Evolutionary timescale of chalcidoid wasps inferred from over one hundred mitochondrial genomes.

Chalcidoidea is one of the most biologically diverse groups among Hymenoptera. Members are characterized by extraordinary parasitic lifestyles and extensive host ranges, among which several species attack plants or serve as pollinators. However, higher-level chalcidoid relationships remain controversial. Here, we performed mitochondrial phylogenomic analyses for major clades (18 out of 25 families) of Chalcidoidea based on 139 mitochondrial genomes. The compositional heterogeneity and conflicting backbone relationships in Chalcidoidea were assessed using various datasets and tree inferences. Our phylogenetic results supported the monophyly of 16 families and polyphyly of Aphelinidae and Pteromalidae. Our preferred topology recovered the relationship (Mymaridae+(Signiphoridae+Leucospidae)+(Chalcididae+((Perilampidae+Eucharitidae)+ remaining Chalcidoidea)))). The monophyly of Agaonidae and Sycophaginae was rejected, while the gall-associated ((Megastigmidae+Ormyridae)+(Ormocerinae+Eurytomidae)) relationship was supported in most results. A six-gene inversion may be a synapomorphy for most families, whereas other derived gene orders may introduce confusion in phylogenetic signals at deeper nodes. Dating estimates suggested that Chalcidoidea arose near the Jurassic/Cretaceous boundary and that two dynamic shifts in diversification occurred during the evolution of Chalcidoidea. We hypothesized that the potential codiversification between chalcidoids and their hosts may be crucial for accelerating the diversification of Chalcidoidea. Ancestral state reconstruction analyses supported the hypothesis that gall-inducers were mainly derived from parasitoids of gall-inducers, while other gall-inducers were derived from phytophagous groups. Taken together, these findings advance our understanding of mitochondrial genome evolution in the major interfamilial phylogeny of Chalcidoidea.

The genus Eurymeros Bhat (Hymenoptera, Braconidae, Alysiinae) newly recorded from China.

Background: Alysiinae Leach is a species-rich subfamily in Braconidae, of which several species play an important role in biological control. The monotypic genus Eurymerostumespiraculum Bhat, 1980 was discovered in Tibet and Yunnan provinces for the first time, representing the first record of the genus Eurymeros Bhat, 1980 (Braconidae, Alysiinae) in China. New information: The rare genus Eurymeros Bhat, 1980 (Braconidae, Alysiinae) and its only known species, E.tumespiraculum Bhat, 1980, are newly recorded from China. The morphological variation of the Chinese specimens is described and illustrated.

The mitochondrial genome of Telenomus remus (Hymenoptera: Platygastridae).

Telenomus remus Nixon, 1937 is an important parasitoid of lepidopterans. We sequenced the mitochondrial genome of T. remus, 15,500 bp in size, and possessed all 37 typical mitochondrial genes. A few tRNAs show gene arrangements compared with the ancestral gene order, mainly involving in the four tRNA clusters (E-C-Y-Q-I-A, D-K, N-F-S1-R, and M-V). The nucleotide sequences of 13 protein-coding genes of this sequence and another seven species from Platygastridae were used for phylogenetic analysis by MrBayes, with two species from Cynipoidea as an outgroup. The topology demonstrated that T. remus was most closely related to Telenomus sp.

Proteomic Analyses of Whitefly-Begomovirus Interactions Reveal the Inhibitory Role of Tumorous Imaginal Discs in Viral Retention.

In nature, plant viruses are mostly transmitted by hemipteran insects, such as aphids, leafhoppers, and whiteflies. However, the molecular mechanisms underlying the interactions between virus and insect vector are poorly known. Here, we investigate the proteomic interactions between tomato yellow leaf curl virus (TYLCV, genus Begomovirus, family Geminiviridae), a plant virus, and its vector whitefly (Bemisia tabaci) species complex. First, using a yeast two-hybrid system, we identified 15 candidate whitefly proteins interacting with the coat protein of TYLCV. GO and KEGG pathway analysis implicated that these 15 whitefly proteins are of different biological functions/processes mainly including metabolic process, cell motility, signal transduction, and response to stimulus. We then found that the whitefly protein tumorous imaginal discs (Tid), one of the 15 whitefly proteins identified, had a stable interaction with TYLCV CP in vitro, and the DnaJ_C domain of Tid301-499aa may be the viral binding site. During viral retention, the expression of whitefly protein Tid was observed to increase at the protein level, and feeding whiteflies with dsRNA or antibody against Tid resulted in a higher quantity of TYLCV in the whitefly body, suggesting the role of Tid in antiviral infection. Our data indicate that the induction of Tid following viral acquisition is likely a whitefly immune response to TYLCV infection.

The first mitochondrial genome of the living-fossil sawfly Macroxyela ferruginea (Hymenoptera: Xyelidae, Macroxyelinae).

The living-fossil sawfly Macroxyela ferruginea (Xyelidae: Macroxyelinae) was one of the oldest species of Hymenoptera. We sequenced the mitochondrial genome, 15,465 bp in size. All 37 typical mitochondrial genes were possessed. There is only one rearrangement of gene order, where trnM and trnQ were shuffled. We also found this order was shared with Xyela sp., which also belongs to family Xyelidae. The 13 protein-coding genes of this sequence and the other 10 species from eight superfamilies in Hymenoptera were all used for phylogenetic analysis by maximum likelihood (ML) analysis and Bayesian inference (BI), with Ascaloptynx appendiculatus from Neuroptera as an outgroup. The topology demonstrated that M. ferruginea was sister to Xyela sp., supporting that they belong to one family Xyelidae.

Silk-Fibroin-Assisted Cathodic Electrolytic Deposition of Calcium Phosphate for Biomedical Applications.

The biological responses of artificial biomaterials are affected strongly by its interfacial topography, especially from nano- to microscale. The structure controllability is essential for the design and synthesis of novel biomedical materials. Herein, the effect of soluble silk fibroin (SF) on the cathodic electrolytic deposition (ELD) behavior of octacalcium phosphate (OCP) coating is studied. It is observed that the addition of soluble SF does not change the inorganic phase of the coating (OCP), but it has a remarkable effect on the microstructure of the deposited coating. As a result, the OCP/SF composite coating possessed a micro/nano multilevel structure is finely constructed on titanium implant by using ELD technology. Such OCP/SF composite coating significantly promotes preosteoblast cells adhesion, spreading and proliferation. In general, effects have been made to produce an in-depth understanding of protein incorporated ELD technology to extend its application in the biomedical field. It provides a promising strategy to design and synthesize biomaterials with specific biomimetic structures and functions.

Mitochondrial phylogenomics of the Hymenoptera.

The insect order Hymenoptera presents marvelous morphological and ecological diversity. Higher-level hymenopteran relationships remain controversial, even after recent phylogenomic analyses, as their taxon sampling was limited. To shed light on the origin and diversification of Hymenoptera, in particular the poorly studied Parasitica, we undertook phylogenetic analyses of 40 newly and 43 previously sequenced mitochondrial genomes representing all major clades of Hymenoptera. Various Bayesian inferences using different data partitions and phylogenetic methods recovered similar phylogenetic trees with strong statistical support for almost all nodes. Novel findings of the mitogenomic phylogeny mainly affected the three infraorders Ichneumonomorpha, Proctotrupomorpha and Evaniomorpha, the latter of which was split into three clades. Basal relationships of Parasitica recovered Stephanoidea + (Gasteruptiidae + Aulacidae) as the sister group to Ichneumonomorpha + (Trigonalyoidea + Megalyroidea). This entire clade is sister to Proctotrupomorpha, and Ceraphronoidea + Evaniidae is sister to Aculeata (stinging wasps). Our divergence time analysis indicates that major hymenopteran lineages originated in the Mesozoic. The radiation of early apocritans may have been triggered by the Triassic-Jurassic mass extinction; all extant families were present by the Cretaceous.

The first two mitochondrial genomes of wood wasps (Hymenoptera: Symphyta): Novel gene rearrangements and higher-level phylogeny of the basal hymenopterans.

The Symphyta has long been recognized as a paraphyletic grade forming the base of the remaining Hymenopteran, and the superfamily relationships within Symphyta remain controversial. Here, the first two representative mitochondrial genomes from the superfamily Siricoidea and Xiphydrioidea (Hymenoptera: Symphyta) are obtained using next-generation sequencing. The complete mitochondrial genome of Xiphydria sp. is 16,482 bp long with an A + T content of 84.18% while the incomplete one of Tremex columba is 16,847 bp long and A + T content is 81.69%. All 37 typical mitochondrial genes are possessed in both species. The secondary structure of tRNAs and rRNAs for both species are successfully predicted. Compared with the ancestral organization, seven and five tRNA genes are rearranged in mitochondrial genomes of Tremex and Xiphydria, respectively, which are the most rearrangement events within Symphyta. The rearrangement patterns in Tremex and Xiphydria present in this study are all novel to the Symphyta. Phylogenetic relationships among the major lineages of Symphyta are reconstructed using mitochondrial genomes. Both maximum likelihood and Bayesian inference analyses highly support Symphyta is a paraphyletic grade, Xyeloidea + (Tenthredinoidea + (Pamphilioidea + (Xiphydrioidea + (Cephoidea + (Orussoidea + Apocrita))))).

Review of the genus Alysia Latreille (Hymenoptera, Braconidae, Alysiinae), with description of six new species from China.

Six new species of Alysia Latreille are described and illustrated from China, i.e., Alysia hebeiensis sp. n., A. macularis sp. n., A. melasoma sp. n., A. polita sp. n., A. sparsa sp. n., and A. stenopos sp. n. Also, six species are reported as new to China: Alysia incongrua Nees, 1834, A. lucia Haliday, 1838, A. lucicola Haliday, 1838, A. sirin Belokobylskij, 1998, A. umbrata Stelfox, 1941 and A. vladik Belokobylskij, 1998. A key to the known species of Alysia Latreille from China is provided.

The first two mitochondrial genomes of the family Aphelinidae with novel gene orders and phylogenetic implications.

Chalcidoidea is one of the most diverse group in Hymenoptera by possessing striking mitochondrial gene arrangement. By using next generation sequencing method, the first two nearly complete mitochondrial genomes in the family Aphelinidae (Insecta, Hymenopetra, Chalcidoidea) were obtained in this study. Almost all previously sequenced mitochondrial genome of Chalcidoidea species have a large inversion including six genes (atp6-atp8-trnD-trnK-cox2-trnL2-cox1) as compared with ancestral mitochondrial genome, but these two Encarsia mitochondrial genomes had a large inversion including nine genes (nad3-trnG-atp6-atp8-trnD-trnK-cox2-trnL2-cox1), which was only congruent with the species in the genus Nasonia. Moreover, we found that one shuffling changes (trnD and trnK) happened in the species E. obtusiclava but not in another species E. formosa within the same genus, of which such shuffling within the same genus at this region was only detected in Polisters within Insecta. Phylogenetic analysis displayed that different data matrix (13PCG+ 2 rRNA or 13 PCG) and inference methods (BI or ML) indicate the identical topology with high nodal supports that Aphelinidae formed a sister group with (Trichogrammatidae + Aganoidae) and the monophyly of Pteramalidae. Our results also indicated the validity of assembling and feasibility of next-generation technology to obtain the mitochondrial genomes of parasitic Hymenoptera.

An illustrated key to the genera and subgenera of the Alysiini (Hymenoptera, Braconidae, Alysiinae), with three genera new for China.

An illustrated key to the genera and subgenera of the Alysiini (Hymenoptera, Braconidae, Alysiinae) from China is presented. Three genera new for China are reported: Adelurola Strand, 1924, Anisocyrta Foerster, 1863, and Pentapleura Foerster, 1863. The total for China is 26 genera of Alysiini and an additional seven subgenera (excluding the nominal subgenera, which are included in the total of genera). The known Chinese species are listed under each genus and the biology is summarised. Separatatus sinicus (Zheng, Chen & Yang, 2012) and Grammospila eurys (Chen & Wu, 1994) are new combinations. Regetus Papp, 1999, and Adelphenaldis Fischer, 2003, are new synonyms of Eusynaldis Zaykov & Fischer, 1982. In addition, Eusynaldis Zaykov & Fischer and Synaldis Foerster, 1863, are treated as subgenera of Aspilota Foerster, 1863, and Dinotrema Foerster, 1863, respectively. An aberrant species of Separatatus Chen & Wu, 1994, S. parallelussp. n., is described from Yunnan and Hainan.