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Self-hybridizing structures based on transition metal dichalcogenides (TMDCs) are becoming promising candidates for the study of an intrinsic strong light-matter coupling because of the efficient mode overlap with much simplified geometries. However, realizing flexible tuning of intrinsic strong coupling in such TMDC-based structures is still challenging. Here, we propose a strategy for flexible tuning of the intrinsic strong light-matter coupling based on a bulk TMDC material. We report the first demonstration of the strong coupling of intrinsic excitons to whispering gallery modes (WGMs) supported by an all-TMDC nanocavity. Importantly, by simply controlling angles of incidence, a selective excitation of WGMs and an anapole can be realized, which enables a direct modulation of self-hybridized interactions from a bright WGM-exciton coupling to a dark anapole-exciton coupling. Our work is expected to provide unique opportunities for engineering a strong light-matter coupling and to open exciting avenues for highly integrated novel nanophotonic devices.
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Determination of tipping points in nitrogen (N) isotope (δ15N) natural abundance, especially soil δ15N, with increasing aridity, is critical for estimating N-cycling dynamics and N limitation in terrestrial ecosystems. However, whether there are linear or nonlinear responses of soil δ15N to increases in aridity and if these responses correspond well with soil N cycling remains largely unknown. In this study, we investigated soil δ15N and soil N-cycling characteristics in both topsoil and subsoil layers along a drought gradient across a 3000-km transect of drylands on the Qinghai-Tibetan Plateau. We found that the effect of increasing aridity on soil δ15N values shifted from negative to positive with thresholds at aridity index (AI) = 0.27 and 0.29 for the topsoil and subsoil, respectively, although soil N pools and N transformation rates linearly decreased with increasing aridity in both soil layers. Furthermore, we identified markedly different correlations between soil δ15N and soil N-cycling traits above and below the AI thresholds (0.27 and 0.29 for topsoil and subsoil, respectively). Specifically, in wetter regions, soil δ15N positively correlated with most soil N-cycling traits, suggesting that high soil δ15N may result from the "openness" of soil N cycling. Conversely, in drier regions, soil δ15N showed insignificant relationships with soil N-cycling traits and correlated well with factors, such as soil-available phosphorus and foliage δ15N, demonstrating that pathways other than typical soil N cycling may dominate soil δ15N under drier conditions. Overall, these results highlight that different ecosystem N-cycling processes may drive soil δ15N along the aridity gradient, broadening our understanding of N cycling as indicated by soil δ15N under changing drought regimes. The aridity threshold of soil δ15N should be considered in terrestrial N-cycling models when incorporating 15N isotope signals to predict N cycling and availability under climatic dryness.
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Secas , Ecossistema , Ciclo do Nitrogênio , Isótopos de Nitrogênio , Solo , Solo/química , Isótopos de Nitrogênio/análise , China , Nitrogênio/análise , Nitrogênio/metabolismo , Clima DesérticoRESUMO
Growing evidence indicates that plant community structure and traits have changed under climate warming, especially in cold or high-elevation regions. However, the impact of these warming-induced changes on ecosystem carbon sequestration remains unclear. Using a warming experiment on the high-elevation Qinghai-Tibetan Plateau, we found that warming not only increased plant species height but also altered species composition, collectively resulting in a taller plant community associated with increased net ecosystem productivity (NEP). Along a 1,500 km transect on the Plateau, taller plant community promoted NEP and soil carbon through associated chlorophyll content and other photosynthetic traits at the community level. Overall, plant community height as a dominant trait is associated with species composition and regulates ecosystem C sequestration in the high-elevation biome. This trait-based association provides new insights into predicting the direction, magnitude and sensitivity of ecosystem C fluxes in response to climate warming.
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Sequestro de Carbono , Ecossistema , Aquecimento Global , Plantas/metabolismo , Fotossíntese , Mudança Climática , Altitude , Tibet , Carbono/metabolismo , Solo/químicaRESUMO
The 2-hydroxy-4-(methylthio) butanoic acid isopropyl ester (HMBi), a rumen protective methionine, has been extensively studied in dairy cows and beef cattle and has been shown to regulate gastrointestinal microbiota and improve production performance. However, knowledge of the application of HMBi on cashmere goats and the simultaneous study of rumen and hindgut microbiota is still limited. In this study, HMBi supplementation increased the concentration of total serum protein, the production of microbial protein in the rumen and feces, as well as butyrate production in the feces. The results of PCoA and PERMANOVA showed no significant difference between the rumen microbiota, but there was a dramatic difference between the fecal microbiota of the two groups of Cashmere goats after the HMBi supplementation. Specifically, in the rumen, HMBi significantly increased the relative abundance of some fiber-degrading bacteria (such as Fibrobacter) compared with the CON group. In the feces, as well as a similar effect as in the rumen (increasing the relative abundance of some fiber-degrading bacteria, such as Lachnospiraceae FCS020 group and ASV32), HMBi diets also increased the proliferation of butyrate-producing bacteria (including Oscillospiraceae UCG-005 and Christensenellaceae R-7 group). Overall, these results demonstrated that HMBi could regulate the rumen and fecal microbial composition of Liaoning cashmere goats and benefit the host.
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Ésteres , Microbiota , Animais , Bovinos , Feminino , Ácido Butírico/farmacologia , Ácido Butírico/metabolismo , Ésteres/metabolismo , Rúmen/microbiologia , Fermentação , Cabras , Dieta/veterinária , Fezes , Bactérias/metabolismo , Suplementos Nutricionais , Ração Animal/análise , Lactação/fisiologiaRESUMO
Type 2 diabetic osteoporosis (T2DOP) is a common complication in diabetic patients that seriously affects their health and quality of life. The pathogenesis of T2DOP is complex, and there are no targeted governance means in modern medicine. Citri Reticulatae Pericarpium (CRP) is a traditional Chinese medicine that has a long history and has been used in the treatment of osteoporosis diseases. However, the molecular mechanism for the CRP treatment of T2DOP is not clear. Therefore, this study aimed to explore the underlying mechanisms of CRP for the treatment of T2DOP by using network pharmacology and molecular modeling techniques. By retrieving multiple databases, we obtained 5 bioactive compounds and 63 common targets of bioactive compounds with T2DOP, and identified AKT 1, TP 53, JUN, BCL 2, MAPK 1, NFKB 1, and ESR 1 as the core targets of their PPI network. Enrichment analysis revealed that these targets were mainly enriched in the estrogen signaling pathway, TNF signaling pathway, and AGE-RAGE signaling pathway in diabetics, which were mainly related to oxidative stress and hormonal regulation. Molecular docking and molecular dynamics simulations have shown the excellent binding effect of the bioactive compounds of CRP and the core targets. These findings reveal that CRP may ameliorate T2DOP through multiple multicomponent and multitarget pathways.
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Diabetes Mellitus Tipo 2 , Osteoporose , Humanos , Farmacologia em Rede , Simulação de Acoplamento Molecular , Qualidade de Vida , Osteoporose/tratamento farmacológico , Diabetes Mellitus Tipo 2/tratamento farmacológicoRESUMO
Climate warming, often accompanied by extreme drought events, could have profound effects on both plant community structure and ecosystem functioning. However, how warming interacts with extreme drought to affect community- and ecosystem-level stability remains a largely open question. Using data from a manipulative experiment with three warming treatments in an alpine meadow that experienced one extreme drought event, we investigated how warming modulates resistance and recovery of community structural and ecosystem functional stability in facing with extreme drought. We found warming decreased resistance and recovery of aboveground net primary productivity (ANPP) and structural resistance but increased resistance and recovery of belowground net primary productivity (BNPP), overall net primary productivity (NPP), and structural recovery. The findings highlight the importance of jointly considering above- and belowground processes when evaluating ecosystem stability under global warming and extreme climate events. The stability of dominant species, rather than species richness and species asynchrony, was identified as a key predictor of ecosystem functional resistance and recovery, except for BNPP recovery. In addition, structural resistance of common species contributed strongly to the resistance changes in BNPP and NPP. Importantly, community structural resistance and recovery dominated the resistance and recovery of BNPP and NPP, but not for ANPP, suggesting the different mechanisms underlie the maintenance of stability of above- versus belowground productivity. This study is among the first to explain that warming modulates ecosystem stability in the face of extreme drought and lay stress on the need to investigate ecological stability at the community level for a more mechanistic understanding of ecosystem stability in response to climate extremes.
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Ecossistema , Pradaria , Secas , Clima , Mudança ClimáticaRESUMO
Grassland roots are fundamental to obtain the most limiting soil water and nitrogen (N) resources. However, this natural pattern could be significantly changed by recent co-occurrence of N deposition and extreme precipitations, likely with complex interactions on grassland root production and respiration. Despite this nonlinearity, we still know little about how extreme precipitation change nonlinearly regulates the responses of root respiration to N enrichment. Here, we conducted a 6-year experiment of N addition in an alpine meadow, coincidently experiencing extreme precipitations among experimental years. Our results demonstrated that root respiration showed divergent responses to N addition along with extreme precipitation changes among years. Under normal rainfall year, root respiration was significantly stimulated by N addition, whereas it was depressed under high or low water. Moreover, we revealed that both root biomass and traits (i.e. specific root length) were critical mechanisms in affecting root respiration response, but their relative importance changed with water condition. For example, specific root length and specific root respiration were more dominant than root biomass in determining root respiration response under low water, or vice versa. Overall, this study comprehensively reveals the nonlinearity of root respiration responses to the interactions of N enrichment and extreme water change. These new findings help to reconcile previously conflicting results that obtain in a specific episode of water gradient, with important implications for understanding grassland belowground carbon dynamics in facing combined N deposition and extreme precipitation events.
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Pradaria , Nitrogênio , Nitrogênio/análise , Biomassa , Solo , Carbono , Água , EcossistemaRESUMO
Extreme drought is found to cause a threshold response in photosynthesis in ecosystem level. However, the mechanisms behind this phenomenon are not well understood, highlighting the importance of revealing the drought thresholds for multiple leaf-level photosynthetic processes. Thus, we conducted a long-term experiment involving precipitation reduction and nitrogen (N) addition. Moreover, an extreme drought event occurred within the experimental period. We found the presence of drought thresholds for multiple leaf-level photosynthetic processes, with the leaf light-saturated carbon assimilation rate (Asat) displaying the highest threshold (10.76 v/v%) and the maximum rate of carboxylation by Rubisco (Vcmax) showing the lowest threshold (5.38 v/v%). Beyond the drought thresholds, the sensitivities of leaf-level photosynthetic processes to soil water content could be greater. Moreover, N addition lowered the drought thresholds of Asat and stomatal conductance (gs), but had no effect on that of Vcmax. Among species, plants with higher leaf K concentration traits had a lower drought threshold of Asat. Overall, this study highlights that leaf photosynthesis may be suppressed abruptly as soil water content surpasses the drought threshold. However, N enrichment helps to improve the resistance via delaying drought threshold response. These new findings have important implications for understanding the nonlinearity of ecosystem productivity response and early warning management in the scenario of combined extreme drought events and continuous N deposition.
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Ecossistema , Pradaria , Secas , Nitrogênio , Fotossíntese/fisiologia , Folhas de Planta/fisiologia , Água , SoloRESUMO
The design of semiconductor catalysts with excellent photocatalytic properties, stability, recyclability, and good separation for the treatment of polluted water is still challenging. In this paper, the ZnO/TiO2 nano-thin films were fabricated using the magnetron sputtering technique and then heating the underlying ZnO layer and the upper TiO2 layer for their respective optimal heating time, i. e. heating ZnO for 3 h and heating TiO2 for 2 h. The as-prepared films were characterized. The results show that the preferred growth of TiO2 grains along the [001] axis, relatively large specific surface area, and increased amounts of surface oxygen vacancies (OVs) were induced to the heterojunction catalysts through this optimized heating strategy, which boosts the photocatalytic activity of ZnO/TiO2 nano-film. The degradation experiment inndicates that the ciprofloxacin (CIP) removal efficiency can reach 97.3% in 2 h duration, which was higher than that of the samples annealed for the same periods. Meanwhile, the prepared ZnO/TiO2 photocatalytic film exhibited favorable stability of 95.5% degradation efficiency after the fourth run and general applicability for the photodegradation of various contantains, whih removed 99.5% of ofloxacin (OFX) and 77.6% of tetracycline (TC) in 2 h and 94.1% of Rhodamine B (RhB) in 1 h. This work is expected to yields a novel insight into the production of heterojunction photocatalysts with excellen ability for photocatalytic degradation of pollutants in the practical industry.
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Antibacterianos , Óxido de Zinco , Óxido de Zinco/química , Calefação , Titânio/químicaRESUMO
Large AI models, or foundation models, are models recently emerging with massive scales both parameter-wise and data-wise, the magnitudes of which can reach beyond billions. Once pretrained, large AI models demonstrate impressive performance in various downstream tasks. A prime example is ChatGPT, whose capability has compelled people's imagination about the far-reaching influence that large AI models can have and their potential to transform different domains of our lives. In health informatics, the advent of large AI models has brought new paradigms for the design of methodologies. The scale of multi-modal data in the biomedical and health domain has been ever-expanding especially since the community embraced the era of deep learning, which provides the ground to develop, validate, and advance large AI models for breakthroughs in health-related areas. This article presents a comprehensive review of large AI models, from background to their applications. We identify seven key sectors in which large AI models are applicable and might have substantial influence, including: 1) bioinformatics; 2) medical diagnosis; 3) medical imaging; 4) medical informatics; 5) medical education; 6) public health; and 7) medical robotics. We examine their challenges, followed by a critical discussion about potential future directions and pitfalls of large AI models in transforming the field of health informatics.
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Informática Médica , Robótica , Humanos , Biologia Computacional , Imaginação , Saúde PúblicaRESUMO
Pituitary tumor-transforming gene 1 (PTTG1) is overexpressed in various types of tumors and functions as an oncogene; it could also be a potential target in tumor therapy. Meanwhile, the high mortality of pancreatic adenocarcinoma (PAAD) largely depends on the limited effectiveness of therapy. Based on the promising potential of PTTG1 in cancer treatment, we explored the influence of PTTG1 on the treatment of PAAD in this study. The Cancer Genome Atlas Program (TCGA) data showed that higher expression of PTTG1 was associated with higher clinical stages and worse prognosis of pancreatic cancer. In addition, the CCK-8 assay showed that the IC50 of gemcitabine and 5-fluorouracil (5-FU) was increased in BxPC-3-PTTG1high and MIA PaCa-2-PTTG1high cells. The TIDE algorithm indicated that the immune checkpoint blockades' (ICBs) efficiency is poor in the PTTG1 high group. Furthermore, we found that the efficiency of OAd5 was enhanced in BxPC-3-PTTG1high and MIA PaCa-2-PTTG1high cells and poor in BxPC-3-PTTG1low and MIA PaCa-2-PTTG1low cells. We used the OAd5 expressing GFP for transduction. As a result, the fluorescence intensity was enhanced in BxPC-3-PTTG1high and MIA PaCa-2-PTTG1high cells and decreased in BxPC-3-PTTG1low and MIA PaCa-2-PTTG1low cells 24 h after OAd5 transduction. The fluorescence intensity indicated that PTTG1 increased OAd5 entry. The flow cytometry assay showed that OAd5 receptor CXADR expression was enhanced by PTTG1. PTTG1 failed to further enhance OAd5 transduction in the case of CXADR knockdown. In summary, PTTG1 enhanced OAd5 transduction into pancreatic cancer cells by increasing CXADR expression on the cell surface.
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Adenocarcinoma , Neoplasias Pancreáticas , Humanos , Neoplasias Pancreáticas/terapia , Adenocarcinoma/terapia , Adenoviridae , Linhagem Celular Tumoral , Moléculas de Adesão Celular , Neoplasias PancreáticasRESUMO
Extreme climate events, such as severe droughts and heavy rainfall, have profound impacts on the sustainable provision of ecosystem functions and services. However, how N enrichment interacts with discrete extreme climate events to affect ecosystem functions is largely unknown. Here, we investigated the responses of the temporal stability (i.e., resistance, recovery, and resilience) of aboveground net primary productivity (ANPP) in an alpine meadow to extreme dry and wet events under six N addition treatments (0, 2, 4, 8, 16, 32 g N m-2 year-1). We found that N addition had contrasting effects on the responses of ANPP to the extreme dry versus wet events, which resulted in no overall significant effects on ANPP stability across 2015-2019. Specifically, high N addition rates reduced the stability, resistance, and resilience of ANPP in response to extreme drought, whereas medium N addition rates increased ANPP stability and recovery in response to the extreme wet event. The main mechanisms underlying the response of ANPP to extreme drought and wet events were discrepant. Species richness, asynchrony, and dominant species resistance contributed most to the reduction of ANPP resistance to extreme drought, while species asynchrony and dominant and common species resilience contributed most to the decrease of ANPP resilience from extreme drought with N enrichment. The ANPP recovery from the extreme wet event was mainly explained by dominant and common species recovery. Our results provide strong evidence that N deposition mediates ecosystem stability in response to extreme dry and wet events in different ways and modulates the provisioning of grassland ecosystem functions under increasing extreme climate events.
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Clima , Ecossistema , Secas , PradariaRESUMO
The responses of soil nitrogen (N) transformations to climate change are crucial for biome productivity prediction under global change. However, little is known about the responses of soil gross N transformation rates to drought gradient. Along an aridity gradient across the 2700 km transect of drylands on the Qinghai-Tibetan Plateau, this study measured three main soil gross N transformation rates in both topsoil (0-10 cm) and subsoil (20-30 cm) using the laboratorial 15 N labeling. The relevant soil abiotic and biotic variables were also determined. The results showed that gross N mineralization and nitrification rates steeply decreased with increasing aridity when aridity was less than 0.5 but just slightly decreased with increasing aridity when aridity was larger than 0.5 at both soil layers. In topsoil, the decreases of the two gross rates were accompanied by the similar decreased patterns of soil total N content and microbial biomass carbon with increasing aridity (p < .05). In subsoil, although the decreased pattern of soil total N with increasing aridity was still similar to the decreases of the two gross rates (p < .05), microbial biomass carbon did not change (p > .05). Instead, bacteria and ammonia oxidizing archaea abundances decreased with increasing aridity when aridity was larger than 0.5 (p < .05). With an aridity threshold of 0.6, gross N immobilization rate increased with increasing aridity in wetter region (aridity < 0.6) accompanied with an increased bacteria/fungi ratio, but decreased with increasing aridity in drier region (aridity > 0.6) where mineral N and microbial biomass N also decreased at both soil layers (p < .05). This study provided new insight to understand the differential responses of soil N transformation to drought gradient. The threshold responses of the gross N transformation rates to aridity gradient should be noted in biogeochemical models to better predict N cycling and manage land in the context of global change.
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Nitrogênio , Solo , Solo/química , Nitrogênio/análise , Ecossistema , Nitrificação , Bactérias , Microbiologia do Solo , CarbonoRESUMO
Restrained by uncontrollable dehydrogenation process, the target products of methane direct conversion would suffer from an inevitable overoxidation, which is deemed as one of the most challenging issues in catalysis. Herein, based on the concept of a hydrogen bonding trap, we proposed a novel concept to modulate the methane conversion pathway to hinder the overoxidation of target products. Taking boron nitride as a proof-of-concept model, for the first time it is found that the designed N-H bonds can work as a hydrogen bonding trap to attract electrons. Benefitting from this property, the N-H bonds on the BN surface rather than C-H bonds in formaldehyde prefer to cleave, greatly suppressing the continuous dehydrogenation process. More importantly, formaldehyde will combine with the released protons, which leads to a proton rebound process to regenerate methanol. As a result, BN shows a high methane conversion rate (8.5 %) and nearly 100 % product selectivity to oxygenates under atmospheric pressure.
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Elucidating the effects underlying soil organic carbon (SOC) variation is imperative for ascertaining the potential drivers of mitigating climate change. However, the drivers of variations in various SOC fractions (e.g., macroaggregate C, microaggregate C, and silt and clay C) at different soil depths remain poorly understood. Here, we investigated the effects and relative contributions of climatic, plant, edaphic, and microbial factors on soil aggregate C between the topsoil (0-10 cm) and subsoil (20-30 cm) across alpine grasslands on the Tibetan Plateau. Results showed that the C content of macroaggregates, microaggregates, and silt and clay fractions in the topsoil was 128.6 %, 49.6 %, and 242.4 % higher than that in the subsoil, respectively. Overall, plant properties were the most determinants controlling soil macroaggregate, microaggregate, and silt + clay associated C for both two soil depths, accounting for 32.2 %, 37.4 %, and 38.8 % of the variation, respectively, followed by edaphic, microbial, and climatic factors. The aggregate C of both soil depths was significantly related with the climatic, plant, edaphic, and microbial factors, but the relative importance of these determinants was soil-depth dependent. Specifically, the effects of plant root biomass and microbial (e.g., microbial biomass carbon and fungal diversity index) factors on each aggregate C weakened with soil depth, but the importance of edaphic factors (e.g., clay content, pH, and bulk density) strengthened with soil depth, except for the weakened effect of bulk density on the microaggregate C. And the effects of climatic factor (e.g., mean annual precipitation) on macroaggregate and microaggregate C increased with soil depth. Our results highlight differential drivers and their impacts on soil aggregate C between the topsoil and subsoil, which benefits biogeochemical models for more accurately forecasting soil C dynamics and its feedbacks to environmental changes.
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Pradaria , Solo , Solo/química , Tibet , Carbono/análise , Argila , PlantasRESUMO
Eutrophication generally promotes but destabilizes grassland productivity. Under eutrophication, plants tend to decrease biomass allocation to roots but increase aboveground allocation and light limitation, likely affecting community stability. However, it remains unclear to understand how shifting plant biomass allocation and light limitation regulate grassland stability in response to eutrophication. Here, using a 5-yr multiple nutrient addition experiment in an alpine meadow, we explored the role of changes in plant biomass allocation and light limitation on its community stability under eutrophication as well as traditionally established mechanisms (i.e., plant Shannon diversity, species asynchrony and grass subcommunity stability). Our results showed that nitrogen (N) addition, rather than phosphorus (P) or potassium (K) addition, significantly reduced the temporal stability of the alpine meadow. In accordance with previous studies, we found that N addition decreased plant Shannon diversity, species asynchrony and grass subcommunity stability, further destabilizing meadow community productivity. In addition, we also found the decrease in biomass allocation to belowground by N addition, further weakening its community stability. Moreover, this shifts in plant biomass allocation from below- to aboveground, intensifying plant light limitation. Further, the light limitation reduced plant species asynchrony, which finally weakened its community stability. Overall, in addition to traditionally established mechanisms, this study highlights the role of plant biomass allocation shifting from belowground to aboveground in determining grassland community stability. These "unseen" mechanisms might improve our understanding of grassland stability in the context of ongoing eutrophication.
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Pradaria , Poaceae , Biomassa , Plantas , Eutrofização , Nitrogênio/análise , Solo , EcossistemaRESUMO
Plant and microbial diversity are key to determine ecosystem functioning. Despite the well-known role of local-scale α diversity in affecting vegetation biomass, the effects of community heterogeneity (ß diversity) of plants and soil microbes on above- and belowground biomass (AGB and BGB) across contrasting environments still remain unclear. Here, we conducted a dryness-gradient transect survey over 3000 km across grasslands on the Tibetan Plateau. We found that plant ß diversity was more dominant than α diversity in maintaining higher levels of AGB, while soil fungal ß diversity was the key driver in enhancing BGB. However, these positive effects of plant and microbial ß diversity on AGB and BGB were strongly weakened by increasing climatic dryness, mainly because higher soil available phosphorus caused by increasing dryness reduced both plant and soil fungal ß diversities. Overall, these new findings highlight the critical role of above- and belowground ß diversity in sustaining grassland biomass, raising our awareness to the ecological risks of large-scale biotic homogenization under future climate change.
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Ecossistema , Plantas , Biomassa , Pradaria , Fósforo , Solo , Microbiologia do SoloRESUMO
BACKGROUND: Pseudomonas species are widely distributed in the human body, animals, plants, soil, fresh water, seawater, etc. Pseudomonas aeruginosa is one of the main pathogens involved in nosocomial infections. It can cause endocarditis, empyema, meningitis, septicaemia and even death. However, the Pseudomonas classification system is currently inadequate and not well established. RESULTS: In this study, the whole genomes of 103 Pseudomonas strains belonging to 62 species available in GenBank were collected and the specificity of the 16S-23S ribosomal RNA internal transcribed spacer (ITS) sequence was analysed. Secondary structures of ITS transcripts determining where the diversity bases were located were predicted. The alignment results using BLAST indicated that the ITS sequence is specific for most species in the genus. The remaining species were identified by additional frequency analyses based on BLAST results. A double-blind experiment where 200 ITS sequences were randomly selected indicated that this method could identify Pseudomonas species with 100% sensitivity and specificity. In addition, we applied a universal primer to amplify the Pseudomonas ITS of DNA extracts from fish samples with next-generation sequencing. The ITS analysis results were utilized to species-specifically identify the proportion of Pseudomonas species in the samples. CONCLUSIONS: The present study developed a species-specific method identification and classification of Pseudomonas based on ITS sequences combined NGS. The method showed its potential application in other genera.
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Pseudomonas , RNA Ribossômico 23S , Animais , DNA Bacteriano/genética , DNA Espaçador Ribossômico/genética , Genes de RNAr , Sequenciamento de Nucleotídeos em Larga Escala , Humanos , Pseudomonas/genética , RNA Ribossômico 16S/genética , RNA Ribossômico 23S/genética , Análise de Sequência de DNARESUMO
Aims: Leaf chlorophyll (Chl) is a fundamental component and good proxy for plant photosynthesis. However, we know little about the large-scale patterns of leaf Chl and the relative roles of current environment changes vs. plant evolution in driving leaf Chl variations. Locations: The east to west grassland transect of the Tibetan Plateau. Methods: We performed a grassland transect over 1,600 km across the Tibetan Plateau, measuring leaf Chl among 677 site-species. Results: Leaf Chl showed a significantly spatial pattern across the grasslands in the Tibetan Plateau, decreasing with latitude but increasing with longitude. Along with environmental gradient, leaf Chl decreased with photosynthetically active radiation (PAR), but increased with water availability and soil nitrogen availability. Furthermore, leaf Chl also showed significant differences among functional groups (C4 > C3 species; legumes < non-legume species), but no difference between annual and perennial species. However, we surprisingly found that plant evolution played a dominant role in shaping leaf Chl variations when comparing the sum and individual effects of all the environmental factors above. Moreover, we revealed that leaf Chl non-linearly decreased with plant evolutionary divergence time. This well-matches the non-linearly increasing trend in PAR or decreasing trend in temperature during the geological time-scale uplift of the Tibetan Plateau. Main Conclusion: This study highlights the dominant role of plant evolution in determining leaf Chl variations across the Tibetan Plateau. Given the fundamental role of Chl for photosynthesis, these results provide new insights into reconsidering photosynthesis capacity in alpine plants and the carbon cycle in an evolutionary view.
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In the present study, we utilized 16S rRNA sequencing to uncover the impacts of non-pelleted (HG) or high-grain pelleted (HP) diets on the microbial structure and potential functions of digesta- and mucosa-associated microbiota in the jejunum of Hu sheep. Here, we randomly assigned 15 healthy male Hu sheep into three groups and fed the control diets (CON), HG, and HP diets, respectively. The experiment period was 60 days. The HP diets had the same nutritional ingredients as the HG diets but in pelleted form. At the finish of the experiment, the jejunal digesta and mucosa were gathered for microbial sequencing. The results of PCoA and PERMANOVA showed that different dietary treatments had significant impact (p < 0.05) on digesta- and mucosa-associated microbiota in the jejunum of Hu sheep. For specific differences, HG diets significantly increased (p < 0.05) the abundance of some acid-producing bacteria in both jejunal digesta (Bifidobacterium, OTU151, and OTU16) and mucosa (Rikenellaceae RC9 gut group, and Bifidobacterium) of Hu sheep compared with the CON diets. Besides the similar effects of the HG diets (increased the acid-producing bacteria such as Olsenella, Pseudoramibacter, and Shuttleworthia), our results also showed that the HP diets significantly decreased (p < 0.05) the abundance of some pro-inflammatory bacteria in the jejunal digesta (Mogibacterium, and Marvinbryantia) and mucosa (Chitinophaga, and Candidatus Saccharimonas) of Hu sheep compared with the HG diets. Collectively, these findings contributed to enriching the knowledge about the effects of HG diets on the structure and function of intestinal microbiota in ruminants.