which is valuable for photovoltaic industry, optical devices, and flexible displays. However, limited by precision, it is still difficult to guarantee the consistency between the artificial structures and the original biological structures. Here, a novel large-scale flexible AR film is inspired by the cicada wings and successfully fabricated with a recycled template. On the one hand, the adjustable structures on porous templates make it possible to optimize the design of AR structure parameters toward the practical demand. On the other hand, it breaks the limitation of the biological organism size, accomplishing the replication of AR nanostructure units in a large scale. Interestingly, even if the film is covered by enlarged dome cone arrays, it still maintains almost perfect AR property, achieving excellent scale-insensitivity AR performance. This work numerically and experimentally investigates its scale-insensitivity AR performance in detail. Compared with subwavelength nanocones, enlarged cones change the original optical behaviors, and the proportion of transmitted light is reduced while scattering and absorption increase. Based on this, these bio-inspired scale-insensitivity AR arrays could be used in flexible displays, photothermic conversion, solar cells, and so on.

Broader-Band and Flexible Antireflective Films with the Window-like Structures Inspired by the Backside of Butterfly Wing Scales.

Antireflective performance is critical for most optical devices, such as the efficient solar energy utilization in photovoltaic cells of an aerospace craft and optical displays of scientific precise equipment. Therein, outstanding broad-band antireflection is one of the most crucial properties for antireflection films (ARFs). Unfortunately, it is still a challenging work to realize perfect "broader-band" antireflection because both the low refractive indices materials and time-consuming nanotexturing technologies are required in the fabricating process. Even in this case, a broader-band and flexible ARF with hierarchical structures is successfully developed, which is inspired by butterfly wing scales. First, the butterfly wings surface is treated with acid and stuck on a clean glass. Now, all the scales on the wings will form a strong adhesion with the glass substrate. Then, the wings are removed and the scales are left on the glass slide. Now the backside of scales is facing outward, the backside structures of the scales are coincidentally used as the template. Finally, the structure is replicated and the ARF with a controllable thickness is successfully fabricated by rotating PDMS on the biological template. In this work, the bionic ARFs realize the transmission of nearly 90% and more than 90% in the visible light and infrared region. It enhanced transmission to 13% under standard illumination compared with flat PDMS films of the same thickness. Furthermore, the ARF is flexible enough that it could bend nearly 180° to meet the special antireflection requirements in some extreme conditions. It is expected that this bioinspired AR film could revolutionize the technologies of broader-band antireflective materials and impact numerous applications from glass displays to optoelectronic devices.

Artificial Selection in Domestication and Breeding Prevents Speciation in Rice.

Speciation has long been regarded as an irreversible process once the reproductive barriers had been established. However, unlike in natural populations, artificial selection might either accelerate or prevent speciation processes in domesticated species. Asian cultivated rice is a target crop for both domestication and artificial breeding; it contains two subspecies of indica and japonica, which usually produce sterile inter-subspecific hybrids due to reproductive barriers. In this study, we constructed the evolutionary trajectory of a reproductive isolation system S5, which regulates fertility in indica-japonica hybrids via three adjacent genes, based on the data of 606 accessions including two cultivated and 11 wild rice species. Although hybrid sterility haplotypes at S5 lead to establishment of a killer-protector reproductive barrier, origin of wide-compatibility haplotypes by complex hybridization and recombination provides an opposing force to reproductive isolation and thus prevents speciation during domestication. Analysis in a diallel set of 209 crosses involving 21 parents showed that the wide-compatibility genotypes largely rescued fertility of indica-japonica hybrids, indicating that the wide-compatibility gene would enable gene flow to maintain species coherence. This counteracting system indicates that combined effects of natural evolution and artificial selection may result in reversible processes of speciation in rice, which may also have implications for genetic improvement of rice.

Patterns of genome-wide allele-specific expression in hybrid rice and the implications on the genetic basis of heterosis.

Utilization of heterosis has greatly increased the productivity of many crops worldwide. Although tremendous progress has been made in characterizing the genetic basis of heterosis using genomic technologies, molecular mechanisms underlying the genetic components are much less understood. Allele-specific expression (ASE), or imbalance between the expression levels of two parental alleles in the hybrid, has been suggested as a mechanism of heterosis. Here, we performed a genome-wide analysis of ASE by comparing the read ratios of the parental alleles in RNA-sequencing data of an elite rice hybrid and its parents using three tissues from plants grown under four conditions. The analysis identified a total of 3,270 genes showing ASE (ASEGs) in various ways, which can be classified into two patterns: consistent ASEGs such that the ASE was biased toward one parental allele in all tissues/conditions, and inconsistent ASEGs such that ASE was found in some but not all tissues/conditions, including direction-shifting ASEGs in which the ASE was biased toward one parental allele in some tissues/conditions while toward the other parental allele in other tissues/conditions. The results suggested that these patterns may have distinct implications in the genetic basis of heterosis: The consistent ASEGs may cause partial to full dominance effects on the traits that they regulate, and direction-shifting ASEGs may cause overdominance. We also showed that ASEGs were significantly enriched in genomic regions that were differentially selected during rice breeding. These ASEGs provide an index of the genes for future pursuit of the genetic and molecular mechanism of heterosis.