Genomic Sequence Resource of Talaromyces albobiverticillius, the Causative Pathogen of Pomegranate Pulp Rot Disease.

Talaromyces albobiverticillius, a prominent pathogen responsible for pomegranate pulp rot disease, inflicts significant damage on Punica granatum L. Besides its pathogenicity, this fungus possesses the potential to produce substantial amounts of red pigments, making it promising for industrial applications. This study presents the genome annotation of T. albobiverticillius field strain Tp-2, isolated from pomegranates. The genome assembly, generated through a combination of Oxford Nanopore and Illumina sequencing reads, yielded a high-quality assembly with 14 contigs, featuring an N50 length of 4,594,200 bp. The complete genome of strain Tp-2 spans 38,354,882 bp, with a GC content of 45.78%. Importantly, the assembly exhibits remarkable integrity, with 98.3% of complete Benchmarking Universal Single-Copy Orthologs validating genome completeness. Genome prediction analysis reveals the presence of 10,380 protein-coding genes. To our knowledge, this study is the first report on the genome sequence of T. albobiverticillius, offering valuable insights into its genetic variation and molecular mechanisms of pigment production.

Principles and applications of green fluorescent protein-based biosensors: a mini-review.

Green fluorescent proteins (GFPs) are useful and essential biomolecules that have revolutionized biosensor research. Researchers have extensively utilized GFPs for designing fluorescence biosensors due to their intrinsic fluorescence, high stability, and ability to undergo permutation or mutation. This review provides a concise summary of recent advancements in developing GFP-based biosensors. The construction approaches for GFP-based biosensors can be categorized into four types: (1) single GFP-based biosensors; (2) fluorescence resonance energy transfer-based biosensors; (3) GFP-based split biosensors; and (4) GFP chromophore analogy-based biosensors. We highlight the applications of these sensors in biomolecule detection and life sciences, while also sharing personal insights into the challenges associated with GFP-based biosensors and proposing future research directions.

Leaf Spot Disease on Punica granatum Caused by Alternaria alternata in China.

Pomegranate (Punica granatum L.), which is native to central Asia, is considered as one of the most renowned commercial fruit trees in the world. The planting area in China is roughly 120 thousand hectares. In June 2020, symptoms of leaf spot on P. granatum appeared in Nanyang City (32º40´34˝N, 111º44´20˝E), Henan Province, with an incidence rate of 35% in several 3.3-hectare orchards. Initially, the lesions showed as round or subrounded brown spots on affected leaves. The spots then progressively developed into irregular lesions with distinct yellow halos surrounding them. Parts of the lesions were weakly zonate, which finally led to leaf withering and falling off. Diseased tissues were cut into 5×5 mm2 pieces, which were surface sterilized with 75% ethanol solution for 30 s, washed 3 times in sterilized water, and put on potato dextrose agar (PDA) plates supplemented with 50 µg ml-1 streptomycin. A total of 16 purified fungal isolates with similar phenotypic features were obtained. Three randomly chosen isolates SLY11, SLY24, and SLY25 were utilized for the investigation. Fungal colonies on PDA were first white to gray and later mycelium became olive green to blackish brown. To examine the morphological properties of conidia, we utilized potato carrot agar (PCA) culture medium and incubated it at 23°C under a 12-hour light/dark alternation. Conidia were obclavate or spheroidal, dark brown, with 3 to 5 transverse septa and 1 to 4 longitudinal septa. Conidiophores were septate, solitary, and measured 22.7 (±4.64) × 10.6 (±2.15) µm (n=50), with a conical beak length of 0 to 5.5 µm. The rDNA internal transcribed spacer (ITS), translation elongation factor 1-alpha gene (TEF1), ß-tubulin gene (TUB), and glyceraldehyde 3-phosphate dehydrogenase gene (GAPDH) were amplified using primer pairs ITS1/ITS4, EF1-728F/EF1-986R, Bt2a/Bt2b, and GDF1/GDF2 from genomic DNA. Sequences were submitted to GenBank with accession numbers OL840230, OL840231, OL840232 for ITS, OL982540, OL982541, OL982542 for TEF1, OL982543, OL982544, OL982545 for TUB, OL862608, OL862609, OL862610 for GAPDH sequences of isolates SLY11, SLY24, and SLY25, respectively. BLASTn analysis of ITS (OL840230), TEF1 (OL982540), TUB (OL982543), GAPDH (OL862608) sequences indicated 100, 99.59, 99.68, and 100% similarity to the sequences of Alternaria alternata strain HC-2 (MT644140), BJFA-1 (MK895958), CS36-5 (KY814630), and ag1 (KP057228) in GenBank. Isolates SLY11, SLY24, and SLY25 formed a clade with the type strains CBS 130265 and CBS 130258 of A. alternata in phylogenetic trees established, clearly seperating from other Alternaria spp. The morphological features and molecular analyses supported the isolates as members of A. alternata. To validate the pathogenicity of the isolates, ten healthy leaves of 3-year-old potted pomegranate trees were utilized for testing and inoculated with conidial suspension (106 conidia ml-1), 20 µl each leaf. Control plants were inoculated with sterilized water. An additional pathogenicity test was repeated on wounded leaves. The inoculated plants were placed at 28°C in a greenhouse (12 h light per day and 90% relative humidity) for 5 days. The pathogenicity testing was conducted three times. Distinct lesions were found on the nonwounded and wounded leaves of inoculated plants after 3 to 5 days. The morphology and ITS sequences of the fungi that were reisolated from each of the inoculated plants were similar to that of the inocula, fulfilling Koch's postulates. Fruit rot of pomegranate induced by A. alternata was not identified in our investigation. A. alternata is reported to induce leaf spot disease on P. granatum in India (Zakir et al. 2009), Israel (Ezra et al. 2010), Spain (Garcia-Jimenez et al. 2014). To our knowledge, this is the first report of A. alternata causing leaf spot disease on P. granatum in China. Severe leaf disease caused by A. alternata can lead to reduced pomegranate yields in the harvest stages. This note will aid in pathogen identification and disease control.

Gray Blight Disease on Euonymus japonicas Caused by Pestalotiopsis disseminata in China.

Euonymus japonicas is widely planted as an important landscape species throughout China. In June 2021, a serious gray blight disease was detected on E. japonicas in Henan Province (32°30'58" N, 112°19'44" E), causing severe defoliation of infected trees with a foliar disease incidence of 52 to 70% (n = 100). Gray spots initially appeared on leaves, gradually expanded into irregular white blotches with dark brown borders, eventually leading to wilting and death of the leaves. The junctions between the lesion and healthy tissue of infected leaves were cut into 3 × 3-mm pieces, surface sterilized with 1% NaClO solution for 1 min, rinsed in sterile water, and placed on PDA plates with 50 µg/ml of streptomycin. Three isolates (HY94, HY95, and HY98) were selected for subsequent experiments. The colonies reached 80-85 mm diam after 7 days at 25°C, with undulated margins, white to pale in color, with moderate aerial mycelium on the surface. Conidiomata were globose, solitary, and dark black. Conidia were ellipsoid, straight to slightly curved, 4-septate, 19 to 26.4 × 5 to 7.5 µm (n=100). The apical cell was cylindrical and hyaline, with 2 to 3 tubular apical appendages, unbranched, filiform, 2.5 to 3.5 µm in length. The basal appendage was single, unbranched, centric, 1.5 to 3 µm long. The characteristics were close to those of Pestalotiopsis spp. (Maharachchikumbura et al. 2013). The genomic DNA was extracted, and the rDNA internal transcribed spacer (ITS), the ß-tubulin gene (TUB), and the translation elongation factor 1-alpha gene (TEF1) were amplified by primers ITS1/ITS4, Bt2a/Bt2b, and EF1-728F/EF1-986R, respectively (Carbone and Kohn, 1999). Sequences were submitted to GenBank with accession numbers OL840327-OL840329(ITS), OL961454-OL961456(TUB), and OL961448-OL961450 (TEF1). BLASTn analyses of ITS, TUB, and TEF1 sequences exhibited 99.46, 99.05, and 96.53% similarity to the sequences of Pestalotiopsis disseminata strain MEAN1166 (ITS, 548/551 bp; MT374688) (Silva et al. 2020), PSH2000I-066 (TUB, 418/422 bp; DQ333575), and TAP29O082 (TEF1, 250/259 bp; AB453850), respectively in GenBank. The three isolates formed a clade with the type strains, MEAN 1166 and MAFF238347 of P. disseminata in phylogenetic trees, being clearly seperated from other Pestalotiopsis spp. Based on morphological and molecular evidence, the pathogen was identified as P. disseminata (Maharachchikumbura et al. 2011). To fulfill Koch's postulates, pathogenicity was tested with three isolates. Ten healthy leaves of 5-year-old intact plants were used per isolate and inoculated with mycelial plugs on both nonwounded and wounded leaves. Control leaves were inoculated with agar plugs. The inoculated plants were placed at 28°C in a greenhouse (90% relative humidity). Distinct lesions were observed after 10 days. The pathogen reisolated was identical to that of the original cultures according to phenotype and ITS sequences. The control leaves showed no obvious symptoms. P. disseminata is known to cause disease on several important plants in China, such as Camellia japonica (Zhang et al. 2012), Pinus armandii (Hu et al. 2007), and Tripterygium wilfordii (Kumar et al. 2004). This is the first report of gray blight disease caused by P. disseminata on E. japonicas in China and worldwide. The fungal pathogen identification will provide valuable information for prevention and management of gray blight disease associated with E. japonicas.

Leaf Spot Disease on Euonymus japonicas Caused by Nigrospora oryzae in China.

Euonymus japonicas belong to the family Celastraceae and is native to Japan. This ornamental plant has been widely introduced for cultivation as a hedge plant in China. From August to October 2021, severe leaf lesions were observed on E. japonicas in Meicheng garden in Nanyang (32°59'42"N, 112°33'13"E), Henan Province, China. The disease had very wide coverage in the surveyed areas, with foliar diseases reaching 50%-69% (n=200). The early symptoms were yellow or brown specks on the leaves, mostly at the tip and margin of the leaves. Then the specks gradually expanded into round amorphous and became dark brown, eventually leading to large irregular or circular lesions and even branch necrosis. Twenty symptomatic samples were collected from several individual plants, and the junction areas between infected and healthy tissues were cut into 5×5 mm pieces. The tissues were sterilized in 75% ethanol for 30 seconds and 1% NaClO solution for 1 min, rinsed thrice in sterile water and placed on potato dextrose agar (PDA) plates supplemented with 50 µg/ml of streptomycin, incubated at 25°C for 3 days. The edges of the colony were cut and transferred to new PDA plates for purification. These strains showed similar phenotypes in morphological characters. Three representative purified strains (HY12, HY16, and HY17) were used for further study. Colonies were fast-growing, massive sparse aerial hyphae, initially white, later turning gray and black. Hyphae were branched, septa, and transparent. Conidia were single-celled, dark black, oblate, or nearly spherical, and measured 10.7 to 15.4 µm × 9.8 to 15.5 µm in diameter (n=100). For molecular identification, the rDNA internal transcribed spacer (ITS), the ß-tubulin gene (TUB), and the translation elongation factor 1-alpha gene (TEF1) were amplified from genomic DNA by primers ITS1/ITS4, Bt2a/Bt2b, and EF1-728F/EF1-986R, respectively (Carbone and Kohn, 1999). Sequences were submitted to GenBank with accession numbers OL840319, OL840320, OL840321 for the ITS sequences, OL961451, OL961452, OL961453 for the TUB sequences, and OL961445, OL961446, OL961447 for the TEF1 sequences of the strains HY12, HY16, and HY17, respectively. BLASTn analyses of these sequences exhibited 99 to 100% identity to Nigrospora oryzae strains 62L1, LC6923, and DP-J2 (MZ151384 of ITS, KY019581 of TUB, and MW562242 of TEF1). These morphological features and molecular identification indicated that the pathogen possessed identical characteristics as N. oryzae (Berk. &Broome) Petch. Pathogenicity was tested through in vivo experiments. Mycelial plugs of the pathogen strains were inoculated on the wounded leaflets, meanwhile, agar plugs served as blank controls. Five 2-year-old plants were grown in pots in a climate incubator maintained at a temperature of 28°C and relative humidity of approximately 90%. Symptoms consistent with those previously described were observed on the inoculated leaves of four plants after 3 to 7 days while the control plants remained healthy. The strains of N. oryzae were reisolated from the symptomatic inoculated leaves, fulfilling Koch's postulates. N. oryzae is known to cause disease on a variety of ornamental plants in China, such as purple blow maple (Sun et al. 2011), cleyera (Wang et al. 2017), cotton rose (Han et al. 2021), and Costus speciosus (Sun et al. 2021). To our knowledge, this is the first report of N. oryzae leaf spot on E. japonicas in China. This identification research will be helpful for subsequent disease control and field management of hedge plants.

Amphiphilic Dendritic Nanomicelle-Mediated Delivery of Gemcitabine for Enhancing the Specificity and Effectiveness.

Purpose: Gemcitabine is the first line and the gold standard drug for pancreatic cancer. However, the anticancer efficacy is severely limited by its instability and poor cellular uptake. To enhance the clinical efficacy of gemcitabine, we constructed a novel nanodrug delivery system based on amphiphilic dendrimers and aliphatic gemcitabine prodrug. Methods: An aliphatic gemcitabine prodrug and a small amphiphilic dendrimer were synthesized and characterized by high resolution mass spectrometry (HRMS) as well as nuclear magnetic resonance (NMR). Then the aliphatic gemcitabine prodrug was encapsulated into the small amphiphilic dendrimer by film dispersion method, resulting in a novel nanodrug delivery system. Subsequently, the size, morphology, drug loading, stability, drug release profiles, cell uptake, toxicity, the anticancer activity and in vivo distribution of the new developed gemcitabine delivery system were systematically evaluated by different technical methods, including transmission electron microscopy (TEM), dynamic light-scattering (DLS), ultraviolet spectrophotometer, flow cytometry, in vivo imaging system etc. Results: We developed a novel nanodrug delivery system of gemcitabine using amphiphilic dendrimer. This dendrimer-based gemcitabine nanoformulation reported here possess a high drug loading of 33%. With the features of small size, stable formulation and pH-responsive drug release, the obtained gemcitabine nanoformulation could effectively accumulate in tumor site and rapid uptake in cells. Finally, the gemcitabine nanoformulation displayed more potent anticancer activity compared to free gemcitabine both in vitro and in vivo. Moreover, the nanodrug displayed greatly reduced adverse effects and satisfactory biocompatibility. Conclusion: Benefiting the advantageous features of both amphiphilic dendrimers and nanotechnology-based drug delivery, this gemcitabine nanosystem constitutes a promising therapeutic candidate for pancreatic cancer treatment. This study also underlines the potential use of self-assembling amphiphilic dendrimer-based nanotechnology for improving drug efficacy as well as reducing drug toxicity.

Changes in appetite during quarantine and their association with pre-COVID-19 mental and physical health.

BACKGROUND: The COVID-19 Pandemic resulted in high levels of fear, anxiety, and stress. People with pre-existing physical and mental health conditions may have been more affected by the sudden changes in daily habits during the initial months of global quarantine imposed during the COVID-19 pandemic. METHODS: We designed the Quarantine, Anxiety, and Diet (QUAD) Survey to investigate the effect of pre-existing health conditions on the relationship of COVID-19 stress and food behavior. The anonymous survey was distributed online and only adults were eligible to participate. RESULTS: The results showed that responders with pre-existing health conditions differed from healthy participants in eating behavior during this time of stress. Compared to those classified as healthy, fewer people with pre-existing physical illness showed an increase in appetite with stress during the COVID-19 pandemic. Responders with pre-existing psychiatric illness were more likely to show increases or decreases in appetite with stress compared to healthy responders. Furthermore, higher BMI was associated with higher rate of increased appetite, whereas low BMI showed a higher rate of decreased appetite, both compared to normal BMI. CONCLUSION: The QUAD Survey demonstrated that individuals with pre-COVID-19 psychiatric conditions are at a higher risk of maladaptive food behavior under stress. Since pre-existing psychiatric illnesses and acute stressors are known risk factors for eating disorders, special attention should be placed on those at risk to mediate the psychological and physical effects of stress and anxiety.

TRAM1 protects AR42J cells from caerulein-induced acute pancreatitis through ER stress-apoptosis pathway.

Chronic endoplasmic reticulum (ER) stress in pancreatic acinar cells has emerged as a major contributor to the recovery of acute pancreatitis (AP). However, the molecular mechanisms linking AP and ER stress remain not fully understood. In this study, we employed caerulein to induce AP-like inflammation in the AR42J rat pancreatic acinar cells to mimic the AP-like acinar cell injury. Caerulein can activate ER stress in AR42J cells, but the molecular link between AP and ER stress remains to be identified. We here reported that translocating chain-associated membrane protein 1 (TRAM1), an ER-resident multispanning membrane protein, was involved in the onset of AP-like injury on AR42J cells. TRAM1 was significantly elevated in caerulein-treated AR42J cells. Furthermore, we showed that knockdown of TRAM1 led to hyperactivation of 78 kDa glucose-regulated protein precursor (GRP78) and C/EBP homologous protein (CHOP) and the activation of downstream apoptosis pathway. Given the fact that the activation of ER stress played a protection role in AP, the pro-inflammatory mediators TNF-α and IL-6 and the marker of cell injury LDH were also analyzed. We found that depletion of TRAM1 markedly increased the secretion of TNF-α, IL-6, and LDH in the cells. Moreover, flow cytometry indicated that treatment with caerulein induced a significant decrease of apoptotic index and increase of necrosis index in TRAM1-siRNA cells, compared with control groups, as indicated by downregulated expression of cleaved caspase-3, caspase-8, and caspase-9 mRNA expression activity in TRAM1-siRNA cells. These data implicated that TRAM1 might protect AR42J cells against caerulein-induced AP in AR42J cells through alleviating ER stress.