Advances in the Application of Black Phosphorus-Based Composite Biomedical Materials in the Field of Tissue Engineering.

Black Phosphorus (BP) is a new semiconductor material with excellent biocompatibility, degradability, and optical and electrophysical properties. A growing number of studies show that BP has high potential applications in the biomedical field. This article aims to systematically review the research progress of BP composite medical materials in the field of tissue engineering, mining BP in bone regeneration, skin repair, nerve repair, inflammation, treatment methods, and the application mechanism. Furthermore, the paper discusses the shortcomings and future recommendations related to the development of BP. These shortcomings include stability, photothermal conversion capacity, preparation process, and other related issues. However, despite these challenges, the utilization of BP-based medical materials holds immense promise in revolutionizing the field of tissue repair.

Dynamic Regulation of Lipid Droplet Biogenesis in Plant Cells and Proteins Involved in the Process.

Lipid droplets (LDs) are ubiquitous, dynamic organelles found in almost all organisms, including animals, protists, plants and prokaryotes. The cell biology of LDs, especially biogenesis, has attracted increasing attention in recent decades because of their important role in cellular lipid metabolism and other newly identified processes. Emerging evidence suggests that LD biogenesis is a highly coordinated and stepwise process in animals and yeasts, occurring at specific sites of the endoplasmic reticulum (ER) that are defined by both evolutionarily conserved and organism- and cell type-specific LD lipids and proteins. In plants, understanding of the mechanistic details of LD formation is elusive as many questions remain. In some ways LD biogenesis differs between plants and animals. Several homologous proteins involved in the regulation of animal LD formation in plants have been identified. We try to describe how these proteins are synthesized, transported to the ER and specifically targeted to LD, and how these proteins participate in the regulation of LD biogenesis. Here, we review current work on the molecular processes that control LD formation in plant cells and highlight the proteins that govern this process, hoping to provide useful clues for future research.

Arabidopsis SRPKII family proteins regulate flowering via phosphorylation of SR proteins and effects on gene expression and alternative splicing.

Alternative splicing of pre-mRNAs is crucial for plant growth and development. Serine/arginine-rich (SR) proteins are a conserved family of RNA-binding proteins that are critical for both constitutive and alternative splicing. However, how phosphorylation of SR proteins regulates gene transcription and alternative splicing during plant development is poorly understood. We found that the Arabidopsis thaliana L. SR protein-specific kinase II family proteins (SRPKIIs) play an important role in plant development, including flowering. SRPKIIs regulate the phosphorylation status of a subset of specific SR proteins, including SR45 and SC35, which subsequently mediates their subcellular localization. A phospho-dead SR45 mutant inhibits the assembly of the apoptosis-and splicing-associated protein complex and thereby upregulates the expression of FLOWERING LOCUS C (FLC) via epigenetic modification. The splicing efficiency of FLC introns was significantly increased in the shoot apex of the srpkii mutant. Transcriptomic analysis revealed that SRPKIIs regulate the alternative splicing of c. 400 genes, which largely overlap with those regulated by SR45 and SC35-SCL family proteins. In summary, we found that Arabidopsis SRPKIIs specifically affect the phosphorylation status of a subset SR proteins and regulate the expression and alternative splicing of FLC to control flowering time.

Ultrasound-guided adaptive photoacoustic tomography.

Image formation in photoacoustic tomography (PAT) is generally based on the assumption that biological tissues are acoustically homogeneous. However, this does not hold, especially when strongly heterogeneous tissues, such as bones and air cavities, are present. Tissue heterogeneity can cause acoustic reflection, refraction, and scattering at interfaces, which may create distortions and artifacts in final images. To mitigate this problem, we propose an adaptive photoacoustic (PA) image reconstruction method based on prior structural information of an acoustically heterogeneous region extracted from ultrasound images. The method works in three steps: acoustic heterogeneity identification via ultrasound imaging; acoustically heterogeneous region segmentation; and adaptive time-domain raw data truncation and image reconstruction. The data truncation is based on a variable cutoff time, which can be adaptively determined according to the relative position of a transducer and an acoustically heterogeneous region. Numerical and in vivo experimental imaging results of human fingers demonstrate that the proposed ultrasound-guided adaptive image reconstruction method can effectively suppress acoustic heterogeneity-induced artifacts and substantially improve image quality. This work provides a practical way to mitigate the influence of acoustic heterogeneity in PAT.

Dissecting the Molecular Regulation of Natural Variation in Growth and Senescence of Two Eutrema salsugineum Ecotypes.

Salt cress (Eutrema salsugineum, aka Thellungiella salsuginea) is an extremophile and a close relative of Arabidopsis thaliana. To understand the mechanism of selection of complex traits under natural variation, we analyzed the physiological and proteomic differences between Shandong (SD) and Xinjiang (XJ) ecotypes. The SD ecotype has dark green leaves, short and flat leaves, and more conspicuous taproots, and the XJ ecotype had greater biomass and showed clear signs of senescence or leaf shedding with age. After 2-DE separation and ESI-MS/MS identification, between 25 and 28 differentially expressed protein spots were identified in shoots and roots, respectively. The proteins identified in shoots are mainly involved in cellular metabolic processes, stress responses, responses to abiotic stimuli, and aging responses, while those identified in roots are mainly involved in small-molecule metabolic processes, oxidation-reduction processes, and responses to abiotic stimuli. Our data revealed the evolutionary differences at the protein level between these two ecotypes. Namely, in the evolution of salt tolerance, the SD ecotype highly expressed some stress-related proteins to structurally adapt to the high salt environment in the Yellow River Delta, whereas the XJ ecotype utilizes the specialized energy metabolism to support this evolution of the short-lived xerophytes in the Xinjiang region.

Full-Length Transcriptome Sequencing Reveals the Impact of Cold Stress on Alternative Splicing in Quinoa.

Quinoa is a cold-resistant and nutrient-rich crop. To decipher the cold stress response of quinoa, the full-length transcriptomes of the cold-resistant quinoa variety CRQ64 and the cold-sensitive quinoa variety CSQ5 were compared. We identified 55,389 novel isoforms and 6432 novel genes in these transcriptomes. Under cold stress, CRQ64 had more differentially expressed genes (DEGs) and differentially alternative splicing events compared to non-stress conditions than CSQ5. DEGs that were specifically present only in CRQ64 were significantly enriched in processes which contribute to osmoregulation and ROS homeostasis in plants, such as sucrose metabolism and phenylpropanoid biosynthesis. More genes with differential alternative splicing under cold stress were enriched in peroxidase functions in CRQ64. In total, 5988 transcription factors and 2956 long non-coding RNAs (LncRNAs) were detected in this dataset. Many of these had altered expression patterns under cold stress compared to non-stress conditions. Our transcriptome results demonstrate that CRQ64 undergoes a wider stress response than CSQ5 under cold stress. Our results improved the annotation of the quinoa genome and provide new insight into the mechanisms of cold resistance in quinoa.

[Analysis of ZEB2 gene variation in two patients with Mowat-Wilson syndrome].

OBJECTIVE: To identify pathogenic variants in two patients with suspected for Mowat-Wilson syndrome (MWS). METHODS: Genomic DNA was extracted from peripheral blood samples of the patients and his family members, and gene variants were analysis by Trio-whole exome sequences and copy number variation sequencing. RESULTS: Patient 1 was found to carried a de novo heterozygous c.2769C>A (p.Y923*) nonsense variant of ZEB2 gene. The variant was not found in his healthy parents and sister. Patient 2 carried a de novo heterozygous frameshift variant of the ZEB2 gene, namely c.315delC (p.A105Afs*3), which has not been previously reported. Both variants were predicted to be pathogenic and can lead to premature occurrence of stop codons. CONCLUSION: The heterozygous c.2769C>A (p.Y923*) and c.315delC (p.A105Afs*3) variants of the ZEB2 gene probably underlay the pathogenesis in the two patients. Gene testing has facilitated confirmation of the diagnosis and genetic counselling.

Switchable generation of a sub-200 fs dissipative soliton and a noise-like pulse in a normal-dispersion Tm-doped mode-locked fiber laser.

We report on the switchable generation of a dissipative soliton (DS) pulse and a noise-like pulse (NLP) in an all-fiberized Tm-doped fiber laser in the normal-dispersion region. Mode-locking operation is achieved through a nonlinear polarization rotation component, and the cavity dispersion is compensated using ultra-high numerical aperture (UHNA4) fiber that is easy to integrate and low in cost. At a pump threshold of 510 mW, DS operation can first be achieved without additional filter. The 3 dB spectrum bandwidth of the DS pulse is greater than 50 nm, and the duration of the de-chirped pulse is 193 fs. By increasing the pump power to 880 mW, the mode-locking state can evolve into NLP operation with proper cavity polarization state. The 3 dB spectrum bandwidth and duration of de-chirped coherence spike are 105.6 nm and 121 fs, respectively. Meanwhile, ultra-broadband NLP (over 150 nm considering 3 dB spectrum width) can also be observed with the appropriate cavity parameters. All the proposed pulse patterns present good capacity for achieving narrow pulse width and withstanding high pulse energy.

Self-organized structures of bound states in a 2 µm dispersion-managed mode-locked fiber laser.

We report on the experimental generation of various self-organized structures of bound states in a near zero-dispersion mode-locked fiber laser. When the pump power is fixed at 492 mW, appropriately adjusting polarization controllers, the switching of the cavity feedback results in the evolution from the single pulse to the dispersion-managed soliton (i.e., stretched-pulse) pair. With the increase of pump power, bound states composed of more than two pulses can also be observed. Our results of the self-organized structures might enlarge the data-carrying capacity of current fiber-optical communication systems and benefit the investigation of nonlinear dynamics of bound states in fiber lasers at 2 µm.

Observation of sub-400fs, wavelength-switchable stretched pulse and bound-state pulse in Tm-doped fiber laser.

We report on the experimental observation of wavelength-switchable stretched pulse and bound-state pulse in a dispersion-managed Tm-doped laser. At a pump power of 572 mW, a stretched pulse with a pulse duration of 389 fs can be first obtained at 1961 nm. By increasing the pump power and appropriately adjusting the cavity polarization state, the mode-locking wavelength can be switched from 1961 nm to 1980 nm caused by the birefringence filtering effect based on nonlinear polarization rotation, and the corresponding pulse duration is 371 fs. Meanwhile, loosely bound states of two pulses and three pules at 1980 nm can be observed with appropriate cavity parameters.

Analysis and evaluation of the performance between reciprocity and time delay in the atmospheric turbulence channel.

In order to better evaluate the relationship between reciprocity and time delay of the fiber receiving system in the atmospheric turbulence channel, a time-domain signal generation mathematical model is proposed for the first time. A numerical solution of Johnson SB probability density distribution (PDF) in time-domain is creatively given for evaluating the reciprocity of both communication ends, which relates to the normalized fluctuation variance of the light intensity and the Greenwood frequency. An experiment is then carried out for verifying the time-domain signal generation model and measuring reciprocity. It shows that the excellent fitting accuracy of Johnson SB PDF signal generation model is first experimentally verified. It also indicates that the system reciprocity is improved by 10% after eliminating the system time delay. Meanwhile, the relationship between time delay and reciprocity under different atmospheric environments are analyzed and the relationship between time delay and system reciprocity at different Greenwood frequencies are discussed. This work provides a time parameter reference for the design of adaptive system and free-space optical (FSO) communication system.

Free-space transmission system in a tunable simulated atmospheric turbulence channel using a high-repetition-rate broadband fiber laser.

We demonstrate free-space transmission based on a broadband fiber laser at 16 Gbit/s over a simulated atmospheric turbulence channel. The broadband laser pulse is part of a supercontinuum generated by a homemade picosecond laser based on Raman gain soliton compression pumping a segment of highly nonlinear fiber. The scintillation indices, eye patterns, and bit error rates of transmission based on the broadband laser and a narrow-linewidth laser are compared. The results show a 29.5% reduction in the scintillation index and sensitivity of -28.6 dBm at the forward error correction limit, which has a 2.9 dB improvement compared with the narrow-linewidth system. It is feasible to use broadband lasers as carriers combining optical time division multiplexing as a multiplexing method to improve the communication performance under weak atmospheric turbulent conditions.

The Arabidopsis catalase triple mutant reveals important roles of catalases and peroxisome-derived signaling in plant development.

Hydrogen peroxide (H2 O2 ) is generated in many metabolic processes. As a signaling molecule, H2 O2 plays important roles in plant growth and development, as well as environmental stress response. In Arabidopsis, there are three catalase genes, CAT1, CAT2, and CAT3. The encoded catalases are predominately peroxisomal proteins and are critical for scavenging H2 O2 . Since CAT1 and CAT3 are linked on chromosome 1, it has been almost impossible to generate cat1/3 and cat1/2/3 mutants by traditional genetic tools. In this study, we constructed cat1/3 double mutants and cat1/2/3 triple mutants by CRISPR/Cas9 to investigate the role of catalases. The cat1/2/3 triple mutants displayed severe redox disturbance and growth defects under physiological conditions compared with wild-type and the cat2/3 double mutants. Transcriptome analysis showed a more profound transcriptional response in the cat1/2/3 triple mutants compared to the cat2/3 mutants. These differentially expressed genes are involved in plant growth regulation as well as abiotic and biotic stress responses. In addition, expression of OXI1 (OXIDATIVE SIGNAL INDUCIBLE 1) and several MAPK cascade genes were changed dramatically in the catalase triple mutant, suggesting that H2 O2 produced in peroxisomes could serve as a peroxisomal retrograde signal.

A new ferulic acid ester from Rhodiola wallichiana var. cholaensis (Crassulaceae).

A new ferulic acid ester, 6-feruloyloxyhexanoic acid (1), was isolated along with 10 known ones (2-11), from the concentrated water extract of Rhodiola wallichiana var. cholaensis. Their chemical structures were elucidated on the basis of extensive spectroscopic methods including Two-dimensional nuclear magnetic resonance (2D NMR) experiments. Compound 3 was isolated from this plant for the first time. The protective effects against H2O2-induced myocardial cell injury in cultured H9c2 cells were also evaluated. Compounds 1, 5 and 7-11 provided significant protective effects on H2O2-induced H9c2 cells injury at the concentration of 25 µg/mL. And the protective effects of compound 1 was also investigated by the oxygen-glucose deprivation/reperfusion (OGD/R) tests.

Qualitative and quantitative analysis of major constituents from Dazhu Hongjingtian capsule by UPLC/Q-TOF-MS/MS combined with UPLC/QQQ-MS/MS.

In this work, a sensitive and efficient method was established and validated for qualitative and quantitative analysis of major bioactive constituents in Dazhu Hongjingtian capsule by liquid chromatography tandem mass spectrometry. A total of 32 compounds were tentatively identified using ultra-performance liquid chromatography coupled with quadrupole time-of-flight mass spectrometry. Furthermore, 12 constituents, namely gallic acid, 3,4-dihydroxybenzoic acid, salidroside, p-coumaric acid-4-O-ß-d-glucopyranoside, bergeninum, 4-hydroxybenzoic acid, 4-hydroxyphenylacetic acid, syringate, 6''-O-galloylsalidroside, rhodiosin, rhodionin and kaempferol-7-O-α-l-rhamnoside, were simultaneously quantified by the developed ultra-performance liquid chromatography coupled with a triple quadrupole mass spectrometry method in 9 min. All of them were analyzed on an Agilent ZorBax SB-C18 column (3.0 × 100 mm, 1.8 µm) with linear gradient elution of methanol-0.1% formic acid water. The proposed method was applied to analyze three batches of samples with acceptable linearity (R, 0.9979-0.9997), precision (RSD, 1.3-4.7%), repeatability (RSD, 1.7-4.9%), stability (RSD, 2.2-4.9%) and recovery (RSD, 0.6-4.4%) of the 12 compounds. As a result, the analytical method possessing high throughput and sensitivity is suitable for the quality control of Dazhu Hongjingtian capsule.

Identification of cardioprotective agents from traditional Chinese medicine against oxidative damage.

Reactive oxygen species are damaging to cardiomyocytes. H9c2 cardiomyocytes are commonly used to study the cellular mechanisms and signal transduction in cardiomyocytes, and to evaluate the cardioprotective effects of drugs following oxidative damage. The present study developed a robust, automated high throughput screening (HTS) assay to identify cardioprotective agents from a traditional Chinese medicine (TCM) library using a H2O2­induced oxidative damage model in H9c2 cells. Using this HTS format, several hits were identified as cardioprotective by detecting changes to cell viability using the cell counting kit (CCK)­8 assay. Two TCM extracts, KY­0520 and KY­0538, were further investigated. The results of the present study demonstrated that treatment of oxidatively damaged cells with KY­0520 or KY­0538 markedly increased the cell viability and superoxide dismutase activity, decreased lactate dehydrogenase activity and malondialdehyde levels, and inhibited early growth response­1 (Egr­1) protein expression. The present study also demonstrated that KY­0520 or KY­0538 treatment protected H9c2 cells from H2O2­induced apoptosis by altering the Bcl-2/Bax protein expression ratio, and decreasing the levels of cleaved caspase­3. In addition, KY­0520 and KY­0538 reduced the phosphorylation of ERK1/2 and p38­MAPK proteins, and inhibited the translocation of Egr­1 from the cytoplasm to nucleus in H2O2-treated H9c2 cells. These findings suggested that oxidatively damaged H9c2 cells can be used for the identification of cardioprotective agents that reduce oxidative stress by measuring cell viabilities using CCK­8 in an HTS format. The underlying mechanism of the cardioprotective activities of KY­0520 and KY­0538 may be attributed to their antioxidative activity, regulation of Egr­1 and apoptosis­associated proteins, and the inhibition of ERK1/2, p38-MAPK and Egr-1 signaling pathways.

A new epidioxy-tetracyclic triterpenoid from Poria cocos Wolf.

A new epidioxy-tetracyclic triterpenoid, 3-(2-hydroxyacetoxy)-5α, 8α-peroxydehydrotumulosic acid (10), along with nine known compounds were isolated from Poria cocos Wolf (Polyporaceae). Their structures were determined by extensive spectroscopic analyses and comparison with literature data. The cytotoxicity of these compounds against human cancer cell lines MNK-45 was evaluated by MTT method.

A new flavonol glycoside from the florets of Carthamus tinctorius L.

One new flavonol glycoside, 6-hydroxykaempferol-3-O-ß-D-glucoside-7-O-ß-D-glucuronide (1), together with eight known flavonoids and three known quinochalcones, was isolated from the florets of Carthamus tinctorius L. Their structures were determined by extensive spectroscopic analyses. Their cardioprotective effects against H2O2-induced apoptosis in H9c2 cells were also evaluated; compounds 1, 2, 4-5, 7-10 and 12 provided significant protective effects on H2O2-induced H9c2 cells at the concentration of 25 µg/mL.

[Advance in research on chemical constituents from Notopterygii Rhizoma et Radix].

This paper summarized the recent 30 years research progress of the chemical constituents from Notopterygii Rhizoma et Radix. The chemical constituents from Notopterygii Rhizoma et Radix mainly consist of coumarins, polyene-polyacetylenes, sesquiterpenes, phenolic acids, while steroids and flavonoids were less reported. All constituents were confirmed and corrected through SciFinder. We also checked the Chinese name and English name and listed the CAS number of each compound. It can provide some guidelines for the research, development and utilization of Notopterygii Rhizoma et Radix in the future. Whether there is columbianin in the Notopterygii Rhizoma et Radix need to be further researched.

[Simultaneously preparation of grams of high purity tyrosol, crenulatin and salidroside from Rhodiola crenulata].

Tyrosol, crenulatin and salidroside are the main active constituents of Rhodiola crenulata, with extensive pharmacological activities. In the study, grams of high purity tyrosol, crenulatin and salidroside were simultaneously separated from R. crenulata by the first time. Firstly, R. crenulata was extracted by 70% alcohol. Then, with the yields of three compounds as the index, the macroporous resin was optimized. At last, grams of high purity tyrosol, crenulatin and salidroside were isolated by D-101 macroporousresin, purified by column chromatography. Detected by HPLC, the purity of three compounds were higher than 98%. This method has the advantages of simple process and operation, less dosage of organic solvent, highly yield and reproducibility, suitable for the simultaneously preparation of tyrosol, crenulatin and salidroside.