Edaphic factors mediate the responses of forest soil respiration and its components to nitrogen deposition along an urban-rural gradient.

Exploring the influences of nitrogen deposition on soil carbon (C) flux is necessary for predicting C cycling processes; however, few studies have investigated the effects of nitrogen deposition on soil respiration (Rs), autotrophic respiration (Ra) and heterotrophic respiration (Rh) across urban-rural forests. In this study, a 4-year simulated nitrogen deposition experiment was conducted by treating the experimental plots with 0, 50, or 100 kg·ha-1·year-1 of nitrogen to check out the mechanisms of nitrogen deposition on Rs, Ra, and Rh in urban-rural forests. Our finding indicated a positive association between soil temperature and Rs. Soil temperature sensitivity was significantly suppressed in the experimental plots treated with 100 kg·ha-1·year-1 of nitrogen only in terms of the urban forest Rs and Ra and the rural forest Ra. Nitrogen treatment did not significantly increase Rs and had different influencing mechanisms. In urban forests, nitrogen addition contributed to Rh by increasing soil microbial biomass nitrogen and inhibited Ra by increasing soil ammonium­nitrogen concentration. In suburban forests, the lack of response of Rh under nitrogen addition was due to the combined effects of soil ammonium­nitrogen and microbial biomass nitrogen; the indirect effects from nitrate­nitrogen also contributed to a divergent effect on Ra. In rural forests, the soil pH, dissolved organic C, fine root biomass, and microbial biomass C concentration were the main factors mediating Rs and its components. In summary, the current rate of nitrogen deposition is unlikely to result in significant increases in soil C release in urban-rural forests, high nitrogen deposition is beneficial for reducing the temperature sensitivity of Rs in urban forests. The findings grant a groundwork for predicting responses of forest soil C cycling to global change in the context of urban expansion.

SDG128 is involved in maize leaf inclination.

Maize leaf angle (LA) is a complex quantitative trait that is controlled by developmental signals, hormones, and environmental factors. However, the connection between histone methylation and LAs in maize remains unclear. Here, we reported that SET domain protein 128 (SDG128) is involved in leaf inclination in maize. Knockdown of SDG128 using an RNA interference approach resulted in an expanded architecture, less large vascular bundles, more small vascular bundles, and larger spacing of large vascular bundles in the auricles. SDG128 interacts with ZmGID2 both in vitro and in vivo. Knockdown of ZmGID2 also showed a larger LA with less large vascular bundles and larger spacing of vascular bundles. In addition, the transcription level of cell wall expansion family genes ZmEXPA1, ZmEXPB2, and GRMZM2G005887; transcriptional factor genes Lg1, ZmTAC1, and ZmCLA4; and auxin pathway genes ZmYUCCA7, ZmYUCCA8, and ZmARF22 was reduced in SDG128 and ZmGID2 knockdown plants. SDG128 directly targets ZmEXPA1, ZmEXPB2, LG1, and ZmTAC1 and is required for H3K4me3 deposition at these genes. Together, the results of the present study suggest that SDG128 and ZmGID2 are involved in the maize leaf inclination.

ATX1-generated H3K4me3 is required for efficient elongation of transcription, not initiation, at ATX1-regulated genes.

Tri-methylated H3 lysine 4 (H3K4me3) is associated with transcriptionally active genes, but its function in the transcription process is still unclear. Point mutations in the catalytic domain of ATX1 (ARABIDOPSIS TRITHORAX1), a H3K4 methyltransferase, and RNAi knockdowns of subunits of the AtCOMPASS-like (Arabidopsis Complex Proteins Associated with Set) were used to address this question. We demonstrate that both ATX1 and AtCOMPASS-like are required for high level accumulation of TBP (TATA-binding protein) and Pol II at promoters and that this requirement is independent of the catalytic histone modifying activity. However, the catalytic function is critically required for transcription as H3K4me3 levels determine the efficiency of transcription elongation. The roles of H3K4me3, ATX1, and AtCOMPASS-like may be of a general relevance for transcription of Trithorax-activated eukaryotic genes.