Precipitation explains Wood Thrush (Hylocichla mustelina) occupancy patterns in Northern Costa Rica / Patrones de ocurrencia del Zorzal del Bosque (Hylocichla mustelina) explicados por la precipitación en el Norte de Costa Rica

Abstract Introduction: The Wood Thrush is a migratory bird that has experienced dramatic declines in its populations in recent decades. This species overwinters in forest fragments with intermediate levels of habitat modification in Central America. However, more studies detailing the use of remnant forests through time are needed to elucidate the threats this species faces in the wintering grounds. Objective: To understand the effects of environmental and forest structure variables on the occupancy of Wood Thrush in Northern Costa Rica. Methods: The study area was the Área de Conservación Guanacaste (ACG), located in Northern Costa Rica, in December 2016, and during the 2018-2019 migration season. We estimated Wood Thrush occupancy and detection probability in four locations of ACG (dry forest, cloud forest, and two locations in the wet forest) using single-season occupancy models. We also estimated Wood Thrush occupancy and probability of persistence in different months in three vegetation types (open area, secondary forest, and old-growth forest) in the wet forest of ACG using a multi-season occupancy model approach. Results: Wood Thrush occupancy was best described by precipitation in the four locations of the ACG; the probability of occupancy increased with precipitation. The average occupancy of Wood Thrushes varied with vegetation type: open area with shrubs and forest edge (0.69 ± 0.09), secondary forest (0.46 ± 0.1), and old-growth forest (0.61 ± 0.1). Wood Thrush probability of persistence responded partially to changes in precipitation, with an unexpected increase in persistence when the rainfall continued decreasing in the season. Conclusion: Wood Thrush occupancy was best predicted by changes in precipitation considering a larger spatial scale. Its probability of persistence partially varied with precipitation. An increase in persistence closer to Spring migration might be explained by the start of the breeding season of resident birds, potentially reducing territorial conflicts and conserving energy before migration. The long-term protection of wet forests in Northern Costa Rica is of paramount importance for the conservation of Wood Thrushes in their wintering grounds.

Resumen Introducción: El Zorzal del Bosque es un ave migratoria que ha experimentado caídas dramáticas en sus poblaciones en las últimas décadas. Esta especie pasa el invierno en fragmentos de bosque con niveles intermedios de modificación de hábitat en Centroamérica. Sin embargo, se necesitan más estudios que detallen el uso de los bosques remanentes a lo largo del tiempo para dilucidar las amenazas que enfrenta esta especie en las zonas de invernada. Objetivo: Comprender los efectos de variables ambientales y de estructura del bosque en la ocurrencia del Zorzal del Bosque en el Norte de Costa Rica. Métodos: El área de estudio fue el Área de Conservación Guanacaste (ACG), ubicada en el Norte de Costa Rica, en diciembre de 2016, y en la temporada migratoria 2018-2019. Estimamos la ocurrencia y la probabilidad de detección del Zorzal del Bosque en cuatro ubicaciones de ACG (bosque seco, bosque nuboso y dos ubicaciones en el bosque húmedo) utilizando modelos de ocurrencia de una sola temporada. También estimamos la ocurrencia del Zorzal del Bosque y la probabilidad de persistencia en diferentes meses en tres tipos de vegetación (área abierta, bosque secundario y bosque primario) en el bosque húmedo de ACG utilizando un enfoque de modelo de ocurrencia multi-estacional. Resultados: La ocurrencia del Zorzal del Bosque estuvo mejor descrita por la precipitación en las cuatro localidades del ACG; la probabilidad de ocurrencia aumentó con las precipitaciones. La ocurrencia media de zorzales varió con el tipo de vegetación: área abierta con arbustos y borde de bosque (0.69 ± 0.09), bosque secundario (0.46 ± 0.1) y bosque primario (0.61 ± 0.1). La probabilidad de persistencia del zorzal respondió parcialmente a cambios en la precipitación, con un aumento inesperado en la persistencia cuando las precipitaciones continuaron disminuyendo en la temporada. Conclusión: La ocurrecia del Zorzal del Bosque varió con la precipitación considerando una escala espacial mayor. Su probabilidad de persistencia varió parcialmente con la precipitación. Un aumento en la persistencia más cerca de la migración de primavera podría explicarse por el inicio de la temporada de reproducción de las aves residentes, lo que podría reducir los conflictos territoriales y conservar energía antes de la migración. La protección a largo plazo de los bosques húmedos en el norte de Costa Rica es de suma importancia para la conservación de los Zorzales del Bosque en sus zonas de invernada.

The gut microbiota of wild birds undergoing rehabilitation as a reservoir of multidrug-resistant enterococci in a metropolitan area in Brazil.

Enterococci are ubiquitous usually commensal bacteria that can act as opportunistic pathogens frequently associated with resistance to multiple antimicrobial classes. A variety of animals may carry potentially harmful enterococci. In the present work, the occurrence and characteristics of enterococci recovered from the fecal microbiota of wild birds belonging to four families (Accipitridae, Cathartidae, Falconidae and Strigidae) were investigated. Enterococci were recovered from 104 (92.0%) fecal samples obtained from 113 birds, and 260 strains were selected for additional characterization. Enterococcus faecalis was the predominant species (63.8%), followed by Enterococcus hirae (16.2%), Enterococcus faecium (11.5%), Enterococcus gallinarum (5.4%), Enterococcus avium (1.5%), Enterococcus casseliflavus (0.8%), and Enterococcus raffinosus and Enterococcus cecorum (0.4% each). Major percentages (11.9% 75.0%) of nonsusceptibility were observed to quinolones (particularly to enrofloxacin), erythromycin, rifampin, nitrofurantoin, tetracycline and streptomycin. Gentamicin and ampicillin resistances (13.3% each) were only detected among E. faecium. A total of 133 (51.2%) strains were MDR, showing a large variety of MDR profiles, composed by simultaneous resistance encompassing 3 to 12 antimicrobials. MDR strains were found in 68.2% of the birds. Antimicrobial resistance was associated with the presence of the aac(6')-aph(2″)-Ia, aph(2″)-Id, ant(6)-Ia, ant(9)-Ia, ant(9)-Ib, tet(M), tet(L), tet(S), erm(B), mef(A/E), msrC, and vat(D) genes. The most common virulence genes were efaA, gelE, ace, eeP, and asa1. PFGE analysis revealed a large genetic diversity among most of the strains. MLST performed for 35 E. faecalis strains revealed 23 different STs, whereas 14 STs were found among 18 E. faecium strains. Hospital-associated lineages ST22, ST25, ST56, ST1274 were identified. The results show that the wild birds investigated can carry a diversity of potentially hazardous enterococcal strains displaying multiple antimicrobial resistance and virulence genes, reinforcing the assumption that these animals provide an important target to monitor the circulation of microorganisms that deserve consideration under the One Health perspective.

Wild birds as potential bioindicators of environmental antimicrobial resistance: A preliminary investigation.

Antimicrobial resistance (AMR) is an issue of global concern that includes human, animal, and environmental health. To tackle this phenomenon, a One Health approach is required through the involvement of all these interconnected elements. The environment poses challenges for investigation, but wildlife animals, not directly exposed to antibiotic treatments and interacting with their habitats, can serve as indicators of AMR contamination. Specifically, wild birds could play a significant role in dissemination of AMR, as they can acquire AMR bacteria from wildlife reservoirs and disperse them through environments. This study aims to assess the prevalence of AMR in commensal bacteria isolated from wild birds and their role as bioindicators of environmental AMR. A total of 73 birds belonging to various species were sampled in the Emilia-Romagna region with buccal, cloacal and feather samplings. The samples were cultured on selective media, colonies were identified using MALDI-TOF technology and antimicrobial susceptibility to different drugs was assessed using the Kirby-Bauer method. The birds' data were statistically evaluated in relation to AMR percentages. In total, 117 bacterial strains were isolated, belonging to 23 genera and 46 different bacterial species. The highest non-susceptibility percentages were observed for tetracycline (12.2 %) and enrofloxacin (8.6 %) considering all bacterial isolates, as well as for oxacillin (46.8 %), clindamycin (29.3 %) and rifampicin (20.8 %), among Gram-positive isolates. In the statistical analysis, a higher AMR percentage was correlated with Gram-positive isolates from birds belonging to rural/urban habitat (p = 0.01). Among Gram-positives, a higher oxacillin non-susceptibility percentage was found to be associated with isolates from birds sampled in province of Bologna (p = 0.007), a higher enrofloxacin non-susceptibility percentage revealed an association with rural/urban habitat (p = 0.02), while a higher non-susceptibility percentage towards rifampicin resulted associated with isolates from migratory birds (p = 0.031). In conclusion, this preliminary study suggests a potential role of wild birds as bioindicators for monitoring AMR contamination in the environment.

Palaeognaths reveal evolutionary ancestry of the avian Major Histocompatibility Complex class II.

The multigene family of the Major Histocompatibility Complex (MHC) codes for the key antigen-presenting molecules of the vertebrate immune system. In birds, duplicated MHC class II (MHC-II) genes are highly homogenized by concerted evolution and, thus, identification of their orthologous relationships across long evolutionary timescales remains challenging. Relatively low evolutionary rate of avian MHC class IIA genes has been expected to provide a promising avenue to allow such inferences, but availability of MHC-IIA sequences in non-model bird species has been limited until recently. Here, taking advantage from accumulating genomic resources, we identified and analysed MHC-IIA sequences from the most basal lineage of extant birds (Palaeognathae). Conserved region of the MHC-IIA membrane-proximal domain was used to search for orthologous relationships between palaeognath birds and non-avian reptiles. First, analyses of palaeognath sequences revealed the presence of a separate MHC-IIA gene lineage (DAA3) in kiwis, which did not cluster with previously described avian MHC-IIA lineages (DAA1 and DAA2). Next, phylogenetic reconstruction showed that kiwi DAA3 sequences form a single well supported cluster with turtle MHC-IIA. High similarity of these sequences most likely reflects their remarkable evolutionary conservation and retention of ancient orthologous relationships, which can be traced back to basal archosauromorphs ca. 250 million years ago. Our analyses offer novel insights into macroevolutionary history of the MHC and reinforce the view that rapid accumulation of high-quality genome assemblies across divergent non-model species can substantially advance our understanding of gene evolution.

Slower but deeper community change: Intrinsic dynamics regulate anthropogenic impacts on species temporal turnover.

Understanding the mechanisms behind biodiversity dynamics is central to assessing and forecasting anthropogenic impacts on ecological communities. However, the manner in which external environmental drivers act in concert with intrinsic ecological processes to influence local temporal turnover is currently largely unexplored. Here, we determine how human impacts affect multiple metrics of bird community turnover to establish the ecological mechanisms behind compositional change. We used US Breeding Bird Survey data to calculate transect-level rates of three measures of temporal species turnover: (1) "short-term" (initial rate of decline of Sørensen similarity), (2) "long-term" (asymptotic Sørensen similarity), and (3) "throughput" (overall species accumulation rate from species-time relationship exponents) over 2692 transects across 27 regional habitat types. We then hierarchically fit linear models to estimate the effect of anthropogenic impact on these turnover metrics, using the Human Modification Index proxy, while accounting for observed species richness, the size of the species pool, and annual environmental variability. We found broadly consistent impacts of increased anthropogenic pressures across diverse habitat types. The Human Modification Index was associated with greater turnover at long timescales, but marginally slower short-term turnover. The species "throughput" (accumulation rate) was not notably influenced. Examining anthropogenic impacts on different aspects of species turnover in combination allows greater ecological insight. Observed human impacts on short-term turnover were the opposite of existing expectations and suggest humans are disrupting the background turnover of these systems, rather than simply driving rapid directed turnover. The increased long-term turnover without concurrent increases in species accumulation implies human impacts lead to shifts in species occurrence frequency rather than simply greater arrival of "new" species. These results highlight the role of intrinsic dynamics and caution against simple interpretations of increased species turnover as reflections of environmental change.

Seasonal and between-population variation in heat tolerance and cooling efficiency in a Mediterranean songbird.

Discrete populations of widely distributed species may inhabit areas with marked differences in climatic conditions across geographic and seasonal scales, which could result in intraspecific variation in thermal physiology reflecting genetic adaptation, phenotypic plasticity, or both. However, few studies have evaluated inter-population variation in physiological responses to heat. We evaluated within- and inter-population seasonal variation in heat tolerance, cooling efficiency and other key thermoregulatory traits in two Mediterranean populations of Great tit Parus major experiencing contrasting thermal environments: a lowland population subject to hotter summers and a higher annual thermal amplitude than a montane population. Specifically, we measured heat tolerance limits (HTL), body temperature, resting metabolic rate, evaporative water loss, and evaporative cooling efficiency (the ratio between evaporative heat loss to metabolic heat production) within and above the thermoneutral zone during winter and summer. Heat tolerance during summer was greater in lowland than in montane birds; indeed, lowland birds seasonally increased this trait to a significant level, while montane ones did to a lesser extent. Besides, lowland birds showed greater evaporative cooling efficiency during summer (possibly due in part to reductions in total endogenous heat load), while surprisingly montane ones showed the opposite trend. Thus, lowland birds displayed greater seasonal flexibility in HTL, body temperature and resting metabolic rate above thermoneutrality, thus giving some support to the climatic variability hypothesis - that flexibility in thermoregulatory traits should increase with climatic variability. Our results partially support the idea that songbirds' adaptive thermoregulation in the heat is flexible, highlighting the importance of considering intraspecific variation in thermoregulatory traits when modelling the future distribution and persistence of species under different climate change scenarios.

Behavioural responses to mammalian grazing expose insect herbivores to elevated risk of avian predation.

Large mammalian herbivores (LMH) are important functional components and drivers of biodiversity and ecosystem functioning in grasslands. Yet their role in regulating food-web dynamics and trophic cascades remains poorly understood. In the temperate grasslands of northern China, we explored whether and how grazing domestic cattle (Bos taurus) alter the predator-prey interactions between a dominant grasshopper (Euchorthippus unicolor) and its avian predator the barn swallow (Hirundo rustica). Using two large manipulative field experiments, we found that in the presence of cattle, grasshoppers increased their jumping frequency threefold, swallows increased foraging visits to these fields sixfold, and grasshopper density was reduced by about 50%. By manipulatively controlling the grasshoppers' ability to jump, we showed that jumping enables grasshoppers to avoid being incidentally consumed or trampled by cattle. However, jumping behaviour increased their consumption rates by swallows 37-fold compared with grasshoppers that were unable to jump. Our findings illustrate how LMH can indirectly alter predator-prey interactions by affecting behaviour of avian predators and herbivorous insects. These non-plant-mediated effects of LMH may influence trophic interactions in other grazing ecosystems and shape community structure and dynamics. We highlight that convoluted multispecies interactions may better explain how LMH control food-web dynamics in grasslands.

Variation in the thermal plasticity of avian embryos is produced by the developmental environment, not genes.

Limited evidence suggests that variation in phenotypic plasticity within populations may arise largely from environmental sources, thereby constraining its evolvability. This is of concern for temperature-sensitive metabolism in the face of climate change. We quantified the relative influence of the developmental environment versus genes on the metabolic plasticity of avian embryos to temperature. We partially cross-fostered 602 house sparrow eggs (Passer domesticus), measured the heart rate plasticity of these embryos to egg temperature and partitioned variance in plasticity. We found that the foster (incubation) environment was the sole meaningful source of variance in embryonic plasticity (not genes, pre-laying effects or ambient conditions). In contrast to heart rate plasticity, offspring growth was influenced by the foster environment, genes/pre-laying parental effects and ambient conditions. Although embryonic plasticity to temperature varied in this population, these results suggest that it is unlikely to evolve quickly. Nevertheless, the expression of this plasticity may be able to shift between generations in response to changes in the developmental environment. Whether the multidimensional plasticity of heart rate to both current temperature and the developmental environment is itself an adaptive, evolved trait allowing avian embryos to optimize their metabolic plasticity to their current environment remains to be tested.

Existing evidence on the effect of urban forest management in carbon solutions and avian conservation: a systematic literature map.

BACKGROUND: Urgent solutions are needed in cities to mitigate twin crises of global climate change and biodiversity loss. Urban nature-based solutions (actions that protect, sustainably manage, and restore ecosystems while simultaneously providing human wellbeing and biodiversity benefits) are being advocated for as multi-functional tools capable of tackling these societal challenges. Urban forest management is a proposed nature-based solution with potential to address both climate change mitigation and biodiversity loss along with multiple other benefits. However, bodies of evidence measuring multiple outcomes (e.g., biodiversity conservation and nature-based climate solutions) remain siloed which limits conservation and management opportunities. In this article, we present a systematic map of the literature on urban forest management strategies that measure both biodiversity goals (through avian conservation) and climate change mitigation goals (through carbon storage and sequestration). METHODS: Following a published protocol, we searched for evidence related to urban forest management strategies for (1) avian conservation and (2) carbon solutions within the global temperate region in academic and grey literature. In addition to Scopus, ProQuest and Web of Science Core Collection, we searched 21 specialist websites. We screened English language documents using predefined inclusion criteria on titles and abstracts, and then full texts. All qualifying literature items were coded, and metadata were extracted. No study validity appraisal was conducted. We identified knowledge clusters and gaps related to forest management strategies for both topics. REVIEW FINDINGS: Our searches identified 19,073 articles published, of which 5445 were duplicates. The title and abstract screening removed a further 11,019 articles. After full-text screening (1762 and 1406), a total of 277 avian and 169 forest carbon literature items met the eligibility criteria and were included in the final database. We found a large knowledge base for broad-scale avian metrics: abundance, species richness. We similarly found that both avian and carbon solutions most often used broad-scale forest management components: land use type, composition, and forested area and least often considered fragmentation, connectivity, and diversity metrics (abundance, richness). The most understudied avian metrics were foraging, resources, and survival while the most understudied carbon solutions metrics were soil carbon, dead wood and organic matter and infrastructure. Avian literature most often used an experimental design (56% with comparator, 44% no comparator) while forest carbon solutions literature was dominated by observational studies (86%). In both topics, studies most often occurred over short timelines between 0 and 1 and 2-5 years. The body of evidence for both avian and carbon outcomes present a scale-mismatch between the scale of forest management strategy (e.g., land use type) and scale of application (e.g., patch). For example, the majority of studies considered forest strategies at broad scales, like land use type or composition, yet were conducted at a patch or multi-patch scale. Our systematic map also highlights that multi-city and regional urban scales are underrepresented in both carbon solutions and avian conservation and will require additional research efforts. Finally, we highlight gaps in the inclusion of recommendations in both bodies of literature. Roughly 30% of articles in each topic's database did not include recommendations for practitioners or researchers. CONCLUSIONS: Our systematic map provides a database and identifies knowledge gaps and clusters of urban forest management strategies for (1) avian conservation and (2) carbon solutions. Overall, our map will allow researchers to fill existing gaps in literature through new research investigations, meta-analyses or systematic reviews while also pointing policymakers toward strong knowledge bases in addition to understudied or mismatched areas that require more funding.

Detection of airborne wild waterbird-derived DNA demonstrates potential for transmission of avian influenza virus via air inlets into poultry houses, the Netherlands, 2021 to 2022.

BackgroundOutbreaks of highly pathogenic avian influenza (HPAI) on poultry farms and in wild birds worldwide persists despite intensified control measures. It causes unprecedented mortality in bird populations and is increasingly affecting mammalian species. Better understanding of HPAI introduction pathways into farms are needed for targeted disease prevention and control. The relevance of airborne transmission has been suggested but research involving air sampling is limited and unequivocal evidence on transmission routes is lacking.AimWe aimed to investigate whether HPAI virus from wild birds can enter poultry houses through air inlets by characterising host materials through eukaryote DNA sequencing.MethodsWe collected particulate matter samples in and around three HPAI-affected poultry farms which were cleared and decontaminated before sampling. Indoor measurements (n = 61) were taken directly in the airflow entering through air inlets, while outdoor air samples (n = 60) were collected around the poultry house. Positive controls were obtained from a bird rehabilitation shelter. We performed metabarcoding on environmental DNA by deep sequencing 18S rRNA gene amplicons.ResultsWe detected waterbird DNA in air inside all three, and outside of two, poultry farms. Sequences annotated at species level included swans and tufted ducks. Waterbird DNA was present in all indoor and outdoor air samples from the bird shelter.ConclusionAirborne matter derived from contaminated wild birds can potentially introduce HPAI virus to poultry houses through air inlets. The eDNA metabarcoding could assess breaches in biosecurity for HPAI virus and other pathogens potentially transmitted through air via detection of their hosts.

Non-breeding conditions induce carry-over effects on survival of migratory birds.

Identifying the processes that limit populations is a foundational objective of ecology and an urgent need for conservation. For migratory animals, researchers must study individuals throughout their annual cycles to determine how environmental conditions limit demographic rates within each period of the annual cycle and also between periods through carry-over effects and seasonal interactions.1,2,3,4,5,6 Our poor understanding of the rates and causes of avian migration mortality7 hinders the identification of limiting factors and the reversal of widespread avian population declines.8,9 Here, we implement new methods to estimate apparent survival (hereafter survival) during migration directly from automated telemetry data10 in Kirtland's Warblers (Setophaga kirtlandii) and indirectly from mark-recapture data in Black-throated Blue Warblers (S. caerulescens). Previous experimental and observational studies of our focal species and other migratory songbirds have shown strong effects of Caribbean precipitation and habitat quality on food availability,11,12,13,14 body condition,12,13,14,15,16,17,18,19 migration timing,11,12,15,16,20,21,22,23 natal dispersal,24,25 range dynamics,26 reproductive success,20,22,27 and annual survival.18,19,20,23,28,29,30,31 Building on this research, we test the hypotheses that environmental conditions during the non-breeding period affect subsequent survival during spring migration and breeding. We found that reduced precipitation and environmental productivity in the non-breeding period strongly influenced survival in both species, primarily by reducing survival during spring migration. Our results indicate that climate-driven environmental conditions can carry over to affect survival in subsequent periods and thus likely play an important role in year-round population dynamics. These lethal carry-over effects may be widespread and are likely magnified by intensifying climate change.

Antibiotic-resistant Escherichia coli from treated municipal wastewaters and Black-headed Gull nestlings on the recipient river.

Wastewaters belong among the most important sources of environmental pollution, including antibiotic-resistant bacteria. The aim of the study was to evaluate treated wastewaters as a possible transmission pathway for bacterial colonisation of gulls occupying the receiving river. A collection of antibiotic-resistant Escherichia coli originating both from treated municipal wastewaters discharged to the river Svratka (Czech Republic) and nestlings of Black-headed Gull (Chroicocephalus ridibundus) living 35 km downstream of the outlet was obtained using selective cultivation. Isolates were further characterised by various phenotyping and genotyping methods. From a total of 670 E. coli isolates (450 from effluents, 220 from gulls), 86 isolates (41 from effluents, 45 from gulls) showed identical antibiotic resistance phenotype and genotype and were further analysed for clonal relatedness using pulsed-field gel electrophoresis (PFGE). Despite the overall high diversity of the isolates, 21 isolates from both sources showed similar PFGE profiles. Isolates belonging to epidemiologically important sequence types (ST131, 15 isolates; ST23, three isolates) were subjected to whole-genome sequencing. Subsequent phylogenetic analysis did not reveal any close clonal relationship between the isolates from the effluents and gulls' nestlings with the closest strains showing 90 SNPs difference. Although our study did not provide direct evidence of transmission of antibiotic-resistant E. coli to wild gulls via treated wastewaters, we observed gull chicks as carriers of diverse multi-resistant E. coli, including high-risk clones, posing risk of further bacterial contamination of the surrounding environment.

Lower adaptive immunity in invasive Egyptian geese compared to sympatric native waterfowls.

Successful invasive species increase their spreading success by trading-off nutritional and metabolic resources allocated to reproduction and range expansion with other costly body functions. One proposed mechanism for the reallocation of resources is a trade-off with the immune function and the regulation of oxidative status. Relying on a panel of blood-based markers of immune function and oxidative status quantified in an invasive species (Egyptian goose) and two native competing species (mallard and mute swan) in Germany, we tested the hypothesis that the invasive species would have (i) lower investment in immune function, (ii) lower levels of oxidative damage, and (iii) no higher antioxidant defences compared to the native species. We found lower levels of adaptive immune markers (lymphocytes and immunoglobulin Y), in the invasive species compared to the two native species. Innate immune profile was generally similar between Egyptian geese and mallards. By contrast, mute swans showed higher levels of heterophils and lysozymes, and lower levels of bacteria killing ability compared to both Egyptian geese and mallards. Mute swans also showed higher levels of haemolysis and haemagglutination, but lower levels of monocytes and haematocrit compared to Egyptian geese. Reactive oxygen metabolites, a marker of oxidative damage, were higher in mallards and lower in Egyptian geese compared to the other waterfowl species, while levels of antioxidants were generally similar among the three species. Our results point to a reduced investment in adaptive immune function in the invasive species as a possible resources-saving immunological strategy due to the loss of co-evolved parasites in the new colonised habitats, as observed in a previous study. A lower investment in immune function may benefit other energy-demanding activities, such as reproduction, dispersal, and territoriality, while maintaining relatively higher innate immunity is beneficial since invasive species mainly encounter novel pathogens. Results pointed out also other important species-specific differences in baseline immune status, supporting previous findings on the relationship between species' body mass and immune profile.

Histopathologic Features and Viral Antigen Distribution of H5N1 Highly Pathogenic Avian Influenza Virus Clade 2.3.4.4b from the 2022-2023 Outbreak in Iowa Wild Birds.

In 2022, a new epornitic of H5N1 highly pathogenic avian influenza (HPAI) virus clade 2.3.4.4b emerged in U.S. domestic poultry with high prevalence in wild bird populations. We describe pathological findings of HPAI H5N1 in nine wild birds encompassing eight different species, including Accipitriformes (red-tailed hawk, bald eagle), Cathartiforme (turkey vulture), Falconiforme (peregrine falcon), Strigiforme (one adult great-horned owl, one juvenile great-horned owl), Pelecaniforme (American white pelican), and Anseriformes (American green-winged teal, trumpeter swan). All these birds died naturally (found dead, or died in transit to or within a rehabilitation center), except for the bald eagle and American green-winged teal, which were euthanized. Gross lesions were subtle, characterized by meningeal congestion observed in the turkey vulture, bald eagle, and adult great-horned owl. Histologically, encephalitis was observed in all cases (9/9, 100%). Leukocytoclastic and fibrinoid vasculitis with necrotizing encephalitis was observed in the red-tailed hawk, great-horned owls, and American white pelican (5/9, 55.6%), and perivascular lymphohistiocytic encephalitis was seen in the turkey vulture, peregrine falcon, green-winged teal, and bald eagle (4/9, 44.4%). Coagulative necrosis or lymphohistiocytic/lymphoplasmacytic inflammation was identified in the kidney (6/8, 75%), liver (6/9, 66.7%), heart (5/9, 55.6%), and lung (2/9, 22.2%). Immunopositive signals against Influenza virus A nucleoprotein were predominantly detected within the brain (9/9, 100%), air sac (7/9, 77.8%), lung (7/9, 77.8%), kidney (6/8, 75%), heart (6/9, 66.7%), and liver (5/9, 55.6%). Additionally, other organs, such as the pancreas, spleen, intestines, gonads, and adrenals occasionally exhibited positive viral protein signals. In these organs, in addition to parenchymal cells, viral protein signals were often identified in endothelial cells. Our results suggest that the 2022-2023 HPAIV H5N1 clade 2.3.4.4b replicated systemically in all examined birds, with brain lesions being the most prevalent and associated with a subset of birds displaying clinical signs observed perimortem.

Características histopatológicas y distribución del antígeno viral del virus de la influenza aviar altamente patógeno H5N1, clado 2.3.4.4b del brote de 2022-2023 en aves silvestres de Iowa. En 2022, surgió una nueva epizootia por el clado 2.3.4.4b del virus de la influenza aviar altamente patógeno (HPAI) H5N1 en la avicultura de los Estados Unidos con alta prevalencia en poblaciones de aves silvestres. En este artículo se describen los hallazgos patológicos producidos por el virus de la influenza aviar altamente patógeno H5N1 en nueve aves silvestres que abarcan ocho especies diferentes, incluyendo Accipitriformes (gavilán colirrojo, águila calva), Cathartiforme (buitre americano), Falconiforme (halcón peregrino), Strigiforme (un búho americano adulto y un búho americano juvenil), pelecaniforme (pelícano blanco americano) y anseriformes (cerceta americana, cisne trompetero). Todas estas aves murieron de forma natural (encontradas muertas o murieron en tránsito hacia o dentro de un centro de rehabilitación), excepto el águila calva y la cerceta americana, que fueron sacrificadas. Las lesiones macroscópicas fueron sutiles y se caracterizaron por congestión meníngea observada en el buitre, el águila calva y el búho adulto. Histológicamente se observó encefalitis en todos los casos (9/9, 100%). Se observó vasculitis leucocitoclástica y fibrinoide con encefalitis necrotizante en el gavilan colirrojo, el búho americano, el pelícano blanco americano (5/9, 55,6%), y encefalitis linfohistiocítica perivascular en el buitre, el halcón peregrino, la cerceta americana y el águila calva (4/9, 44,4%). Se identificó necrosis coagulativa o inflamación linfohistiocítica/linfoplasmocítica en el riñón (6/8, 75%), hígado (6/9, 66,7%), corazón (5/9, 55,6%) y pulmón (2/9, 22,2%). La detección positiva contra la nucleoproteína del virus de la influenza A se detectó predominantemente en el cerebro (9/9, 100%), sacos aéreos (7/9, 77,8%), pulmón (7/9, 77,8%), riñón (6/8, 75 %), corazón (6/9, 66,7%) e hígado (5/9, 55,6%). Además, otros órganos, como el páncreas, el bazo, los intestinos, las gónadas y las glándulas suprarrenales ocasionalmente exhibieron señales positivas de proteínas virales. En estos órganos, además de las células parenquimatosas, a menudo se identificaron señales de proteínas virales en las células endoteliales. Nuestros resultados sugieren que el virus de influenza altamente patógeno clado 2.3.4.4b H5N1 2022-2023 se replicó sistémicamente en todas las aves examinadas, siendo las lesiones cerebrales las más prevalentes y asociadas con un subconjunto de aves que muestran signos clínicos observados alrededor de la muerte.

Phenotypic and molecular characterization of vancomycin resistant Enterococci from wild birds: First detection of a plasmid-borne vanC1 in Enterococcus faecalis.

Vancomycin-resistant enterococci (VRE) are a public health concern as they lead to therapeutic impasses and play a pivotal role in the dissemination of vancomycin resistance genes. As recent evidence suggests that wildlife can play a role in the dissemination of bacterial resistomes, this study explored the potential role of Algerian wild birds as a reservoir of VRE. A total of 222 cloacal and fecal samples were collected from various wild bird species and screened for VRE using a selective medium. Of the 47 isolated strains, 22 were identified as Enterococcus casseliflavus with the vanC2/C3 gene, 24 as Enterococcus gallinarum (19 carrying vanC1 and five carrying vanC2/C3), and one strain as Enterococcus faecalis with the vanC1 gene. Twenty-four (24) strains were multidrug-resistant with 61.7% resistant to rifampicin while no resistance to teicoplanin, linezolid and gentamicin was found. Additionally, 53.20% of the strains exhibited at least one virulence factor. To our knowledge, this study represents the first documentation of the vanC1 gene in E. faecalis isolated from wild birds. Furthermore, this gene was found to be carried by a conjugative plasmid, highlighting its ability to spread among bacterial populations and lead to the emergence of novel resistance phenotypes.

Corvisyringophilus, a New Genus in the Family Syringophilidae (Acariformes: Prostigmata) and Its Phylogenetic Position among Primitive Genera.

Syringophilidae is one of the most species-rich families in the superfamily Cheyletoidea, comprising approximately 420 species across 62 genera and two subfamilies. In this paper, we propose a new genus, Corvisyringophilus, and a new species, C. krummi gen. n. et sp. n., found in the wing covert quills of the Common Raven, Corvus corax Linnaeus, in Iceland. Corvisyringophilus is placed among the primitive genera of syringophilid mites, which possess the full complement of idiosomal and leg setae. Phylogenetic analysis based on morphological characters suggests that this genus forms a sister clade to Blaszakia Skoracki & Sikora, 2008, and Charadriphilus Bochkov & Mironov, 1998, which inhabit birds of the orders Musophagiformes and Charadriiformes, respectively. The study proposes that the current distribution patterns of quill mites, based on their morphological characteristics, may result from multiple host switching followed by co-speciation events, highlighting the complex evolutionary dynamics within this family.

Climate factors and food availability shape the altitudinal migration of birds in the Xiling Snow Mountains, China.

Many bird species in montane regions display altitudinal migration, but so far, the underlying ecological driving mechanisms are not clear. We studied the altitudinal migration behavior patterns and factors influencing altitudinal migration in the Xiling Snow Mountains, which are part of the Hengduan mountain range in southwest China. We recorded the local bird diversity, the seasonal change of: the average temperature (AT), the average humidity (AH), the average invertebrate biomass (AIB), and the amount of plant food sources (PFS) at two study sites (∼1300 and ∼2100 m a.s.l.) during two migration seasons from September 2022 to May 2023. During our surveys, we recorded 96 bird species in total. Among these, 15 altitudinal migrants were identified. The most common family among altitudinal migrants was Leiothrichidae. AT, AIB, and PFS had a significant positive correlation with the monthly number of individuals (MNI) several bird species, implying that increasing temperatures and an increasing abundance of invertebrates and PFS possibly induced upward migration of altitudinal migrants and vice versa. AH possibly only played a minor role in influencing altitudinal migration, since it exhibited no significant correlation with the MNI. Furthermore, we found that the upward migration temperature range of altitudinal migrants ranged between 9.8°C and 13.9°C during spring and the downward migration temperature range ranged between 12.2°C and 7.9°C during autumn. In conclusion, our study and several other studies revealed that the same environmental factors influenced the altitudinal migration patterns of birds in the Hengduan Mountains.

Anthropogenic double jeopardy: urban noise and artificial light at night interact synergistically to influence abundance.

Artificial light at night (ALAN) and urban noise are increasing globally and can have a range of impacts on wildlife. While ALAN and noise often co-occur and can affect wildlife in similar ways, their impacts have generally been studied in isolation. Information about possible interactive impacts, which can be more serious, is critical to guide conservation. We studied how noise and ALAN impact a common urban waterbird (Eurasian coot Fulica atra) around the city of Melbourne, in south-eastern Australia. We aimed to examine: (1) the individual and (2) interactive impacts of noise and ALAN on abundance, and (3) the relative influence of these stressors and other environmental predictors. To do so, we used data from a large-scale (1,463 surveys across an area of 9,250km2 with significant heterogeneity in light and ALAN conditions), long-term (2008-2018) monitoring program, overlaid with georeferenced noise and light data. We used generalised linear mixed effects models and boosted regression trees to model individual and interactive effects of ALAN and noise on abundance. Abundance was negatively correlated with noise and ALAN individually. However, the two stressors had a negative synergistic effect, ultimately resulting in the absence of coots at the highest observed ALAN and noise levels. We also estimate that the combined influence of the two stressors on abundance was larger than that of other examined environmental factors. Our findings that noise and ALAN have detrimental interactive impacts is worrying for two reasons. Firstly, Eurasian coots are thought to be tolerant to urbanisation, so impacts may be more severe for less tolerant species. Secondly, noise and ALAN commonly co-occur around cities, so similar impacts are likely elsewhere. By adopting more biologically and ecologically realistic analytical frameworks, future studies can better estimate the cumulative impacts of multiple stressors to facilitate improved conservation and management.

Contemporary intergeneric hybridization and backcrossing among birds-of-paradise.

Despite large differences in morphology, behavior and lek-mating strategies the birds-of-paradise are known to hybridize occasionally, even across different genera. Many of these bird-of-paradise hybrids were originally described as distinct species based on large morphological differences when compared to recognized species. Nowadays, these specimens are generally recognized as hybrids based on morphological assessments. Having fascinated naturalists for centuries, hybrid specimens of birds-of-paradise have been collected and the specimens kept in Natural History Collections. In the present study, we utilize this remarkable resource in a museomics framework and evaluate the genomic composition of most described intergeneric hybrids and some intrageneric hybrids. We show that the majority of investigated specimens are first-generation hybrids and that the parental species, in most cases, are in line with prior morphological assessments. We also identify two specimens that are the result of introgressive hybridization between different genera. Additionally, two specimens exhibit hybrid morphologies but have no identifiable signals of hybridization, which may indicate that minor levels of introgression can have large morphological effects. Our findings provide direct evidence of contemporary introgressive hybridization taking place between genera of birds-of-paradise in nature, despite markedly different morphologies and lek-mating behaviors.