[Advances in the research of transformation and stabilization of soil organic carbon from plant and microbe]. / æ¤ç‰©æºå’Œå¾®ç”Ÿç‰©æºåœŸå£¤æœ‰æœºç¢³è½¬åŒ–ä¸Žç¨³å®šç ”ç©¶è¿›å±•.

Soil organic carbon (SOC) is the core component of terrestrial carbon (C) sink. Exploring the transformation and stabilization mechanism of SOC is key to understand the function of terrestrial C sink which copes with climate change. The traditional perspective is that plant residues are the initial source of SOC. The new concept of "soil microbial C pump" emphasizes that the synthesized products of soil microbial assimilation are important contributors to the stable SOC. This provides a new insight to the sequestration mechanism of SOC. Due to the complex and variable decomposition process of plant residues and the high heterogeneity of microbial residues, the transformation and stabilization mechanism of plant residues and microbial residues into SOC is still unclear. We reviewed research progress in plant and microbial residues, and introduced the characterization methods of quantification and transformation of plant residues and microbial residues, and also summarized the new findings on the transformation of plant and microbial residues into SOC. We further discussed the contribution and driving factors of microbial and plant-derived C to SOC. Finally, we prospected the future development direction and research focus in this field. This review would provide the scientific reference for the research of soil C sequestration in terrestrial ecosystem.

Contribution of microbial necromass to soil organic carbon formation during litter decomposition under incubation conditions.

We conducted a 512-day incubation experiment to study the dynamics of microbial necromass and soil carbon fraction in the 'litter-soil' transformation interface soil layer (TIS) during litter decomposition, using a perennial C3 herb, Stipa bungeana, in the loess hills. The results showed that soil microbial necromass was dominated by fungi in the early and middle stages, and by bacteria in the late stage. The contribution of fungal necromass C to mineral-associated organic C (MAOC) was significantly higher (38.7%-75.8%) than that of bacteria (9.2%-22.5%) and 2-3 times more than the contribution rate of bacterial necromass. Soil organic C (SOC) content was decreasing during litter decomposition. The input of plant C resources stimulated microbial utilization of soil C fractions. The continuous decrease in particulate organic C during the early and late stages of decomposition was directly responsible for the decrease in SOC content. In contrast, the fluctuating changes in microbial necromass C and MAOC played an indirect role in the reduction of SOC. The increase in soil microbial necromass C caused by a single exogenous addition of litter did not directly contribute to SOC accumulation.

Divergent contribution of particulate and mineral-associated organic matter to soil carbon in grassland.

Sequestration of soil organic carbon (SOC) is an effective means to draw atmospheric CO2. Grassland restoration is one of the fastest methods to increase soil C stocks, and particulate-associated C and mineral-associated C play critical roles in soil C stocks during restoration. Herein, we developed a conceptual mechanistic frame regarding the contributions made by mineral-associated organic matter to soil C during the restoration of temperate grasslands. Compared to 1-year grassland restoration, 30-year restoration increased mineral-associated organic C (MAOC) by 41% and particulate organic C (POC) by 47%. The SOC changed from microbial MAOC predominance to plant-derived POC predominance, as the POC was more sensitive to grassland restoration. The POC increased with plant biomass (mainly litter and root biomass), while the increase in MAOC was mainly caused by the combined effects of increasing microbial necromass and leaching of the base cations (Ca-bound C). Plant biomass accounted for 75% of the increase in POC, whereas bacterial and fungal necromass contributed to 58% of the variance in MAOC. POC and MAOC contributed to 54% and 46% of the increase in SOC, respectively. Consequently, the accumulation of the fast (POC) and slow (MAOC) pools of organic matter are important for the sequestration of SOC during grassland restoration. Overall, simultaneous tracing of POC and MAOC helps further understand the mechanisms and predict soil C dynamics combined with the input of plant C, microbial properties, and availability of soil nutrients during grassland restoration.

DNA starvation/stationary phase protection protein of Helicobacter pylori as a potential immunodominant antigen for infection detection.

BACKGROUND: Application of chicken egg yolk immunoglobulin Y (IgY) for Helicobacter pylori (H. pylori, HP) has gained much interest in recent years. Comparing with for treatment, IgY may be more advantageous when used for H. pylori detection. METHODS: Nine strains of H. pylori with different genetic backgrounds were inactivated and used to immunize hens, respectively, for the preparation of polyclonal anti-H. pylori immunoglobulin Y (anti-HP IgY). The proteins of H. pylori with reactivity to anti-HP IgY were detected by Western Blot. The five protein bands that can be well recognized by anti-HP IgY of each group, and were prevalent in all nine strains were excised from SDS-PAGE gel, digested and identified by Nano-HPLC-MS/MS analysis. The potential of these identified proteins as antigen detection targets was then assessed by sequence analysis. RESULTS: Anti-HP IgY derived from each group of specific strain immunized hens can recognize self-strain and non-self-strain antigens well. Five immunodominant antigens were identified as chaperonin GroEL, flagellin A, urease subunit alpha, peroxiredoxin and DNA starvation/stationary phase protection protein. Sequences analysis showed that both peroxiredoxin and DNA starvation/stationary phase protection protein were present in all 1000 strains of H. pylori queried, and the amino acid sequences were highly conserved. The highest sequence consistency between the DNA starvation/stationary phase protection protein of H. pylori and non-Helicobacter organisms was 52.59%, and the consistent sites were scattered and there was no continuous long fragment consensus sequence. CONCLUSION: DNA starvation/stationary phase protection protein was identified as an immunodominant antigen of H. pylori and sequence analysis indicated that it could serve as a potential antigen target for the diagnosis of H. pylori infection.

Various hydrogen bonds make different fates of pharmaceutical contaminants on oxygen-rich nanomaterials.

Various hydrogen bonds, especially charge-assisted hydrogen bond (CAHB), is considered as one of vital mechanisms affecting the environmental behavior and risk of pharmaceutical contaminants (PCs). Herein the sorption/desorption of three PCs including clofibric acid (CA), acetaminophen (ACT), and sulfamerazine (SMZ) on three Oxygen-rich (O-rich) nanoparticles (nano-silica: Nano-SiO2, nano-alumina: Nano-Al2O3, and oxidized carbon nanotubes: O-CNTs) were investigated to explore the effect of various hydrogen bonds with different strengths on environmental behaviors of PCs. The results indicated that although solvent-assisted CAHB, solvent-uninvolved CAHB, and ordinary hydrogen bond (OHB) all played a crucial role in sorption of PCs on three O-rich nanomaterials, they showed significantly different effects on the desorption behaviors of PCs from three sorbents. Compared with OHB (hysteresis index ≤0.0766), the stronger CAHB (hysteresis index ≥0.1981) between PCs and O-rich nanoparticles having comparable pKa with PCs, caused obvious desorption hysteresis of PCs, resulting in their better immobilization on O-rich nanomaterials. The FTIR characterization found that both solvent-assisted and solvent-uninvolved CAHB formation resulted in a new characteristic peak appeared in the high frequency (3660 cm-1 for Nano-SiO2, 3730 cm-1 for Nano-Al2O3, and 3780 cm-1 for O-CNTs). Also, density functional theory (DFT) calculation verified that the smaller |ΔpKa| between PCs and O-rich sorbents, the shorter bond length, and the larger bond angle resulted in the stronger hydrogen bond formed, thereby leading to the greater immobilization of PCs. These results provide in-depth understanding of the environmental behavior and risk of PCs, and light new idea for designed materials to control PCs pollution in the environment.

Deciphering factors driving soil microbial life-history strategies in restored grasslands.

In macroecology, the concept of r- and K-strategy has been widely applied, yet, there have been limited studies on microbial life-history strategies in temperate grasslands using multiple sequencing approaches. Total phospholipid fatty acid (PLFA) analysis, high-throughput meta-genomic sequencing, and GeoChip technologies were used to examine the changes in microbial life-history traits in a chronosequence of restored grasslands (1, 5, 10, 15, 25, and 30 years since restoration). Grassland restoration increased the relative abundances of Actinobacteria, Proteobacteria, and Bacteroidetes but reduced the relative abundances of Acidobacteria, Planctomycetes, and Chloroflexi. PLFA analysis revealed that grassland restoration reduced the fungi:bacteria and Gram-positive:Gram-negative bacteria ratios. Combined with the meta-genomic data, we found that grassland restoration shifted microorganisms from oligotrophic (K-) to copiotrophic (r-) groups, consistent with the increased rRNA operon copy number of the microbial community. Structural equation modeling showed that soil properties positively (p < 0.05) while plant properties negatively (p < 0.05) affected microbial life-history traits. We built a framework to highlight the importance of plant and soil properties in driving microbial life-history traits during grassland restoration. Finally, by incorporating meta-genomic and other microbiological data, this study showed that microbial life-history traits support the idea that rRNA operon copy number is a trait that reflects resource availability to soil microorganisms.

The interior environment design for entrepreneurship education under the virtual reality and artificial intelligence-based learning environment.

Nowadays, with the rapid growth of artificial intelligence (AI), entrepreneurship education has attracted more and more attention from society. To this end, it is necessary to gradually transform the traditional teaching mode into a new type of teaching that is more innovative, practical, and inclusive and in line with entrepreneurship education. The focus of the teaching mode change is on the optimization of the teaching environment. For this purpose, a method derived from distributed virtual reality (DVR) technology is specially designed. It refers to the fact that multiple users can join together through a computer network and participate in a virtual space at the same time to experience the virtual experience together. Based on this, the distributed 3D interior design is innovatively proposed. The innovation is mainly reflected in the application of VR technology, which is different from traditional software design. According to the functions and needs of the entrepreneurship teaching environment, first, the distributed feature information is collected, and second, the corresponding color image model is constructed by the fusion method, and edge contour detection and corresponding feature data extraction are carried out for the distributed image. Using a Red, Green, and Blue (RGB) color decomposition method, the pixel feature decomposition of spatially distributed image color is performed. And the feature reorganization of the 3D point cloud is combined to optimize the color space and color features of the combined design. On this basis, the distributed 3D interior design system is designed with VR and visual simulation technology. Finally, the Three-Dimensional Studio Max (3ds MAX) is used to establish 3D modeling, and the modeling software Multigen Creator is adopted to carry out the hierarchical structural design. The test results manifest that the Normalized Root Mean Square Error (RMSE) and information saturation of the distributed 3D interior design are reduced by 0.2 compared with the traditional design, the time overhead is shortened to one-sixth of the original, and the effect is more in line with the design requirements. It is hoped that this design method can provide new ideas and new perspectives for the optimization of the entrepreneurship teaching environment.

Effect of pH-Dependent Homo/Heteronuclear CAHB on Adsorption and Desorption Behaviors of Ionizable Organic Compounds on Carbonaceous Materials.

Herein, the adsorption/desorption behaviors of benzoic acid (BA) and phthalic acid (PA) on three functionalized carbon nanotubes (CNTs) at various pH were investigated, and the charge-assisted H-bond (CAHB) was verified by DFT and FTIR analyses to play a key role. The results indicated that the adsorption order of BA and PA on CNTs was different from Kow of that at pH 2.0, 4.0, and 7.0 caused by the CAHB interaction. The strength of homonuclear CAHB (≥78.96 kJ·mol-1) formed by BA/PA on oxidized CNTs is stronger than that of heteronuclear CAHB formed between BA/PA and amino-functionalized CNTs (≤51.66 kJ·mol-1). Compared with the heteronuclear CAHB (Hysteresis index, HI ≥ 1.47), the stronger homonuclear CAHB leads to clearly desorption hysteresis (HI ≥ 3.51). Additionally, the contribution of homonuclear CAHB (≥52.70%) was also greater than that of heteronuclear CAHB (≤45.79%) at pH 7.0. These conclusions were further confirmed by FTIR and DFT calculation, and the crucial evidence of CAHB formation in FTIR was found. The highlight of this work is the identification of the importance and difference of pH-dependent homonuclear/heteronuclear CAHB on the adsorption and desorption behaviors of ionizable organic compounds on carbonaceous materials, which can provide a deeper understanding for the removal of ionizable organic compounds by designed carbonaceous materials.

Distribution characteristics of the sabA, hofC, homA, homB and frpB-4 genes of Helicobacter pylori in different regions of China.

BACKGROUND: Helicobacter pylori (H. pylori) encodes numerous outer membrane proteins (OMPs), with considerable geographic heterogeneity and related to different clinical outcomes. This study aimed to investigate the distribution characteristics of five important OMP genes (sabA, hofC, homA, homB and frpB-4) in different regions of China. MATERIALS AND METHOD: A total of 266 strains were isolated from 348 stomach biopsy specimens in Shandong, Guangxi, Heilongjiang, Hunan, and Qinghai provinces. The presence of sabA, hofC, homA, homB and frpB-4 gene was detected by polymerase chain reaction (PCR) from H. pylori genomic DNA. RESULTS: Among the strains in five regions, the prevalence of frpB-4 was 100% and that of hofC was 97.7%. The prevalence of homB in the isolates from Qinghai (45.5%) was significantly lower than that in Shandong (75.3%), Guangxi (76.9%) and Hunan (69.6%) (P<0.05). The frequency of homA in Shandong (30.1%) was significantly lower than in Guangxi (57.7%) and Qinghai (63.6%) (P<0.05). The prevalence of the sabA gene in Shandong, Guangxi, Heilongjiang, Hunan and Qinghai provinces was 21.9%, 59.7%, 45.9%, 52.2%, and 18.2%, respectively (P<0.05). The sabA "on" status was significantly more frequent in isolates from Guangxi (46.8%), Heilongjiang (37.8%), and Hunan (47.8%) than Qinghai (3.0%) (P<0.05). The presence of homA and sabA genes may be negatively correlated with the development of gastritis. There was no significant association between the frpB-4, hofC, homB gene and clinical outcomes. CONCLUSION: The prevalence of homA, homB, and sabA genes and the sabA "on" or "off" status have significant geographical differences among five provinces in China. The presence of homA and sabA genes may be protective factors of gastritis.

Salted duck eggs: the source for pathogens and antibiotic resistant bacteria.

Salted duck eggs as a convenient food are very popular in China and Southeast Asia. Generally, they are produced by traditional curing methods. Here we used traditional methods to profile the bacterial community of salted duck eggs purchased from markets to systematically investigate their microbiological safety. 77 bacteria belonging to 14 genera were isolated. Bacillus related to flavor formation of salted duck eggs were the dominant genus. However, there existed some clinical pathogens which can cause food poisoning, such as Klebsiella pneumoniae, Staphylococcus aureus, and Aeromonas hydrophila. Moreover, PCA analysis showed that the composition of bacteria was related to the source and storage time rather than sampling sites. Besides, bacteria in the shell, intima and egg white of salted duck eggs were cross-linked. In addition, antimicrobial susceptibility testing indicated that resistant bacteria reached to 47.9%. And there was also no significant difference in bacterial resistance with sampling sites. Consequently, it's necessary to strengthen the food quality of salted duck eggs and improve personal dietary habit. SUPPLEMENTARY INFORMATION: Supplementary information accompanies this paper at 10.1007/s13197-020-04962-w.

Geographic distribution of the cagA, vacA, iceA, oipA and dupA genes of Helicobacter pylori strains isolated in China.

BACKGROUND: There are geographic variations in the genotypes of Helicobacter pylori (H. pylori) cagA, vacA, iceA, oipA and dupA. The aim of the study was to investigate the distribution of these genotypes among H. pylori strains from five regions of China and their association with clinical outcomes. MATERIALS AND METHODS: Gastric biopsy specimens were obtained from 348 patients with different gastrointestinal diseases in the five regions of China. The regional distribution was 89 patients from Shandong, 91 from Guangxi, 57 from Hunan, 58 from Qinghai and 53 from Heilongjiang. The presence of cagA, vacA, iceA, oipA and dupA genotypes was determined by polymerase chain reaction (PCR) from H. pylori DNA. RESULTS: A total of 269 H. pylori isolates were obtained, of which 74 isolates were from Shandong, 78 from Guangxi, 46 from Hunan, 33 from Qinghai and 38 from Heilongjiang. The cagA-positive status was predominant in the five regions. The predominant vacA genotypes were s1c (73.4%), m2 (70.6%) and i1 (92.9%). In strains from Shandong, s1a and m1 were dominant. By contrast, s1c was dominant in Guangxi and i1 was dominant in Hunan and Heilongjiang. The prevalence of m2 subtype in Qinghai (78.8%) was significantly higher than that in other regions (P < 0.05). The predominant iceA genotype was iceA1 and the frequency of iceA1 was significantly more prevalent in Hunan than in other regions (P < 0.05). The oipA status "on" gene was more frequent in Shandong (91.9%) and Guangxi (91%) than in Heilongjiang (71.7%) (P < 0.05). Conversely, the dupA-positive status was less than half in Shandong (31.1%) and Guangxi (15.4%), whereas it was 73.9% in Hunan and 81.8% in Qinghai (P < 0.001). There were no significant associations between the cagA, vacA, iceA, oipA genotypes and clinical outcomes. The dupA-positive strains were more common in peptic ulcer disease (PUD) patients than in non-ulcer dyspepsia (NUD) patients in Shandong and Guangxi (P < 0.05), but the association was not observed in other geographic regions. CONCLUSIONS: There was significant geographic diversity of H. pylori genotypes in different regions of China and the presence of dupA gene can be considered as a marker for the development of gastroduodenal diseases. However, the cagA, iceA, vacA and oipA genes cannot be regarded for prediction of the clinical presentation of H. pylori infection in China.

Diversity of 3' variable region of cagA gene in Helicobacter pylori strains isolated from Chinese population.

BACKGROUND: The cytotoxin-associated gene A (cagA) is one of the most important virulence factors of Helicobacter pylori (H. pylori). There is a highly polymorphic Glu-Pro-Ile-Tyr-Ala (EPIYA) repeat region in the C-terminal of CagA protein. This repeat region is thought to play an important role in the pathogenesis of gastrointestinal diseases. The aim of this study was to investigate the diversity of cagA 3' variable region and the amino acid polymorphisms in the EPIYA segments of the CagA C-terminal region of H. pylori, and their association with gastroduodenal diseases. METHODS: A total of 515 H. pylori strains from patients in 14 different geographical regions of China were collected. The genomic DNA from each strain was extracted and the cagA 3' variable region was amplified by polymerase chain reaction (PCR). The PCR products were sequenced and analyzed using MEGA 7.0 software. RESULTS: A total of 503 (97.7%) H. pylori strains were cagA-positive and 1,587 EPIYA motifs were identified, including 12 types of EPIYA or EPIYA-like sequences. In addition to the four reported major segments, several rare segments (e.g., B', B″ and D') were defined and 20 different sequence types (e.g., ABD, ABC) were found in our study. A total of 481 (95.6%) strains carried the East Asian type CagA, and the ABD subtypes were most prevalent (82.1%). Only 22 strains carried the Western type CagA, which included AC, ABC, ABCC and ABCCCC subtypes. The CagA-ABD subtype had statistical difference in different geographical regions (P = 0.006). There were seven amino acid polymorphisms in the sequences surrounding the EPIYA motifs, among which amino acids 893 and 894 had a statistical difference with gastric cancer (P = 0.004). CONCLUSIONS: In this study, 503 CagA sequences were studied and analyzed in depth. In Chinese population, most H. pylori strains were of the CagA-ABD subtype and its presence was associated with gastroduodenal diseases. Amino acid polymorphisms at residues 893 and 894 flanking the EPIYA motifs had a statistically significant association with gastric cancer.

Alterations of Fucosyltransferase Genes and Fucosylated Glycans in Gastric Epithelial Cells Infected with Helicobacter pylori.

Helicobacter pylori (H. pylori) adhesion to human gastric epithelial cells is closely linked with fucosylated glycans. Therefore, investigation of fucosylation in the interaction of gastric epithelial cells with H. pylori is critical. In this study we used lectin microarrays to detect the expression of fucosylated glycans in gastric epithelial cells (GES-1) infected with H. pylori strains isolated from patients with different diseases including chronic gastritis, duodenal ulcers, and gastric cancer (each containing two strains) at 4 h. In addition, we investigated the time-course expression of fucosyltransferase (FUT) 1-6 genes in GES-1 cells stimulated with H. pylori strains at 0.5-8 h. At 4 h post-infection, Lotus, AAA, BC2LCN, PA-IIL, CNL and ACG lectins had increased signals in H. pylori-infected GES-1 cells compared to uninfected cells. Higher expression of FUT1 and FUT2 was detected in all H. pylori-infected GES-1 cells within 2 h, regardless of the H. pylori strain. In particular, the expression of FUT2 was higher in H. pylori-infected GES-1 cells with a higher fold change in levels of BC2LCN lectin specific to α1-2 linked fucose (Fuc) at 4 h. The results suggest that the high levels of α1, 2-linked Fuc synthesized by FUT1/2, might play a role in the preliminary stage of H. pylori infection. This provides us with pivotal information to understand the adhesion of H. pylori to human gastric epithelial cells.

Effect of vegetation patchiness on the subsurface water distribution in abandoned farmland of the Loess Plateau, China.

Patchiness of grassland results in important effects on ecohydrological processes in arid and semiarid areas; however, the influences on subsurface water flow and soil water distribution remain poorly understood, particularly during vegetation succession on slopes. This study examined these effects by comparing the water flow behaviors and preferential infiltration between vegetation patches (VP) and interspace patches (IP) in three sites at different states of vegetation succession (grass, subshrub and shrub) in abandoned farmland of the Loess Plateau, China. Dye tracer infiltration showed that patchiness of vegetation increased spatial variations of soil water and preferential infiltration by increasing the densities of fine root length and fine root volume in the soil profile. Moreover, the more abundant and intricate roots following a lateral direction beneath VP likely contributed to lateral flow and infiltration variability. However, differences between VP and IP were not significant because considerable living fine roots and decayed roots of IP also provided preferential flow pathways. Our finding indicated that IP could compete with VP for access to soil water resources, which potentially increased hillslope-scale infiltration and reduced surface runoff and erosion risk. Under the different states of vegetation succession, subshrub patches showed significantly greater preferential infiltration volume (28.53 mm) and contribution of preferential infiltration to total infiltration (60.58%) than grass and shrub patches. Vegetation patch size made positive effects on improving preferential flow and water movement. Greater preferential flow in subshrub patches played a positive role in soil water storage and replenishment. Therefore, natural restoration of a slope area with small heterogeneity in preferential flow can be successfully applied in the Loess Plateau, particularly during the subshrub succession state.

Comparative analysis of gut bacterial communities in housefly larvae fed different diets using a high-throughput sequencing approach.

Housefly larvae are a synanthropic host for various bacteria, including pathogens and commensals and an important protein source for monogastric animal feed. Many factors, such as diets, life stages, host habitats can influence microbial community structure. In this study, the diversity of bacterial communities in the gut of housefly larvae fed on different artificial diets was comprehensively characterized using high-throughput sequencing with the aim shedding light on an optimal larval diet. The results showed that the dominant bacteria belonging to Proteobacteria, Firmicutes and Bacteroidetes phyla were related to polysaccharide degradation. The comparative analysis indicated that the dominant intestinal bacteria of larvae fed on high-protein were similar to those on high-fat diet. The same was the case in larvae fed high-starch diet and wheat bran alone. In addition, the diversity of intestinal bacteria at genus level in larvae fed high-protein and high-fat diet was higher than in larvae fed the other two diets. Further analysis indicated that the increase of potential commensals and decrease of pathogens in larvae fed on high-fat diet contributed to the increase of housefly larvae immunity. It established a foundation for further research on improvement of nutrition of housefly larvae used for poultry and fish feed.

[Concentrations of different carbon and nitrogen fractions in rhizosphere and non-rhizosphere soils of typical plant species in mountainous area of southern Ningxia, Northwest China].

Taking the rhizosphere and non-rhizosphere soils of five typical plants Agropyron cristatum, Artemisia frigida, Pseudoraphis bungeana, Thymus mongolicus, and Artemisia sacrorum in a mountainous area of southern Ningxia as test objects, this paper studied their C and N forms contents. The C and N forms contents in the rhizosphere and non-rhizosphere soils differed with plant species. In the rhizosphere soil of A. sacrorum, the C content was the highest, with the total soil organic C (TOC), light fraction organic C (LFOC), and heavy fraction organic C contents being 22.94, 1.95, and 20. 88 g kg-1, respectively. In the rhizosphere soil of P. bungeana, the N content was the highest, with the total N (TN), mineralizable N (MN), and available N contents being 2.05 g kg-1 , 23.73 mg kg-1, and 11.99 mg kg-1 , respectively. In the rhizosphere soil of A. frigida, the LFOC/TOC and MN/TN ratios were the highest, which benefited the C and N transformed into more active forms. Light fraction organic C and mineralizable N could be used as the sensitive indicators of plant habitat change. For the five plant species, the contents of different C and N forms in the rhizosphere soil were generally higher than those in the non-rhizosphere soil.