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1.
Sensors (Basel) ; 24(13)2024 Jun 24.
Artigo em Inglês | MEDLINE | ID: mdl-39000886

RESUMO

Wireless sensor networks (WSNs) are attracting increasing research interest due to their ability to monitor large areas independently. Their reliability is a crucial issue, as it is influenced by hardware, data, and energy-related factors such as loading conditions, signal attenuation, and battery lifetime. Proper selection of sensor node positions is essential to maximise system reliability during the development of products equipped with WSNs. For this purpose, this paper presents an approach to estimate WSN system reliability during the development phase based on the analysis of measurements, using strain measurements in finite element (FE) models as an example. The approach involves dividing the part under consideration into regions with similar strains using a region growing algorithm (RGA). The WSN configuration is then analysed for reliability based on data paths and measurement redundancy resulting from the sensor positions in the identified measuring regions. This methodology was tested on an exemplary WSN configuration at an aircraft wing box under bending load and found to effectively estimate the hardware perspective on system reliability. Therefore, the methodology and algorithm show potential for optimising sensor node positions to achieve better reliability results.

2.
Bioengineering (Basel) ; 11(5)2024 May 08.
Artigo em Inglês | MEDLINE | ID: mdl-38790333

RESUMO

BACKGROUND: The morphology and internal composition, particularly the nucleus-to-cross sectional area (NP-to-CSA) ratio of the lumbar intervertebral discs (IVDs), is important information for finite element models (FEMs) of spinal loadings and biomechanical behaviors, and, yet, this has not been well investigated and reported. METHODS: Anonymized MRI scans were retrieved from a previously established database, including a total of 400 lumbar IVDs from 123 subjects (58 F and 65 M). Measurements were conducted manually by a spine surgeon and using two computer-assisted segmentation algorithms, i.e., fuzzy C-means (FCM) and region growing (RG). The respective results were compared. The influence of gender and spinal level was also investigated. RESULTS: Ratios derived from manual measurements and the two computer-assisted algorithms (FCM and RG) were 46%, 39%, and 38%, respectively. Ratios derived manually were significantly larger. CONCLUSIONS: Computer-assisted methods provide reliable outcomes that are traditionally difficult for the manual measurement of internal composition. FEMs should consider the variability of NP-to-CSA ratios when studying the biomechanical behavior of the spine.

3.
Sci Rep ; 14(1): 9784, 2024 04 29.
Artigo em Inglês | MEDLINE | ID: mdl-38684904

RESUMO

Accurate multi-organ segmentation in 3D CT images is imperative for enhancing computer-aided diagnosis and radiotherapy planning. However, current deep learning-based methods for 3D multi-organ segmentation face challenges such as the need for labor-intensive manual pixel-level annotations and high hardware resource demands, especially regarding GPU resources. To address these issues, we propose a 3D proxy-bridged region-growing framework specifically designed for the segmentation of the liver and spleen. Specifically, a key slice is selected from each 3D volume according to the corresponding intensity histogram. Subsequently, a deep learning model is employed to pinpoint the semantic central patch on this key slice, to calculate the growing seed. To counteract the impact of noise, segmentation of the liver and spleen is conducted on superpixel images created through proxy-bridging strategy. The segmentation process is then extended to adjacent slices by applying the same methodology iteratively, culminating in the comprehensive segmentation results. Experimental results demonstrate that the proposed framework accomplishes segmentation of the liver and spleen with an average Dice Similarity Coefficient of approximately 0.93 and a Jaccard Similarity Coefficient of around 0.88. These outcomes substantiate the framework's capability to achieve performance on par with that of deep learning methods, albeit requiring less guidance information and lower GPU resources.


Assuntos
Aprendizado Profundo , Imageamento Tridimensional , Fígado , Baço , Tomografia Computadorizada por Raios X , Fígado/diagnóstico por imagem , Baço/diagnóstico por imagem , Baço/anatomia & histologia , Humanos , Imageamento Tridimensional/métodos , Tomografia Computadorizada por Raios X/métodos , Processamento de Imagem Assistida por Computador/métodos , Algoritmos
4.
Sci Rep ; 14(1): 9749, 2024 04 28.
Artigo em Inglês | MEDLINE | ID: mdl-38679633

RESUMO

Recently, skin cancer is one of the spread and dangerous cancers around the world. Early detection of skin cancer can reduce mortality. Traditional methods for skin cancer detection are painful, time-consuming, expensive, and may cause the disease to spread out. Dermoscopy is used for noninvasive diagnosis of skin cancer. Artificial Intelligence (AI) plays a vital role in diseases' diagnosis especially in biomedical engineering field. The automated detection systems based on AI reduce the complications in the traditional methods and can improve skin cancer's diagnosis rate. In this paper, automated early detection system for skin cancer dermoscopic images using artificial intelligent is presented. Adaptive snake (AS) and region growing (RG) algorithms are used for automated segmentation and compared with each other. The results show that AS is accurate and efficient (accuracy = 96%) more than RG algorithm (accuracy = 90%). Artificial Neural networks (ANN) and support vector machine (SVM) algorithms are used for automated classification compared with each other. The proposed system with ANN algorithm shows high accuracy (94%), precision (96%), specificity (95.83%), sensitivity (recall) (92.30%), and F1-score (0.94). The proposed system is easy to use, time consuming, enables patients to make early detection for skin cancer and has high efficiency.


Assuntos
Algoritmos , Inteligência Artificial , Dermoscopia , Detecção Precoce de Câncer , Redes Neurais de Computação , Neoplasias Cutâneas , Máquina de Vetores de Suporte , Humanos , Neoplasias Cutâneas/diagnóstico , Detecção Precoce de Câncer/métodos , Dermoscopia/métodos , Sensibilidade e Especificidade
5.
J Biomol Struct Dyn ; : 1-19, 2024 Feb 19.
Artigo em Inglês | MEDLINE | ID: mdl-38373067

RESUMO

Diabetic retinopathy (DR) is a global visual indicator of diabetes that leads to blindness and loss of vision. Manual testing presents a more difficult task when attempting to detect DR due to the complexity and variances of DR. Early detection and treatment prevent the diabetic patients from visual loss. Also classifying the intensity and levels of DR is crucial to provide necessary treatment. This study develops a novel deep learning (DL) approach called He Weighted Bi-directional Long Short-term Memory (HWBLSTM) with an effective transfer learning technique for detecting DR from the RFI. The collected fundus images initially undergo preprocessing to improve their quality, which includes noise removal and contrast enhancement using a Hybrid Gaussian Filter and probability density Function-based Gamma Correction (HGFPDFGC) technique. The segmentation procedure divides the image into subgroups and is crucial for accurate detection and classification. The segmentation of the study initially removes the optical disk (OD) and blood vessels (BVs) from the preprocessed images using mathematical morphological operations. Next, it segments the retinal lesions from the OD and BV removed images using the Enhanced Grasshopper Optimization-based Region Growing Algorithm (EGORGA). Then, the features from the segmented retinal lesions are learned using a Squeeze Net (SQN), and the dimensionality reduction of the extracted features is done using the Modified Singular Value Decomposition (MSVD) approach. Finally, the classification is performed by employing the HWBLSTM approach, which classifies the DR abnormalities in datasets as non-DR (NDR), non-proliferative DR (NPDR), moderate NPDR (MDNPDR), and severe DR, also known as proliferative DR (PDR). The proposed approach is implemented on APTOS as well as MESSIDOR datasets. The outcomes proved that the proposed technique accurately identifies the DR with minimal computation overhead compared to the existing approaches.Communicated by Ramaswamy H. Sarma.

6.
J Imaging ; 10(1)2024 Jan 19.
Artigo em Inglês | MEDLINE | ID: mdl-38276319

RESUMO

The aim of this article is to review the single photon emission computed tomography (SPECT) segmentation methods used in patient-specific dosimetry of 177Lu molecular therapy. Notably, 177Lu-labelled radiopharmaceuticals are currently used in molecular therapy of metastatic neuroendocrine tumours (ligands for somatostatin receptors) and metastatic prostate adenocarcinomas (PSMA ligands). The proper segmentation of the organs at risk and tumours in targeted radionuclide therapy is an important part of the optimisation process of internal patient dosimetry in this kind of therapy. Because this is the first step in dosimetry assessments, on which further dose calculations are based, it is important to know the level of uncertainty that is associated with this part of the analysis. However, the robust quantification of SPECT images, which would ensure accurate dosimetry assessments, is very hard to achieve due to the intrinsic features of this device. In this article, papers on this topic were collected and reviewed to weigh up the advantages and disadvantages of the segmentation methods used in clinical practice. Degrading factors of SPECT images were also studied to assess their impact on the quantification of 177Lu therapy images. Our review of the recent literature gives an insight into this important topic. However, based on the PubMed and IEEE databases, only a few papers investigating segmentation methods in 177Lumolecular therapy were found. Although segmentation is an important step in internal dose calculations, this subject has been relatively lightly investigated for SPECT systems. This is mostly due to the inner features of SPECT. What is more, even when studies are conducted, they usually utilise the diagnostic radionuclide 99mTc and not a therapeutic one like 177Lu, which could be of concern regarding SPECT camera performance and its overall outcome on dosimetry.

7.
Sensors (Basel) ; 23(10)2023 May 12.
Artigo em Inglês | MEDLINE | ID: mdl-37430627

RESUMO

Mountainous regions are prone to dammed lake disasters due to their rough topography, scant vegetation, and high summer rainfall. By measuring water level variation, monitoring systems can detect dammed lake events when mudslides block rivers or boost water level. Therefore, an automatic monitoring alarm method based on a hybrid segmentation algorithm is proposed. The algorithm uses the k-means clustering algorithm to segment the picture scene in the RGB color space and the region growing algorithm on the image green channel to select the river target from the segmented scene. The pixel water level variation is used to trigger an alarm for the dammed lake event after the water level has been retrieved. In the Yarlung Tsangpo River basin of the Tibet Autonomous Region of China, the proposed automatic lake monitoring system was installed. We pick up data from April to November 2021, during which the river experienced low, high, and low water levels. Unlike conventional region growing algorithms, the algorithm does not rely on engineering knowledge to pick seed point parameters. Using our method, the accuracy rate is 89.29% and the miss rate is 11.76%, which is 29.12% higher and 17.65% lower than the traditional region growing algorithm, respectively. The monitoring results indicate that the proposed method is a highly adaptable and accurate unmanned dammed lake monitoring system.

8.
Int J Comput Assist Radiol Surg ; 18(11): 2063-2072, 2023 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-37270742

RESUMO

PURPOSE: The acquisition conditions of medical imaging are often precisely defined, leading to a high homogeneity among different data sets. Nonetheless, outliers or artefacts still appear and need to be reliably detected to ensure a reliable diagnosis. Thus, the algorithms need to handle small sample sizes especially, when working with domain specific imaging modalities. METHODS: In this work, we suggest a pipeline for the detection and segmentation of light pollution in near-infrared fluorescence optical imaging (NIR-FOI), based on a small sample size. NIR-FOI produces spatio-temporal data with two spatial and one temporal dimension. To calculate a two-dimensional light pollution map for the entire image stack, we combine region growing and k-nearest neighbours (kNN), which classifies pixels into fore- and background by its entire temporal component. Thus, decision-making on reduced data is omitted. RESULTS: We achieved a [Formula: see text] score of 0.99 for classifying a data set as light polluted or pollution-free. Additionally, we reached a total [Formula: see text] score of 0.90 for detecting regions of interest within the polluted data sets. Finally, an average Dice's coefficient measuring the segmentation performance over all polluted data sets of 0.80 was accomplished. CONCLUSIONS: A Dice's coefficient of 0.80 for the area segmentation does not seem perfect. However, there are two main factors, besides true prediction errors, lowering the score: Segmentation mistakes on small areas lead to a rapid decrease in the score and labelling errors due to complex data. However, in combination with the light-polluted data set and pollution area detection, these results can be considered successful and play a key role in our general goal: Exploiting NIR-FOI for the early detection of arthritis within hand joints.

9.
Phys Eng Sci Med ; 46(1): 151-164, 2023 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-36787022

RESUMO

Arterial stiffness (AS) refers to the loss of arterial compliance and alterations in vessel wall properties. The study of local carotid stiffness (CS) is particularly important since carotid artery stiffening raises the risk of stroke, cognitive impairment, and dementia. So, stiffness measurement as a screening tool approach is crucial because it can reduce mortality and facilitate therapy planning. This study aims to evaluate the stiffness of the CCA using machine learning (ML) through the features of diameter change (ΔD) and stiffness parameters. This study was conducted in seven stages: data collection, preprocessing, CCA segmentation, CCA lumen diameter (DCCA) computing during cardiac cycles, denoising signals of DCCA, computational of AS parameters, and stiffness assessment using ML. The 51 videos (with 25 s) of CCA B-mode ultrasound (US) were used and analyzed. Each US video yielded approximately 750 sequential frames spanning about 24 cardiac cycles. Firstly, US preset settings with time gain compensation with a U-pattern were employed to enhance CCA segmentations. The study showed that auto region-growing, employed three times, is appropriate for segmenting walls with a short running time (4.56 s/frame). The diameter computed for frames constructs a signal (diameter signal) with noisy parts in the shape of peak variance and an un-smooth side. Among the 12 employed smoothing methods, spline fitting with a mean peak difference per cycle (MPDCY) of 0.58 pixels was the most effective for the diameter signal. The authors propose the MPDCY as a new selection criterion for smoothing methods with highly preserved peaks. The ΔD (Dsys-Ddia) determined in this study was validated by statistical analysis as a viable replacement for manual ΔD measurement. Statistical analysis was carried out by Mann-Whitney t-test with a p-value of 0.81, regression line R2 = 0.907, and there was no difference in means between the two groups for box plots. The stiffness parameters of the carotid arteries were calculated based on auto-ΔD and pulse pressure. Five ML models, including K-nearest neighbor (KNN), support vector machine (SVM), decision tree (DT), logistic regression (LR), and random forest (RF), fed by distension (ΔD) and five stiffness parameters, were used to distinguish between the stiffened and un-stiffened CCA. Except for SVM, all models performed excellently in terms of specificity, sensitivity, precision, and area under the curve (AUC). In addition, the scatterplot and statistical analysis of the fed features confirm these remarkable outcomes. The scatter plot demonstrates that a linear hyperline can easily distinguish between the two classes. The statistical analysis shows that the stiffness parameters computed from the database of this work were statistically (p < 0.05) distributed into the non-stiffness and stiffness groups. The presented models are validated by applying them to additional datasets. Applying models to other datasets reveals a model performance of 100%. The proposed ML models could be applied in clinical practice to detect CS early, which is essential for preventing stroke.


Assuntos
Acidente Vascular Cerebral , Rigidez Vascular , Humanos , Artérias Carótidas/diagnóstico por imagem , Artéria Carótida Primitiva , Aprendizado de Máquina
10.
J Exp Orthop ; 10(1): 1, 2023 Jan 06.
Artigo em Inglês | MEDLINE | ID: mdl-36607513

RESUMO

PURPOSE: This study aimed to assess the accuracy and reproducibility of four common segmentation techniques measuring subchondral bone cyst volume in clinical-CT scans of glenohumeral OA patients. METHODS: Ten humeral head osteotomies collected from cystic OA patients, having undergone total shoulder arthroplasty, were scanned within a micro-CT scanner, and corresponding preoperative clinical-CT scans were gathered. Cyst volumes were measured manually in micro-CT and served as a reference standard (n = 13). Respective cyst volumes were measured on the clinical-CT scans by two independent graders using four segmentation techniques: Qualitative, Edge Detection, Region Growing, and Thresholding. Cyst volume measured in micro-CT was compared to the different clinical-CT techniques using linear regression and Bland-Altman analysis. Reproducibility of each technique was assessed using intraclass correlation coefficient (ICC). RESULTS: Each technique outputted lower volumes on average than the reference standard (-0.24 to -3.99 mm3). All linear regression slopes and intercepts were not significantly different than 1 and 0, respectively (p < 0.05). Cyst volumes measured using Qualitative and Edge Detection techniques had the highest overall agreement with reference micro-CT volumes (mean discrepancy: 0.24, 0.92 mm3). These techniques showed good to excellent reproducibility between graders. CONCLUSIONS: Qualitative and Edge Detection techniques were found to accurately and reproducibly measure subchondral cyst volume in clinical-CT. These findings provide evidence that clinical-CT may accurately gauge glenohumeral cystic presence, which may be useful for disease monitoring and preoperative planning. LEVEL OF EVIDENCE: Retrospective cohort Level 3 study.

11.
Diagnostics (Basel) ; 12(12)2022 Nov 28.
Artigo em Inglês | MEDLINE | ID: mdl-36552978

RESUMO

In medical image processing, accurate segmentation of lung tumors is very important. Computer-aided accurate segmentation can effectively assist doctors in surgery planning and treatment decisions. Although the accurate segmentation results of lung tumors can provide a reliable basis for clinical treatment, the key to obtaining accurate segmentation results is how to improve the segmentation performance of the algorithm. We propose an automatic segmentation method for lung tumors based on an improved region growing algorithm, which uses the prior information on lung tumors to achieve an automatic selection of the initial seed point. The proposed method includes a seed point expansion mechanism and an automatic threshold update mechanism and takes the combination of multiple segmentation results as the final segmentation result. In the lung image database consortium (LIDC-IDRI) dataset, we designed 10 experiments to test the proposed method and compare it with 4 popular segmentation methods. The experimental results show that the average dice coefficient obtained by the proposed method is 0.936 ± 0.027, and the average Jaccard distance is 0.114 ± 0.049. The average dice coefficient obtained by the proposed method is 0.107, 0.053, 0.040, and 0.156, higher than that of the other four methods, respectively. This study proves that the proposed method can automatically segment lung tumors in CT slices and has suitable segmentation performance.

12.
Sheng Wu Yi Xue Gong Cheng Xue Za Zhi ; 39(5): 945-957, 2022 Oct 25.
Artigo em Chinês | MEDLINE | ID: mdl-36310483

RESUMO

Confocal laser endomicroscopy technology can obtain cell-level images in real time and in situ, which can assist doctors in real-time intraoperative diagnosis, but its non-invasiveness makes it difficult to relocate the optical biopsy site. The confocal probe localization algorithm can automatically calculate the coordinates of the probe tip, that is, the coordinates of the optical biopsy site. In this paper, a confocal probe localization algorithm based on region growing and endoscope size prior was proposed. The algorithm detected the probe region by region growing on the probe edge image, then searched for tip points based on a given probe axis, and iteratively optimized it. Finally, based on the single-degree-of-freedom motion characteristics of the probe, the three-dimensional coordinates of the tip of the probe were calculated by using the prior information of the size of the endoscope, which solved the scale uncertainty problem of the monocular camera. The confocal probe localization algorithm was tested on the dataset collected in this paper. The results showed that our algorithm no longer relied on the color information of the probe, avoided the influence of uneven illumination on the gray value of the probe pixels, and had a more robust location accuracy and running speed. Within the length of the probe extending out of the endoscope from 0 to 5 cm, the pixel error could be as low as 11.76 pixels, and the average relative position error could be as low as 1.66 mm, which can achieve the real-time and accurate localization of the confocal probe.


Assuntos
Algoritmos , Endoscópios , Microscopia Confocal/métodos
13.
Comput Biol Med ; 150: 106078, 2022 11.
Artigo em Inglês | MEDLINE | ID: mdl-36155266

RESUMO

Resting-state Magnetic resonance imaging-based parcellation aims to group the voxels/vertices non-invasively based on their connectivity profiles, which has achieved great success in understanding the fundamental organizational principles of the human brain. Given the substantial inter-individual variability, the increasing number of studies focus on individual parcellation. However, current methods perform individual parcellations independently or are based on the group prior, requiring expensive computational costs, precise parcel alignment, and extra group information. In this work, an efficient and flexible parcellation framework of individual cerebral cortex was proposed based on a region growing algorithm by merging the unassigned and neighbor vertex with the highest-correlated parcel iteratively. It considered both consistency with prior atlases and individualized functional homogeneity of parcels, which can be applied to a single individual without parcel alignment and group information. The proposed framework was leveraged to 100 unrelated subjects for functional homogeneity comparison and individual identification, and 186 patients with Parkison's disease for symptom prediction. Results demonstrated our framework outperformed other methods in functional homogeneity, and the generated parcellations provided 100% individual identification accuracy. Moreover, the default mode network (DMN) exhibited higher functional homogeneity, intra-subject parcel reproducibility and fingerprinting accuracy, while the sensorimotor network did the opposite, reflecting that the DMN is the most representative, stable, and individual-identifiable network in the resting state. The correlation analysis showed that the severity of the disease symptoms was related negatively to the similarity of individual parcellation and the atlases of healthy populations. The disease severity can be correctly predicted using machine learning models based on individual topographic features such as parcel similarity and parcel size. In summary, the proposed framework not only significantly improves the functional homogeneity but also captures individualized and disease-related brain topography, serving as a potential tool to explore brain function and disease in the future.


Assuntos
Encéfalo , Imageamento por Ressonância Magnética , Humanos , Reprodutibilidade dos Testes , Encéfalo/diagnóstico por imagem , Imageamento por Ressonância Magnética/métodos , Mapeamento Encefálico/métodos , Córtex Cerebral/diagnóstico por imagem
14.
Sensors (Basel) ; 22(11)2022 Jun 02.
Artigo em Inglês | MEDLINE | ID: mdl-35684878

RESUMO

With the development of superframe high-dynamic-range infrared imaging technology that extends the dynamic range of thermal imaging systems, a key issue that has arisen is how to choose different integration times to obtain an HDR fusion image that contains more information. This paper proposes a multi-integration time adaptive method, in order to address the lack of objective evaluation methods for the selection of superframe infrared images, consisting of the following steps: image evaluation indicators are used to obtain the best global exposure image (the optimal integration time); images are segmented by region-growing point to obtain the ambient/high-temperature regions, selecting the local optimum images with grayscale closest to the medium grayscale of the IR imaging system for the two respective regions (lowest and highest integration time); finally, the three images above are fused and enhanced to achieve HDR infrared imaging. By comparing this method with some existing integration time selection methods and applying the proposed method to some typical fusion methods, via subjective and objective evaluation, the proposed method is shown to have obvious advantages over existing algorithms, and it can optimally select the images from different integration time series images to form the best combination that contains full image information, expanding the dynamic range of the IR imaging system.


Assuntos
Algoritmos , Interpretação de Imagem Assistida por Computador , Interpretação de Imagem Assistida por Computador/métodos
15.
Sensors (Basel) ; 22(12)2022 Jun 15.
Artigo em Inglês | MEDLINE | ID: mdl-35746310

RESUMO

This paper proposes a development of automatic rib sequence labeling systems on chest computed tomography (CT) images with two suggested methods and three-dimensional (3D) region growing. In clinical practice, radiologists usually define anatomical terms of location depending on the rib's number. Thus, with the manual process of labeling 12 pairs of ribs and counting their sequence, it is necessary to refer to the annotations every time the radiologists read chest CT. However, the process is tedious, repetitive, and time-consuming as the demand for chest CT-based medical readings has increased. To handle the task efficiently, we proposed an automatic rib sequence labeling system and implemented comparison analysis on two methods. With 50 collected chest CT images, we implemented intensity-based image processing (IIP) and a convolutional neural network (CNN) for rib segmentation on this system. Additionally, three-dimensional (3D) region growing was used to classify each rib's label and put in a sequence label. The IIP-based method reported a 92.0% and the CNN-based method reported a 98.0% success rate, which is the rate of labeling appropriate rib sequences over whole pairs (1st to 12th) for all slices. We hope for the applicability thereof in clinical diagnostic environments by this method-efficient automatic rib sequence labeling system.


Assuntos
Costelas , Tomografia Computadorizada por Raios X , Processamento de Imagem Assistida por Computador , Redes Neurais de Computação , Costelas/diagnóstico por imagem , Tórax , Tomografia Computadorizada por Raios X/métodos
16.
Diagnostics (Basel) ; 12(4)2022 Apr 18.
Artigo em Inglês | MEDLINE | ID: mdl-35454065

RESUMO

Delineation of resected brain cavities on magnetic resonance images (MRIs) of epilepsy surgery patients is essential for neuroimaging/neurophysiology studies investigating biomarkers of the epileptogenic zone. The gold standard to delineate the resection on MRI remains manual slice-by-slice tracing by experts. Here, we proposed and validated a semiautomated MRI segmentation pipeline, generating an accurate model of the resection and its anatomical labeling, and developed a graphical user interface (GUI) for user-friendly usage. We retrieved pre- and postoperative MRIs from 35 patients who had focal epilepsy surgery, implemented a region-growing algorithm to delineate the resection on postoperative MRIs and tested its performance while varying different tuning parameters. Similarity between our output and hand-drawn gold standards was evaluated via dice similarity coefficient (DSC; range: 0-1). Additionally, the best segmentation pipeline was trained to provide an automated anatomical report of the resection (based on presurgical brain atlas). We found that the best-performing set of parameters presented DSC of 0.83 (0.72-0.85), high robustness to seed-selection variability and anatomical accuracy of 90% to the clinical postoperative MRI report. We presented a novel user-friendly open-source GUI that implements a semiautomated segmentation pipeline specifically optimized to generate resection models and their anatomical reports from epilepsy surgery patients, while minimizing user interaction.

17.
Sensors (Basel) ; 22(7)2022 Mar 25.
Artigo em Inglês | MEDLINE | ID: mdl-35408125

RESUMO

Most studies on map segmentation and recognition are focused on architectural floor plans, while there are very few analyses of shopping mall plans. The objective of the work is to accurately segment and recognize the shopping mall plan, obtaining location and semantic information for each room via segmentation and recognition. This work can be used in other applications such as indoor robot navigation, building area and location analysis, and three-dimensional reconstruction. First, we identify and match the catalog of a mall floor plan to obtain matching text, and then we use the two-stage region growth method we proposed to segment the preprocessed floor plan. The room number is then obtained by sending each segmented room section to an OCR (optical character recognition) system for identification. Finally, the system retrieves the matching text to match the room number in order to obtain the room name, and outputs the needed room location and semantic information. It is considered a successful detection when a room region can be successfully segmented and identified. The proposed method is evaluated on a dataset including 1340 rooms. Experimental results show that the accuracy of room segmentation is 92.54%, and the accuracy of room recognition is 90.56%. The total detection accuracy is 83.81%.

18.
Microsc Microanal ; : 1-14, 2022 Apr 07.
Artigo em Inglês | MEDLINE | ID: mdl-35387704

RESUMO

In vivo transparent vessel segmentation is important to life science research. However, this task remains very challenging because of the fuzzy edges and the barely noticeable tubular characteristics of vessels under a light microscope. In this paper, we present a new machine learning method based on blood flow characteristics to segment the global vascular structure in vivo. Specifically, the videos of blood flow in transparent vessels are used as input. We use the machine learning classifier to classify the vessel pixels through the motion features extracted from moving red blood cells and achieve vessel segmentation based on a region-growing algorithm. Moreover, we utilize the moving characteristics of blood flow to distinguish between the types of vessels, including arteries, veins, and capillaries. In the experiments, we evaluate the performance of our method on videos of zebrafish embryos. The experimental results indicate the high accuracy of vessel segmentation, with an average accuracy of 97.98%, which is much more superior than other segmentation or motion-detection algorithms. Our method has good robustness when applied to input videos with various time resolutions, with a minimum of 3.125 fps.

19.
Front Neurol ; 13: 865023, 2022.
Artigo em Inglês | MEDLINE | ID: mdl-35422751

RESUMO

Intracerebral hemorrhage (ICH) poses a great threat to human life due to its high incidence and poor prognosis. Identification of the bleeding location and quantification of the volume based on CT images are of great significance for assisting the diagnosis and treatment of ICH. In this study, a region-growing algorithm based on watershed preprocessing (RG-WP) was proposed to segment and quantify the hemorrhage. The lowest points yielded by the watershed algorithm were used as seed points for region growing and then hemorrhage was segmented based on the region growing method. At the same time, to integrate the rich experience of clinicians with the algorithm, manual selection of seed points on the basis of watershed segmentation was performed. With the application of segmentation on CT images of 55 patients with ICH, the performance of the RG-WP algorithm was evaluated by comparing it with manual segmentations delineated by professional clinicians as well as the traditional ABC/2 method and the deep learning algorithm U-net. The mean deviation of hemorrhage volume of the RG-WP algorithm from manual segmentation was -0.12 ml (range: -1.05-1.16), while that of the ABC/2 from the manual was 1.05 ml (range: -0.77-9.57). Strong agreement of the algorithm and the manual was confirmed with a high intraclass correlation coefficient (ICC) (0.998, 95% CI: 0.997-0.999), which was superior to that of the ABC/2 and the manual (0.972, 95% CI: 0.953-0.984). The sensitivity (Sen), positive predictive value (PPV), dice similarity index (DSI), and Jaccard index (JI) of the RG-WP algorithm compared to the manual were 0.92 ± 0.04, 0.95 ± 0.04, 0.93 ± 0.02, and 0.88 ± 0.04, respectively, showing high consistency. Besides, the accuracy of the algorithm was also comparable to that of the deep learning method U-net, with Sen, PPV, DSI, and JI being 0.91 ± 0.09, 0.91 ± 0.06, 0.91 ± 0.05, and 0.91 ± 0.06, respectively.

20.
Sensors (Basel) ; 21(21)2021 Oct 20.
Artigo em Inglês | MEDLINE | ID: mdl-34770267

RESUMO

For high-resolution side scan sonar images, accurate and fast segmentation of sonar images is crucial for underwater target detection and recognition. However, due to the characteristics of low signal-to-noise ratio (SNR) and complex environmental noise of sonar, the existing methods with high accuracy and good robustness are mostly iterative methods with high complexity and poor real-time performance. For this purpose, a region growing based segmentation using the likelihood ratio testing method (RGLT) is proposed. This method obtains the seed points in the highlight and the shadow regions by likelihood ratio testing based on the statistical probability distribution and then grows them according to the similarity criterion. The growth avoids the processing of the seabed reverberation regions, which account for the largest proportion of sonar images, thus greatly reducing segmentation time and improving segmentation accuracy. In addition, a pre-processing filtering method called standard deviation filtering (STDF) is proposed to improve the SNR and remove the speckle noise. Experiments were conducted on three sonar databases, which showed that RGLT has significantly improved quantitative metrics such as accuracy, speed, and segmentation visual effects. The average accuracy and running times of the proposed segmentation method for 100 × 400 images are separately 95.90% and 0.44 s.


Assuntos
Algoritmos , Processamento de Imagem Assistida por Computador , Funções Verossimilhança , Razão Sinal-Ruído , Som
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