Assessing changes in the ecosystem service value in response to land use and land cover dynamics in Malawi.

Land use and land cover (LULC) changes are inevitable outcomes of socioeconomic changes and greatly affect ecosystem services. Our study addresses the critical gap in the existing literature by providing the first comprehensive national analysis of LULC changes and their impacts on ecosystem service values (ESVs) in Malawi. We assessed changes in ecosystem service values (ESVs) in response to LULC changes using the benefit transfer method in ArcGIS 10.6 software. Our findings revealed a significant increase in grasslands, croplands, and urban areas and a notable decline in forests, shrubs, wetlands, and water bodies. Grassland, cropland, and built-up areas expanded by 52%, 1%, and 23.2%, respectively. In contrast, permanent wetlands, barren land, and water bodies declined by 27.6%, 34.3%, and 1%, respectively. The ESV declined from US$90.87 billion in 2001 to US$85.60 billion in 2022, marking a 5.8% reduction. Provisioning services increased by 0.5% while regulating, supporting, and cultural ecosystem service functions declined by 12.2%, 3.16%, and 3.22%, respectively. The increase in provisioning services was due to the expansion of cropland. However, the loss of regulating, supporting, and cultural services was mainly due to the loss of natural ecosystems. Thus, environmental policy should prioritise the conservation and restoration of natural ecosystems to enhance the ESV of Malawi.

Ticks parasitizing cold-blooded animals from three different Brazilian biomes; with note for males of Amblyomma rotundatum.

Ticks parasitize a wide variety of wild animals, including amphibians and reptiles. In addition to the possibility of microorganism transmission to these hosts, ticks can also cause severe bleeding, and high parasitism can lead to death. Therefore, knowing the diversity of ticks parasitizing amphibians and reptiles is important for conservation and preservation measures for these vertebrates. In the present study, we report parasitism by ticks in amphibians and reptiles from different Brazilian biomes (Amazon, Caatinga, Cerrado and Atlantic Forest). Ticks were collected from amphibians and reptiles deposited from the Herpetological Collection of the Federal University of Maranhão (UFMA), São Luís (Maranhão State), the State University Santa Cruz (UESC), Ilhéus (Bahia State), and the Federal University of São Francisco Valley (Univasf), Petrolina (Pernambuco State). Additionally, ticks were collected from amphibians and reptiles captured and road-killed in the Amazon biome, at Maranhão and Amapá States. Specimens of ticks were photographed under a Zeiss stereomicroscope (5.1 zoom). Map with the locations were made using the Qgis program. Overall, 1973 specimens of amphibians and reptiles were examined. A total of 927 ticks were collected: 98 larvae, 421 nymphs and 408 adults. Six species of ticks were identified: Amblyomma rotundatum and Amblyomma dissimile the most frequent, and Amblyomma cajennense sensu stricto, Amblyomma sculptum, Amblyomma nodosum and Amblyomma humerale, occasionally. Surprisingly, a total of twelve males of A. rotundatum were collected. Here we report new records of association between cold-blooded animals and ticks and reinforce the absence of A. dissimile in the Caatinga, Cerrado and Atlantic Forest biomes. Additionally, we report new records of A. rotundatum males on reptiles in the Amazon biome. This last record allows us to speculate about a possible association of A. rotundatum males with reptiles and the Amazon biome.

Ecological transcriptomics reveals stress response pathways of a ground-herb species in a waterlogging gradient of Amazonian riparian forests.

Environmental stress is a fundamental facet of life and a significant driver of natural selection in the wild. Gene expression diversity may facilitate adaptation to environmental changes, without necessary genetic change, but its role in adaptive divergence remains largely understudied in Neotropical systems. In Amazonian riparian forests, species distribution is predominantly influenced by species' waterlogging tolerance. The flooding gradient delineates distinct wetland forest types, shaping habitats and species characteristics. Here we investigated the molecular basis of environmental stress response in a tropical ground-herb species (Ischnosiphon puberulus) to environmental variation in Amazonian riparian forests. We compared environmental variables and gene expression profiles from individuals collected in two forest types: Igapó and Terra firme in the Amazonian riparian forests. Predictable seasonal flooding poses a significant challenge in Igapó compared to Terra firme environments, with the former presenting higher water column height and longer flooding duration. Our findings suggest that contrasting environmental conditions related to flooding regimes are important drivers of population genetic differentiation and differential gene expression in I. puberulus. Enriched gene ontology terms highlight associations with environmental stresses, such as defence response, water transport, phosphorylation, root development, response to auxin, salicylic acid and oxidative stress. By uncovering key environmental stress response pathways conserved across populations, I. puberulus offers novel genetic insights into the molecular basis of plant reactions to environmental constraints found in flooded areas of this highly biodiverse neotropical ecosystem.

The impact of land-use changes and management intensification on bacterial communities in the last decade: a review.

In the last decade, advances in soil bacterial ecology have contributed to increasing agricultural production. Brazil is the world leading agriculture producer and leading soil biodiversity reservoir. Meanwhile, there is still a significant gap in the knowledge regarding the soil microscopic life and its interactions with agricultural practices, and the replacement of natural vegetation by agroecosystems is yet to be unfolded. Through high throughput DNA sequencing, scientists are now exploring the complexity of soil bacterial communities and their relationship with soil and environmental characteristics. This study aimed to investigate the progress of bacterial ecology studies in Brazil over the last 10 years, seeking to understand the effect of the conversion of natural vegetation in agricultural systems on the diversity and structure of the soil microbial communities. We conducted a systematic search for scientific publication databases. Our systematic search has matched 62 scientific articles from three different databases. Most of the studies were placed in southeastern and northern Brazil, with no records of studies about microbial ecology in 17 out of 27 Brazilian states. Out of the 26 studies that examined the effects of replacing natural vegetation with agroecosystems, most authors concluded that changes in soil pH and vegetation cover replacement were the primary drivers of shifts in microbial communities. Understanding the ecology of the bacteria inhabiting Brazilian soils in agroecosystems is paramount for developing more efficient soil management strategies and cleaner agricultural technologies.

A long-term prospecting study on giant viruses in terrestrial and marine Brazilian biomes.

The discovery of mimivirus in 2003 prompted the search for novel giant viruses worldwide. Despite increasing interest, the diversity and distribution of giant viruses is barely known. Here, we present data from a 2012-2022 study aimed at prospecting for amoebal viruses in water, soil, mud, and sewage samples across Brazilian biomes, using Acanthamoeba castellanii for isolation. A total of 881 aliquots from 187 samples covering terrestrial and marine Brazilian biomes were processed. Electron microscopy and PCR were used to identify the obtained isolates. Sixty-seven amoebal viruses were isolated, including mimiviruses, marseilleviruses, pandoraviruses, cedratviruses, and yaraviruses. Viruses were isolated from all tested sample types and almost all biomes. In comparison to other similar studies, our work isolated a substantial number of Marseillevirus and cedratvirus representatives. Taken together, our results used a combination of isolation techniques with microscopy, PCR, and sequencing and put highlight on richness of giant virus present in different terrestrial and marine Brazilian biomes.

Climate-driven shifts in the diversity of plants in the Neotropical seasonally dry forest: Evaluating the effectiveness of protected areas.

Given the current environmental crisis, biodiversity protection is one of the most urgent socio-environmental priorities. However, the effectiveness of protected areas (PAs), the primary strategy for safeguarding ecosystems, is challenged by global climate change (GCC), with evidence showing that species are shifting their distributions into new areas, causing novel species assemblages. Therefore, there is a need to evaluate PAs' present and future effectiveness for biodiversity under the GCC. Here, we analyzed changes in the spatiotemporal patterns of taxonomic and phylogenetic diversity (PD) of plants associated with the Neotropical seasonally dry forest (NSDF) under GCC scenarios. We modeled the climatic niche of over 1000 plant species in five representative families (in terms of abundance, dominance, and endemism) of the NSDF. We predicted their potential distributions in the present and future years (2040, 2060, and 2080) based on an intermediate scenario of shared socio-economic pathways (SSP 3.70), allowing species to disperse to new sites or constrained to the current distribution. Then, we tested if the current PAs network represents the taxonomic and phylogenetic diversities. Our results suggest that GCC could promote novel species assemblages with local responses (communities' modifications) across the biome. In general, models predicted losses in the taxonomic and phylogenetic diversities of all the five plant families analyzed across the distribution of the NSDF. However, in the northern floristic groups (i.e., Antilles and Mesoamerica) of the NSDF, taxonomic and PD will be stable in GCC projections. In contrast, across the NSDF in South America, some cores will lose diversity while others will gain diversity under GCC scenarios. PAs in some NSDF regions appeared insufficient to protect the NSDF diversity. Thus, there is an urgent need to assess how the PA system could be better reconfigured to warrant the protection of the NSDF.

Dada la actual crisis ambiental, la protección de la biodiversidad se presenta como una de las prioridades socio ambientales más urgentes. Sin embargo, la efectividad de las áreas protegidas (AP), la estrategia principal para salvaguardar los ecosistemas, se ve desafiada por el cambio climático global (CCG), con evidencia que muestra que las especies están desplazando sus distribuciones hacia nuevas áreas, provocando conjuntos de especies novedosos. Por lo tanto, es necesario evaluar la efectividad actual y futura de las AP para la biodiversidad bajo el CCG. En este contexto, analizamos cambios en los patrones espacio­temporales de diversidad taxonómica y filogenética de plantas asociadas al bosque estacionalmente seco neotropical (BES) bajo escenarios de CCG. Modelamos el nicho climático de más de 1,000 especies de plantas en cinco familias representativas (en términos de abundancia, dominancia y endemismo) del BES. Pronosticamos sus distribuciones potenciales en los años actuales y futuros (2040, 2060 y 2080) basándonos en un escenario intermedio de trayectorias socioeconómicas compartidas (SSP 3.70), permitiendo que las especies se dispersen a nuevos sitios o estén limitadas a la distribución actual. Luego, evaluamos si la red actual de AP representa las diversidades taxonómicas y filogenéticas. Nuestros resultados sugieren que el CCG podría promover conjuntos de especies novedosos con respuestas locales (modificaciones en las comunidades) en todo el bioma. En general, los modelos pronosticaron pérdidas en las diversidades taxonómicas y filogenéticas de las cinco familias de plantas analizadas en la distribución del BES. Sin embargo, en los grupos florísticos del norte (es decir, Antillas y Mesoamérica) del BSDN, la diversidad taxonómica y filogenética se mantendrá estable en las proyecciones de CCG. En cambio, en toda la región del BES en América del Sur, algunos núcleos perderán diversidad mientras que otros ganarán diversidad bajo escenarios de CCG. Algunas AP en regiones del BES parecen ser insuficientes para proteger la diversidad del bioma. Por lo tanto, es urgente evaluar cómo se podría reconfigurar mejor el sistema de AP para garantizar la protección del BES.

Mammal recovery inside and outside terrestrial protected areas.

Protected areas are a key component of global conservation, and the world is aiming to increase protected areas to cover 30% of land and water through the 30 × 30 Initiative under the Post-2020 Global Biodiversity Framework. However, factors affecting their success or failure in regard to promoting mammal population recovery are not well studied, particularly using quantitative approaches comparing across diverse taxa, biomes, and countries. To better understand how protected areas contribute to mammalian recovery, we conducted an analysis of 2706 mammal populations both inside and outside of protected areas worldwide. We calculated the annual percent change of mammal populations within and outside of terrestrial protected areas and examined the relationship between the percent change and a suite of human and natural characteristics including biome, region, International Union for Conservation of Nature (IUCN) protected area category, IUCN Red List classification, and taxonomic order. Our results show that overall mammal populations inside and outside of protected areas are relatively stable. It appears that Threatened mammals are doing better inside of protected areas than outside, whereas the opposite is true for species of least concern and Near Threatened species. We also found significant population increases in protected areas classified as category III and significant population decreases in protected and unprotected areas throughout Oceania. Our results demonstrate that terrestrial protected areas can be an important approach for mammalian recovery and conservation.

Life at the borderlands: microbiomes of interfaces critical to One Health.

Microbiomes are foundational components of the environment that provide essential services relating to food security, carbon sequestration, human health, and the overall well-being of ecosystems. Microbiota exert their effects primarily through complex interactions at interfaces with their plant, animal, and human hosts, as well as within the soil environment. This review aims to explore the ecological, evolutionary, and molecular processes governing the establishment and function of microbiome-host relationships, specifically at interfaces critical to One Health-a transdisciplinary framework that recognizes that the health outcomes of people, animals, plants, and the environment are tightly interconnected. Within the context of One Health, the core principles underpinning microbiome assembly will be discussed in detail, including biofilm formation, microbial recruitment strategies, mechanisms of microbial attachment, community succession, and the effect these processes have on host function and health. Finally, this review will catalogue recent advances in microbiology and microbial ecology methods that can be used to profile microbial interfaces, with particular attention to multi-omic, advanced imaging, and modelling approaches. These technologies are essential for delineating the general and specific principles governing microbiome assembly and functions, mapping microbial interconnectivity across varying spatial and temporal scales, and for the establishment of predictive frameworks that will guide the development of targeted microbiome-interventions to deliver One Health outcomes.

Morphological variations of auditory bullae in otomyine rodents (Rodentia: Otomyini) in southern African biomes.

Mammalian middle ear cavities differ from those of other taxa as they comprise three ossicles and in rodents, can be encapsulated by an auditory bulla. In small mammals, the middle ear cavity (bulla) was found to be enlarged in the desert-dwelling species; however, differences in bullar size could have been due to ancestry. In this study, we sampled seven species from three genera (Myotomys, Otomys, and Parotomys) of the African murid tribe Otomyini (laminated-toothed rats), and compared the bullar volumes and shapes between the otomyine species and within the species Myotomys unisulcatus. Photographs of museum skull specimens were taken from ventral and lateral views, and the volumes of the bullae were estimated digitally from the photographs. No sexual dimorphism in bullar volumes was found in any of the species. Corrected bullar volumes were significantly different between species and larger bullae were seen in individuals inhabiting regions with lower annual rainfall. Bullar shape (estimated using geometric morphometrics) was significantly different between the genera and the species. Parotomys have tympanic meatuses that face more anteriorly compared to both, Otomys and Myotomys. When comparing bullae within M. unisulcatus, those inhabiting regions with lower annual rainfall had significantly larger bullar volumes, but no significant difference was found in bullar shape between the regions. This study shows that otomyine rodents in more xeric habitats have different auditory structures to those inhabiting wetter habitats.

Groundwater is a hidden global keystone ecosystem.

Groundwater is a vital ecosystem of the global water cycle, hosting unique biodiversity and providing essential services to societies. Despite being the largest unfrozen freshwater resource, in a period of depletion by extraction and pollution, groundwater environments have been repeatedly overlooked in global biodiversity conservation agendas. Disregarding the importance of groundwater as an ecosystem ignores its critical role in preserving surface biomes. To foster timely global conservation of groundwater, we propose elevating the concept of keystone species into the realm of ecosystems, claiming groundwater as a keystone ecosystem that influences the integrity of many dependent ecosystems. Our global analysis shows that over half of land surface areas (52.6%) has a medium-to-high interaction with groundwater, reaching up to 74.9% when deserts and high mountains are excluded. We postulate that the intrinsic transboundary features of groundwater are critical for shifting perspectives towards more holistic approaches in aquatic ecology and beyond. Furthermore, we propose eight key themes to develop a science-policy integrated groundwater conservation agenda. Given ecosystems above and below the ground intersect at many levels, considering groundwater as an essential component of planetary health is pivotal to reduce biodiversity loss and buffer against climate change.

Soil freeze-thaw cycles affect spring phenology by changing phenological sensitivity in the Northern Hemisphere.

The use of frozen soil-vegetation feedback for predictive models is undergoing enormous changes under rapid climate warming. However, the influence of soil freeze-thaw (SFT) cycles on vegetation phenology and the underlying mechanisms remain poorly understood. By synthesizing a variety of satellite-derived data from 2002 to 2021 in the Northern Hemisphere (NH), we demonstrated a widespread positive correlation between soil thawing and the start of the growing season (SOS). Our results also showed that the SFT cycles had a significant impact on vegetation phenology mainly by altering the phenological sensitivities to daytime and nighttime temperatures, solar radiation and precipitation. Moreover, the effects of SFT cycles on the sensitivity of the SOS were more pronounced than those on the sensitivity of the end of the growing season (EOS) and the length of growing season (LOS). Furthermore, due to the degradation of frozen soil, the changes in phenological sensitivity in the grassland and tundra biomes were significantly larger than those in the forest. These findings highlighted the importance of incorporating the SFT as an intermediate process into process-based phenological models.

Jaguar conservation in the American continent: the role of protected landscape and human-impacted biomes

Introduction: Worldwide, expanding human activities continue to be a threat to many large-bodied species, including jaguars. As these activities continue, it is critical to understand how home range sizes will be impacted by human-modified landscapes. Objective: To evaluate the importance of protected and unprotected land on home-range size across their range. Methods: We used home range data from 117 jaguars in several habitat protection categories and human biome types. We used a Generalized Linear Mixed Model to test home range and spatial overlap with conservation categories and human biomes. Results: Most home-ranges were in Jaguar Conservation Units (62 %), followed by Protected Areas (21 %), Indigenous People's Lands (10 %) and Jaguar Movement Corridors (3 %), where 76 % of the jaguars lived inside one the first three conservation types. However, outside of conserved land, Rangeland, Cropland, Seminatural land and other human biomes were also important (24 % of the individuals). Jaguars in Rangeland, Cropland and Seminatural land had the largest home ranges. Conclusions: Although conservation land was dominant, human-impacted lands appear to play a considerable role in satisfying the spatial requirements of jaguars.

Introducción: A nivel mundial, la expansión de actividades humanas continúa teniendo un riesgo para muchas especies de cuerpo grande, tal como los jaguares. Conforme continúen estas actividades, es crucial entender el impacto de paisajes modificados sobre el tamaño de su territorio. Objetivo: Evaluar la importancia de terrenos protegidos y no protegidos sobre el tamaño de su territorio a lo largo de su rango. Métodos: Usamos datos de tamaño de los territorios de 117 jaguares en varias categorías de protección de hábitats y biomas humanos. Usamos un Modelo Mixto Lineal Generalizado para probar traslapes espaciales y de territorios con categorías de conservación y biomas humanos. Resultados: La mayoría de los territorios estaban en Unidades de Conservación de Jaguares (62 %), seguido por Áreas protegidas (21 %), Tierras de Pueblos Indígenas (10 %) y Corredores de Movimiento de Jaguares (3 %), en donde el 76 % de los jaguares vivían dentro de alguna de las primeras tres modalidades de conservación. Sin embargo, fuera de áreas protegidas, pastizales, tierras de cultivo, terrenos seminaturales y otros biomas humanos también fueron importantes (24 % de individuos). Jaguares en pastizales, tierras de cultivo, y terrenos seminaturales tuvieron territorios más grandes. Conclusiones: Aunque las áreas de conservación fueron dominantes, áreas con impacto humano parecieron jugar un rol considerable en satisfacer los requerimientos espaciales de los jaguares.

Proof of evidence of changes in global terrestrial biomes using historic and recent NDVI time series.

Climate change affects plant dynamics and functioning of terrestrial ecosystems. This study aims to investigate temporal changes in global vegetation coverage and biomes during the past three decades. We compared historic annual NDVI time series (1982, 1983, 1984 and 1985) with recent ones (2015, 2016, 2017 and 2018), captured from NOAA-AVHRR satellite observations. To correct the NDVI time series for missing data and outliers, we applied the Harmonic Analysis of Time Series (HANTS) algorithm. The NDVI time series were decomposed in their significant amplitude and phase given their periodic fluctuation, except for ever green vegetation. Our findings show that the average NDVI values in most biomes have increased significantly (F-value<0.01) by 0.05 ndvi units over during the past three decades, except in tundra, and deserts and xeric shrublands. The highest rates of change in the harmonic components were observed in the northern hemisphere, mainly above 30° latitude. Worldwide, the mean annual phase reduced by 9° corresponding to a 9 days shift in the beginning of the growing season. Annual phases in the recent time series reduced significantly as compared to the historic time series in the five major global biomes: by 14.1, 14.8, 10.6, 9.5, and 22.8 days in boreal forests/taiga; Mediterranean forests, woodlands, and scrubs; temperate conifer forests; temperate grasslands, savannas, and shrublands; and deserts, and xeric shrublands, respectively. In tropical and subtropical biomes, however, changes in the annual phase of vegetation coverage were not statistically significant. The decrease in the level of phases and acceleration of growth and changes in plant phenology indicate the increase in temperature and climate changes of the planet.

Biomes of the world under climate change scenarios: increasing aridity and higher temperatures lead to significant shifts in natural vegetation.

The global potential distribution of biomes (natural vegetation) was modelled using 8,959 training points from the BIOME 6000 dataset and a stack of 72 environmental covariates representing terrain and the current climatic conditions based on historical long term averages (1979-2013). An ensemble machine learning model based on stacked regularization was used, with multinomial logistic regression as the meta-learner and spatial blocking (100 km) to deal with spatial autocorrelation of the training points. Results of spatial cross-validation for the BIOME 6000 classes show an overall accuracy of 0.67 and R2logloss of 0.61, with "tropical evergreen broadleaf forest" being the class with highest gain in predictive performances (R2logloss = 0.74) and "prostrate dwarf shrub tundra" the class with the lowest (R2logloss = -0.09) compared to the baseline. Temperature-related covariates were the most important predictors, with the mean diurnal range (BIO2) being shared by all the base-learners (i.e.,random forest, gradient boosted trees and generalized linear models). The model was next used to predict the distribution of future biomes for the periods 2040-2060 and 2061-2080 under three climate change scenarios (RCP 2.6, 4.5 and 8.5). Comparisons of predictions for the three epochs (present, 2040-2060 and 2061-2080) show that increasing aridity and higher temperatures will likely result in significant shifts in natural vegetation in the tropical area (shifts from tropical forests to savannas up to 1.7 ×105 km2 by 2080) and around the Arctic Circle (shifts from tundra to boreal forests up to 2.4 ×105 km2 by 2080). Projected global maps at 1 km spatial resolution are provided as probability and hard classes maps for BIOME 6000 classes and as hard classes maps for the IUCN classes (six aggregated classes). Uncertainty maps (prediction error) are also provided and should be used for careful interpretation of the future projections.

Why woody plant modularity through time and space must be integrated in fire research?

Different ecosystems evolved and are maintained by fire, with their vegetation hosting species with a wide diversity of persistence strategies allowing them to insulate their body and resprout new branches after fire disturbance. Changes in fire regime are predicted due to climate change, either by promoting more frequent and/or severe fires or by reducing the number of fire events due to the limitation of fuel load. Predicting the future of fire-driven ecosystems is a complex task as species' survival depends on many factors that vary in space and time. Since plants are constantly experiencing new environments as they grow through meristem development, woody plant modularity, modules morpho-physiological aspects and their integration should be considered when investigating species strategies in fire-prone ecosystems: according to their position and their tissue composition, plants' modules experience fire differently and will contribute differently to other modules and the whole plant survival, with consequences cascading over the overall vegetation structure. Growth modules may hold the key to understanding how fast plants can get protected from fire, ultimately helping us to predict which species will persist across changing fire regimes. We present an empirical example showing how different fire-return intervals translate into distinct pressures on the timing, protection and location of modules, and discuss how these can translate into modifications in the vegetation structure due to climate change.

Potential Distribution of Pilocarpus microphyllus in the Amazonia/Cerrado Biomes under Near-Future Climate Change Scenarios.

Pilocarpus microphyllus Stapf. ex Wardlew. (Rutaceae) is an endemic and threatened medicinal plant species from tropical Brazil. Popularly known as "jaborandi", it is the unique natural source of pilocarpine, an alkaloid used to medical treat glaucoma and xerostomia. Based on Species Distribution Models (SDMs), we modeled the suitability of P. microphyllus's geographical distribution considering three Global Circulation Models (GCMs) under two future climate change scenarios (SSP2-4.5 and SSP5-8.5). The quantitative analyses carried out using ten different SDM algorithms revealed that precipitation seasonality (Bio15) and precipitation of the driest month (Bio14) were the most important bioclimatic variables. The results evidenced four main key areas of continuous occurrence of the plant spreading diagonally over tropical Brazilian biomes (Amazon, Cerrado and Caatinga). The near-future (2020 to 2040) ensemble projections considering all GCMs and scenarios have indicated negative impacts for the potential loss or significant reduction in suitable habitats for P. microphyllus in the transition region between the Amazon and Cerrado into central and northern Maranhão state, and mainly in the Caatinga biome over the northern Piaui state. On the other hand, positive impacts of the expansion of the plant habitat suitability are projected over forest cover protected areas of the Amazon biome in the southeastern Pará state. Since the jaborandi is of socioeconomic importance for many families in the north/northeast Brazil, it is urgent to implement public policies for conservation and sustainable management, thus mitigating the impacts of global climate change.

Temperature affects the timing and duration of fungal fruiting patterns across major terrestrial biomes.

The Earth's ecosystems are affected by a complex interplay of biotic and abiotic factors. While global temperatures increase, associated changes in the fruiting behaviour of fungi remain unknown. Here, we analyse 6.1 million fungal fruit body (mushroom) records and show that the major terrestrial biomes exhibit similarities and differences in fruiting events. We observed one main fruiting peak in most years across all biomes. However, in boreal and temperate biomes, there was a substantial number of years with a second peak, indicating spring and autumn fruiting. Distinct fruiting peaks are spatially synchronized in boreal and temperate biomes, but less defined and longer in the humid tropics. The timing and duration of fungal fruiting were significantly related to temperature mean and variability. Temperature-dependent aboveground fungal fruiting behaviour, which is arguably also representative of belowground processes, suggests that the observed biome-specific differences in fungal phenology will change in space and time when global temperatures continue to increase.

Metagenomic data reveals type I polyketide synthase distributions across biomes.

Microbial polyketide synthase (PKS) genes encode the biosynthesis of many biomedically or otherwise commercially important natural products. Despite extensive discovery efforts, metagenomic analyses suggest that only a small fraction of nature's polyketide biosynthetic potential has been realized. Much of this potential originates from type I PKSs (T1PKSs), which can be further delineated based on their domain organization and the structural features of the compounds they encode. Notably, phylogenetic relationships among ketosynthase (KS) domains provide an effective method to classify the larger and more complex T1PKS genes in which they occur. Increased access to large metagenomic data sets from diverse habitats provides opportunities to assess T1PKS biosynthetic diversity and distributions through their smaller and more tractable KS domain sequences. Here, we used the web tool NaPDoS2 to detect and classify over 35,000 type I KS domains from 137 metagenomic data sets reported from eight diverse, globally distributed biomes. We found biome-specific separation with soils enriched in KSs from modular cis-acetyltransferase (AT) and hybrid cis-AT KSs relative to other biomes and marine sediments enriched in KSs associated with polyunsaturated fatty acid and enediyne biosynthesis. We linked the phylum Actinobacteria to soil-derived enediyne and cis-AT KSs while marine-derived KSs associated with enediyne and monomodular PKSs were linked to phyla from which the compounds produced by these biosynthetic enzymes have not been reported. These KSs were phylogenetically distinct from those associated with experimentally characterized PKSs suggesting they may be associated with novel structures or enzyme functions. Finally, we employed our metagenome-extracted KS domains to evaluate the PCR primers commonly used to amplify type I KSs and identified modifications that could increase the KS sequence diversity recovered from amplicon libraries. IMPORTANCE Polyketides are a crucial source of medicines, agrichemicals, and other commercial products. Advances in our understanding of polyketide biosynthesis, coupled with the increased availability of metagenomic sequence data, provide new opportunities to assess polyketide biosynthetic potential across biomes. Here, we used the web tool NaPDoS2 to assess type I polyketide synthase (PKS) diversity and distributions by detecting and classifying ketosynthase (KS) domains across 137 metagenomes. We show that biomes are differentially enriched in type I KS domains, providing a roadmap for future biodiscovery strategies. Furthermore, KS phylogenies reveal biome-specific clades that do not include biochemically characterized PKSs, highlighting the biosynthetic potential of poorly explored environments. The large metagenome-derived KS data set allowed us to identify regions of commonly used type I KS PCR primers that could be modified to capture a larger extent of environmental KS diversity. These results facilitate both the search for novel polyketides and our understanding of the biogeographical distribution of PKSs across Earth's major biomes.

The amazing native Brazilian fruits.

A number of native Brazilian plant species are under exploited by the scientific community, despite the country's precious biodiversity. The vast majority of native Brazilian fruits (NBF) is source of compounds that provide many health benefits and can potentially be used to prevent diseases and formulate high-added value products. This review covers the scientific research over the last decade (2012-2022) on eight NBF, and focuses on information about the production and market panorama, physical description, physicochemical characterization, nutritional composition, their functional value of bioactive compounds and health benefits, as well as the potential for utilizations for each. The studies herein compiled reveal the outstanding nutritional value of these NBF. They are sources of vitamins, fibers, minerals and bioactive compounds that exhibit antioxidant activity, and they contain phytochemicals with anti-inflammatory action, anti-obesity and other functions that bring many health benefits to consumers. NBF can be also used as raw material for multiple products such as nectars, juices, jams, frozen pulps, liquor, among others. The dissemination of knowledge about NBF has fundamental implications worldwide.

High Trypanosoma cruzi prevalence in armadillo (Zaedyus pichiy; Xenarthra: Chlamyphoridae) populations from Mendoza, Argentina.

Armadillos are considered important reservoir hosts for Trypanosoma cruzi, the causative agent of Chagas disease. The first report of T. cruzi infection in pichis (Zaedyus pichiy), a small armadillo species endemic to central Argentina and Chile, dates back to 1935. However, more recent reports on T. cruzi in this species are scarce. The objective of this study was to assess T. cruzi infection and parasite load in Z. pichiy from Mendoza Province, an area endemic to human Chagas disease. Blood samples were obtained in 2014-2016 from pichis from Lavalle (low Monte), Malargüe (Patagonian steppe), and San Carlos (ecotone) departments, Mendoza Province, Argentina. The detection and quantification of T. cruzi was performed through qPCR amplification using satellite primers. Of the 265 analyzed samples, 201 (76%) were positive for T. cruzi. Parasite loads varied between < 0.1-55.8 parasite-equivalents/mL (par-eq/mL), with a median of 1.1 par-eq/mL in quantifiable samples. The prevalence was similar in Malargüe and Lavalle (85-94%), but significantly lower in pichis from San Carlos (50%). Animals from Lavalle captured after hibernation had significantly higher parasite loads (median 2.0 par-eq/mL). In Malargüe, T. cruzi infection and parasite loads were significantly lower before than after hibernation in 2016. The high prevalence and low median parasite load suggest a chronic and persistent infection of T. cruzi in pichis. Regional differences and a marked increase in precipitation during 2015-2016 could have influenced annual and seasonal infection rates of this vector-borne disease.