Ethanol Extract of Rosa laevigata Michx. Fruit Inhibits Inflammatory Responses through NF-κB/MAPK Signaling Pathways via AMPK Activation in RAW 264.7 Macrophages.

The fruit of Rosa laevigata Michx. (FR), a traditional Chinese herb utilized for the treatment of a variety diseases, has notably diverse pharmacological activities including hepatoprotective, anti-oxidant, and anti-inflammatory effects. Despite ongoing research on illustrating the underlying anti-inflammatory mechanism of FR, the principal mechanism remained inadequately understood. In this study, we investigated in depth the molecular mechanism of the anti-inflammatory actions of the ethanol extract of FR (EFR) and its potential targets using lipopolysaccharide (LPS)-stimulated RAW 264.7 macrophages in vitro. We showed that EFR effectively ameliorated the overproduction of inflammatory mediators and cytokines, as well as the expression of related genes. It was further demonstrated that LPS-induced activation of nuclear factor kappa B (NF-κB) and mitogen-activated protein kinases (MAPKs) were significantly inhibited by pretreatment with EFR, accompanied by a concomitant decrease in the nuclear translocation of the p65 subunit of NF-κB and activator protein 1 (AP-1). In addition, EFR pretreatment potently prevented LPS-induced decreased phosphorylation of adenosine monophosphate-activated protein kinase (AMPK). Our data also revealed that the activation of AMPK and subsequent inhibition of the mammalian target of the rapamycin (mTOR) signaling pathway was probably responsible for the inhibitory effect of EFR on LPS-induced inflammatory responses, evidenced by reverse changes observed under the condition of AMPK inactivation following co-treatment with the AMPK-specific inhibitor Compound C. Finally, the main components with an anti-inflammatory effect in EFR were identified as madecassic acid, ellagic acid, quinic acid, and procyanidin C1 by LC-MS and testified based on the inhibition of NO production and inflammatory mediator expression. Taken together, our results indicated that EFR was able to ameliorate inflammatory responses via the suppression of MAPKs/NF-κB signaling pathways following AMPK activation, suggesting the therapeutic potential of EFR for inflammatory diseases.

Comparative Proteomics of Root Apex and Root Elongation Zones Provides Insights into Molecular Mechanisms for Drought Stress and Recovery Adjustment in Switchgrass.

Switchgrass plants were grown in a Sandwich tube system to induce gradual drought stress by withholding watering. After 29 days, the leaf photosynthetic rate decreased significantly, compared to the control plants which were watered regularly. The drought-treated plants recovered to the same leaf water content after three days of re-watering. The root tip (1cm basal fragment, designated as RT1 hereafter) and the elongation/maturation zone (the next upper 1 cm tissue, designated as RT2 hereafter) tissues were collected at the 29th day of drought stress treatment, (named SDT for severe drought treated), after one (D1W) and three days (D3W) of re-watering. The tandem mass tags mass spectrometry-based quantitative proteomics analysis was performed to identify the proteomes, and drought-induced differentially accumulated proteins (DAPs). From RT1 tissues, 6156, 7687, and 7699 proteins were quantified, and 296, 535, and 384 DAPs were identified in the SDT, D1W, and D3W samples, respectively. From RT2 tissues, 7382, 7255, and 6883 proteins were quantified, and 393, 587, and 321 proteins DAPs were identified in the SDT, D1W, and D3W samples. Between RT1 and RT2 tissues, very few DAPs overlapped at SDT, but the number of such proteins increased during the recovery phase. A large number of hydrophilic proteins and stress-responsive proteins were induced during SDT and remained at a higher level during the recovery stages. A large number of DAPs in RT1 tissues maintained the same expression pattern throughout drought treatment and the recovery phases. The DAPs in RT1 tissues were classified in cell proliferation, mitotic cell division, and chromatin modification, and those in RT2 were placed in cell wall remodeling and cell expansion processes. This study provided information pertaining to root zone-specific proteome changes during drought and recover phases, which will allow us to select proteins (genes) as better defined targets for developing drought tolerant plants. The mass spectrometry proteomics data are available via ProteomeXchange with identifier PXD017441.

Effects of fly ash application on plant biomass and element accumulations: a meta-analysis.

Fly ash generated from coal-fired power plants is a source of potential pollutants, but can be used as a soil ameliorant to increase plant biomass and yield in agriculture. However, the effects of fly ash soil application on plant biomass and the accumulation of both nutrient and toxic elements in plants remain unclear. Based on 85 articles, we conducted a comprehensive meta-analysis to evaluate changes in plant biomass and concentrations of 21 elements in plants in response to fly ash application. These elements included macro-nutrients (N, P, K, Ca, and S), micro-nutrients (B, Co, Cu, Fe, Mn, Mo, Ni, and Zn), and metal(loid)s (Al, As, Cd, Cr, Pb, and Se). Overall, fly ash application decreased plant biomass by 15.2%. However, plant biomass was enhanced by fly ash application by 11.6-29.2% at lower application rates (i.e. <25% of soil mass), and decreased by 45.8% at higher application rates (i.e. 50-100%). Belowground biomass was significantly reduced while yield was enhanced by fly ash application. Most of the element concentrations in plants were enhanced by fly ash application, and followed a descending order with metal(loid)s > micro-nutrients > macro-nutrients. Concentrations of elements tended to increase with an increase in fly ash application rate. Our syntheses indicated that fly ash should be applied at less than 25% in order to enhance plant biomass and yield but avoid high accumulations of metal(loid)s.

Effects of precipitation changes on switchgrass photosynthesis, growth, and biomass: A mesocosm experiment.

Climate changes, including chronic changes in precipitation amounts, will influence plant physiology and growth. However, such precipitation effects on switchgrass, a major bioenergy crop, have not been well investigated. We conducted a two-year precipitation simulation experiment using large pots (95 L) in an environmentally controlled greenhouse in Nashville, TN. Five precipitation treatments (ambient precipitation, and -50%, -33%, +33%, and +50% of ambient) were applied in a randomized complete block design with lowland "Alamo" switchgrass plants one year after they were established from tillers. The growing season progression of leaf physiology, tiller number, height, and aboveground biomass were determined each growing season. Precipitation treatments significantly affected leaf physiology, growth, and aboveground biomass. The photosynthetic rates in the wet (+50% and +33%) treatments were significantly enhanced by 15.9% and 8.1%, respectively, than the ambient treatment. Both leaf biomass and plant height were largely increased, resulting in dramatically increases in aboveground biomass by 56.5% and 49.6% in the +50% and +33% treatments, respectively. Compared to the ambient treatment, the drought (-33% and -50%) treatments did not influence leaf physiology, but the -50% treatment significantly reduced leaf biomass by 37.8%, plant height by 16.3%, and aboveground biomass by 38.9%. This study demonstrated that while switchgrass in general is a drought tolerant grass, severe drought significantly reduces Alamo's growth and biomass, and that high precipitation stimulates its photosynthesis and growth.

Nitrogen Fertilization Elevated Spatial Heterogeneity of Soil Microbial Biomass Carbon and Nitrogen in Switchgrass and Gamagrass Croplands.

The effects of intensive nitrogen (N) fertilizations on spatial distributions of soil microbes in bioenergy croplands remain unknown. To quantify N fertilization effect on spatial heterogeneity of soil microbial biomass carbon (MBC) and N (MBN), we sampled top mineral horizon soils (0-15 cm) using a spatially explicit design within two 15-m2 plots under three fertilization treatments in two bioenergy croplands in a three-year long fertilization experiment in Middle Tennessee, USA. The three fertilization treatments were no N input (NN), low N input (LN: 84 kg N ha-1 in urea) and high N input (HN: 168 kg N ha-1 in urea). The two crops were switchgrass (SG: Panicum virgatum L.) and gamagrass (GG: Tripsacum dactyloides L.). Results showed that N fertilizations little altered central tendencies of microbial variables but relative to LN, HN significantly increased MBC and MBC:MBN (GG only). HN possessed the greatest within-plot variances except for MBN (GG only). Spatial patterns were generally evident under HN and LN plots and much less so under NN plots. Substantially contrasting spatial variations were also identified between croplands (GG > SG) and among variables (MBN, MBC:MBN > MBC). This study demonstrated that spatial heterogeneity is elevated in microbial biomass of fertilized soils likely by uneven fertilizer application in bioenergy crops.

A global meta-analysis of soil phosphorus dynamics after afforestation.

Afforestation significantly affects soil chemistry and biota, but its effects on the potentially growth-limiting nutrient phosphorus (P) had not to our knowledge been analyzed globally. We conducted a comprehensive meta-analysis of 220 independent sampling sites from 108 articles to evaluate global patterns and controls of soil P change following afforestation. Overall, total P concentration decreased by 11% and total P stock by 12% in the top 20 cm of mineral soil following afforestation, with no change in available P. Time since afforestation had no consistent effect on total P, while available P tended to increase with time. Prior land cover was the most influential factor for soil P change after afforestation, with available P increasing on native vegetation but decreasing on cropland. Afforestation increased available P by 22% without decreasing total P on formerly 'degraded' land, but depleted total P by 15% at nondegraded sites. Climate also influenced soil P response to afforestation, with larger P loss in the tropics. Afforestation did not appear to directly induce P limitation, as available P only decreased on cropland. However, substantial declines in total P may drive tropical plantations toward greater P limitation as the capacity to replenish available P decreases.

Drought-Induced Leaf Proteome Changes in Switchgrass Seedlings.

Switchgrass (Panicum virgatum) is a perennial crop producing deep roots and thus highly tolerant to soil water deficit conditions. However, seedling establishment in the field is very susceptible to prolonged and periodic drought stress. In this study, a "sandwich" system simulating a gradual water deletion process was developed. Switchgrass seedlings were subjected to a 20-day gradual drought treatment process when soil water tension was increased to 0.05 MPa (moderate drought stress) and leaf physiological properties had expressed significant alteration. Drought-induced changes in leaf proteomes were identified using the isobaric tags for relative and absolute quantitation (iTRAQ) labeling method followed by nano-scale liquid chromatography mass spectrometry (nano-LC-MS/MS) analysis. Additionally, total leaf proteins were processed using a combinatorial library of peptide ligands to enrich for lower abundance proteins. Both total proteins and those enriched samples were analyzed to increase the coverage of the quantitative proteomics analysis. A total of 7006 leaf proteins were identified, and 257 (4% of the leaf proteome) expressed a significant difference (p < 0.05, fold change <0.6 or >1.7) from the non-treated control to drought-treated conditions. These proteins are involved in the regulation of transcription and translation, cell division, cell wall modification, phyto-hormone metabolism and signaling transduction pathways, and metabolic pathways of carbohydrates, amino acids, and fatty acids. A scheme of abscisic acid (ABA)-biosynthesis and ABA responsive signal transduction pathway was reconstructed using these drought-induced significant proteins, showing systemic regulation at protein level to deploy the respective mechanism. Results from this study, in addition to revealing molecular responses to drought stress, provide a large number of proteins (candidate genes) that can be employed to improve switchgrass seedling growth and establishment under soil drought conditions (Data are available via ProteomeXchange with identifier PXD004675).

Responses of corn physiology and yield to six agricultural practices over three years in middle Tennessee.

Different agricultural practices may have substantial impacts on crop physiology and yield. However, it is still not entirely clear how multiple agricultural practices such as tillage, biochar and different nutrient applications could influence corn physiology and yield. We conducted a three-year field experiment to study the responses of corn physiology, yield, and soil respiration to six different agricultural practices. The six treatments included conventional tillage (CT) or no tillage (NT), in combination with nitrogen type (URAN or chicken litter) and application method, biochar, or denitrification inhibitor. A randomized complete block design was applied with six replications. Leaf photosynthetic rate, transpiration, plant height, leaf area index (LAI), biomass, and yield were measured. Results showed that different agricultural practices had significant effects on plant leaf photosynthesis, transpiration, soil respiration, height, and yield, but not on LAI and biomass. The average corn yield in the NT-URAN was 10.03 ton/ha, 28.9% more than in the CT-URAN. Compared to the NT-URAN, the NT-biochar had lower soil respiration and similar yield. All variables measured showed remarkable variations among the three years. Our results indicated that no tillage treatment substantially increased corn yield, probably due to the preservation of soil moisture during drought periods.

Corn Yield and Soil Nitrous Oxide Emission under Different Fertilizer and Soil Management: A Three-Year Field Experiment in Middle Tennessee.

BACKGROUND: A three-year field experiment was conducted to examine the responses of corn yield and soil nitrous oxide (N2O) emission to various management practices in middle Tennessee. METHODOLOGY/PRINCIPAL FINDINGS: The management practices include no-tillage + regular applications of urea ammonium nitrate (NT-URAN); no-tillage + regular applications of URAN + denitrification inhibitor (NT-inhibitor); no-tillage + regular applications of URAN + biochar (NT-biochar); no-tillage + 20% applications of URAN + chicken litter (NT-litter), no-tillage + split applications of URAN (NT-split); and conventional tillage + regular applications of URAN as a control (CT-URAN). Fertilizer equivalent to 217 kg N ha(-1) was applied to each of the experimental plots. Results showed that no-tillage (NT-URAN) significantly increased corn yield by 28% over the conventional tillage (CT-URAN) due to soil water conservation. The management practices significantly altered soil N2O emission, with the highest in the CT-URAN (0.48 mg N2O m(-2) h(-1)) and the lowest in the NT-inhibitor (0.20 mg N2O m(-2) h(-1)) and NT-biochar (0.16 mg N2O m(-2) h(-1)) treatments. Significant exponential relationships between soil N2O emission and water filled pore space were revealed in all treatments. However, variations in soil N2O emission among the treatments were positively correlated with the moisture sensitivity of soil N2O emission that likely reflects an interactive effect between soil properties and WFPS. CONCLUSION/SIGNIFICANCE: Our results indicated that improved fertilizer and soil management have the potential to maintain highly productive corn yield while reducing greenhouse gas emissions.